Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47447 * 2 1 4 4 C 1.46499 * 119.99954 * 274.00402 * 3 2 1 5 5 C 1.50701 * 109.46959 * 280.85572 * 4 3 2 6 6 H 1.07991 * 120.00175 * 3.43099 * 5 4 3 7 7 C 1.37879 * 119.99623 * 183.43303 * 5 4 3 8 8 N 1.31526 * 119.99538 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00549 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46992 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47334 * 210.00280 * 9 7 5 12 12 H 1.48502 * 109.46998 * 330.00093 * 9 7 5 13 13 S 1.65600 * 120.00114 * 93.99975 * 3 2 1 14 14 O 1.42093 * 106.40432 * 336.22530 * 13 3 2 15 15 O 1.42105 * 106.40184 * 203.30452 * 13 3 2 16 16 N 1.65603 * 107.21370 * 89.76680 * 13 3 2 17 17 C 1.46498 * 120.00263 * 65.43372 * 16 13 3 18 18 C 1.53001 * 109.47354 * 164.76199 * 17 16 13 19 19 H 1.09005 * 109.46870 * 304.99573 * 18 17 16 20 20 C 1.52998 * 109.46919 * 64.99625 * 18 17 16 21 21 C 1.53006 * 109.46755 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.46962 * 299.99703 * 21 20 18 23 23 C 1.52998 * 109.47143 * 60.00535 * 22 21 20 24 24 H 1.08993 * 109.47313 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47210 * 59.99308 * 23 22 21 26 26 C 1.52994 * 109.47352 * 184.99826 * 18 17 16 27 27 H 1.09001 * 109.46937 * 65.05325 * 1 2 3 28 28 H 1.09002 * 109.47411 * 185.05405 * 1 2 3 29 29 H 1.08999 * 109.46719 * 305.05511 * 1 2 3 30 30 H 1.09005 * 109.47007 * 239.99665 * 2 1 3 31 31 H 1.08999 * 109.46640 * 119.99809 * 2 1 3 32 32 H 1.09002 * 109.47345 * 40.85397 * 4 3 2 33 33 H 1.09001 * 109.47523 * 160.85093 * 4 3 2 34 34 H 0.97000 * 119.99746 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99356 * 245.42188 * 16 13 3 36 36 H 1.08996 * 109.47320 * 44.75631 * 17 16 13 37 37 H 1.09002 * 109.46967 * 284.75714 * 17 16 13 38 38 H 1.09002 * 109.47150 * 300.00142 * 20 18 17 39 39 H 1.08995 * 109.47437 * 60.00356 * 20 18 17 40 40 H 1.08994 * 109.47381 * 60.00320 * 21 20 18 41 41 H 1.09007 * 109.46512 * 180.02562 * 21 20 18 42 42 H 1.09008 * 109.46919 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.47335 * 300.00006 * 22 21 20 44 44 H 1.08993 * 109.47502 * 300.00521 * 25 23 22 45 45 H 1.09008 * 109.47054 * 60.00415 * 25 23 22 46 46 H 1.09007 * 109.47335 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.47168 * 300.00205 * 26 18 17 48 48 H 1.09004 * 109.47077 * 59.99539 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1791 2.1012 -1.2656 5 6 3.4605 1.6687 -1.9305 6 1 4.0641 0.8915 -1.4856 7 6 3.8622 2.2653 -3.1068 8 7 4.9808 1.8881 -3.6868 9 14 2.8179 3.6091 -3.8768 10 1 3.2451 4.9305 -3.3509 11 1 2.9885 3.5847 -5.3518 12 1 1.3898 3.3805 -3.5399 13 16 2.3888 2.1284 1.4306 14 8 1.6426 1.4593 2.4378 15 8 2.2916 3.5257 1.1904 16 7 3.9845 1.8182 1.7469 17 6 5.0239 2.3551 0.8651 18 6 6.3829 2.2596 1.5615 19 1 6.3317 2.7606 2.5282 20 6 6.7477 0.7882 1.7683 21 6 8.1064 0.6928 2.4653 22 6 9.1726 1.3657 1.5984 23 6 8.8078 2.8371 1.3917 24 1 9.5675 3.3165 0.7745 25 6 8.7353 3.5401 2.7486 26 6 7.4487 2.9324 0.6943 27 1 -0.3633 0.4335 -0.9318 28 1 -0.3634 -1.0237 0.0905 29 1 -0.3633 0.5903 0.8413 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3367 1.8778 -1.9203 33 1 2.2142 3.1733 -1.0718 34 1 5.2633 2.3075 -4.5145 35 1 4.2308 1.2811 2.5161 36 1 4.8045 3.3983 0.6380 37 1 5.0485 1.7792 -0.0600 38 1 5.9883 0.3089 2.3861 39 1 6.7989 0.2872 0.8016 40 1 8.0549 1.1936 3.4320 41 1 8.3665 -0.3555 2.6121 42 1 10.1405 1.2981 2.0952 43 1 9.2242 0.8648 0.6318 44 1 7.9758 3.0607 3.3661 45 1 9.7033 3.4721 3.2452 46 1 8.4758 4.5885 2.6013 47 1 7.4999 2.4314 -0.2725 48 1 7.1887 3.9806 0.5469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336899931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -110.322438 kcal Electronic energy + Delta-G solvation = -27122.973037 eV Core-core repulsion = 23531.287417 eV Total energy + Delta-G solvation = -3591.685620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.22760 -36.70674 -36.16604 -35.25522 -35.01348 -32.65700 -31.54871 -30.67991 -30.21747 -27.14467 -26.67640 -24.92665 -22.92765 -22.21962 -21.54588 -20.88441 -18.84438 -18.36911 -17.28402 -16.86595 -16.81638 -15.84812 -15.45113 -15.04653 -14.44282 -14.23720 -14.08199 -13.96192 -13.65549 -13.35945 -13.24373 -12.82604 -12.54424 -12.49166 -12.31855 -12.03917 -11.96640 -11.95021 -11.53184 -11.51342 -11.41559 -11.27873 -11.17908 -11.11746 -10.97799 -10.87367 -10.79569 -10.51839 -10.36772 -10.16630 -10.08157 -9.80476 -9.78311 -9.62249 -8.82432 -8.66221 -8.11267 -6.18880 -4.18587 1.27987 3.25044 3.32248 3.36881 3.53078 4.14047 4.33548 4.76639 4.82250 4.85086 5.03669 5.13986 5.25188 5.33941 5.37853 5.45893 5.47160 5.52774 5.62922 5.71144 5.75727 5.77135 5.80229 5.86873 5.92866 6.02040 6.05285 6.11138 6.20490 6.24061 6.27956 6.36354 6.42137 6.42917 6.46667 6.54450 6.59414 6.62164 6.66675 6.87473 6.88784 7.12155 7.30695 7.50519 7.59989 8.38650 8.83388 9.42474 10.92553 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.005682 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.752735 B = 4926.471141 C = 6395.757261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.539 4.539 6 H 0.084 0.916 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.986 6.986 16 N -1.127 6.127 17 C 0.116 3.884 18 C -0.090 4.090 19 H 0.071 0.929 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.067 0.933 25 C -0.150 4.150 26 C -0.110 4.110 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -2.114 10.218 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.578 4.578 6 H 0.102 0.898 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.969 6.969 16 N -0.887 5.887 17 C -0.010 4.010 18 C -0.109 4.109 19 H 0.089 0.911 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.108 4.108 24 H 0.085 0.915 25 C -0.208 4.208 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.001 -1.430 10.409 11.243 hybrid contribution -0.031 0.251 -0.545 0.601 sum 3.971 -1.179 9.863 10.698 Atomic orbital electron populations 1.22215 0.97035 1.01490 1.02171 1.20981 0.93410 0.82558 1.02568 1.57501 1.79091 1.23132 1.23009 1.19578 0.98117 0.92302 0.81113 1.21406 1.05872 1.22519 1.07976 0.89815 1.24822 0.94704 0.96405 0.96563 1.69886 1.21782 1.42284 1.18860 0.87005 0.81797 0.83204 0.78771 1.19742 1.21117 1.18881 1.01627 0.72739 0.73593 0.72539 1.93546 1.69884 1.76559 1.58455 1.93556 1.86269 1.31434 1.85668 1.55898 1.25379 1.68630 1.38801 1.21606 0.85632 1.00077 0.93652 1.21340 0.94164 0.96161 0.99283 0.91095 1.21589 0.96073 0.96309 1.01224 1.21562 0.95332 0.99877 0.98901 1.21558 0.97848 0.95546 1.00207 1.21081 0.97541 0.95620 0.96601 0.91505 1.21949 1.01298 1.00252 0.97259 1.21562 0.93186 1.00921 0.99135 0.92352 0.92216 0.92650 0.89781 0.91727 0.94886 0.93884 0.92520 0.76228 0.90963 0.88213 0.92348 0.91200 0.92081 0.92497 0.92645 0.91794 0.92048 0.93350 0.92919 0.90698 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.21 6.01 -4.04 -0.02 2.19 16 3 N -0.99 -19.36 2.84 -115.66 -0.33 -19.69 16 4 C 0.21 4.80 4.54 -5.19 -0.02 4.78 16 5 C -0.54 -13.43 8.50 -34.44 -0.29 -13.72 16 6 H 0.08 2.20 6.96 -52.49 -0.37 1.83 16 7 C 0.08 2.07 5.47 -17.81 -0.10 1.97 16 8 N -0.89 -24.68 13.96 55.43 0.77 -23.90 16 9 Si 0.87 20.31 27.40 -169.99 -4.66 15.66 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -6.00 6.64 56.52 0.38 -5.63 16 13 S 2.79 53.60 6.10 -107.50 -0.66 52.95 16 14 O -1.00 -19.86 17.08 -57.17 -0.98 -20.84 16 15 O -0.99 -22.03 16.10 -57.17 -0.92 -22.95 16 16 N -1.13 -18.29 5.93 -10.61 -0.06 -18.35 16 17 C 0.12 1.98 5.55 -4.04 -0.02 1.96 16 18 C -0.09 -1.24 2.02 -90.62 -0.18 -1.42 16 19 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 20 C -0.11 -1.44 5.08 -26.73 -0.14 -1.58 16 21 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 22 C -0.11 -1.24 5.45 -26.73 -0.15 -1.39 16 23 C -0.09 -1.03 3.20 -90.60 -0.29 -1.32 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 C -0.15 -1.56 8.50 37.16 0.32 -1.25 16 26 C -0.11 -1.52 4.74 -26.71 -0.13 -1.64 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 31 H 0.06 0.98 7.65 -51.93 -0.40 0.59 16 32 H 0.03 0.74 7.44 -51.93 -0.39 0.36 16 33 H 0.04 1.02 6.07 -51.93 -0.32 0.71 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.40 5.49 7.40 -34.47 -0.26 5.24 16 36 H 0.07 1.35 7.74 -51.93 -0.40 0.95 16 37 H 0.10 1.97 5.56 -51.93 -0.29 1.68 16 38 H 0.06 0.69 6.89 -51.93 -0.36 0.33 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 45 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -29.42 372.60 -10.35 -39.76 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.33 Total: 6.82 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.80 Total: -15.08 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.38 Total: -61.95 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.90 Total: -43.79 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.66 Total: 15.66 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.66 Total: 52.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.42 -10.35 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.558 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds