Wall clock time and date at job start Tue Mar 31 2020 12:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47447 * 2 1 4 4 C 1.46499 * 119.99954 * 274.00402 * 3 2 1 5 5 C 1.50701 * 109.46959 * 280.85572 * 4 3 2 6 6 H 1.07991 * 120.00175 * 3.43099 * 5 4 3 7 7 C 1.37879 * 119.99623 * 183.43303 * 5 4 3 8 8 N 1.31526 * 119.99538 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00549 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46992 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47334 * 210.00280 * 9 7 5 12 12 H 1.48502 * 109.46998 * 330.00093 * 9 7 5 13 13 S 1.65600 * 120.00114 * 93.99975 * 3 2 1 14 14 O 1.42093 * 106.40432 * 336.22530 * 13 3 2 15 15 O 1.42105 * 106.40184 * 203.30452 * 13 3 2 16 16 N 1.65603 * 107.21370 * 89.76680 * 13 3 2 17 17 C 1.46498 * 120.00263 * 65.43372 * 16 13 3 18 18 C 1.53001 * 109.47354 * 164.76199 * 17 16 13 19 19 H 1.09005 * 109.46870 * 304.99573 * 18 17 16 20 20 C 1.52998 * 109.46919 * 64.99625 * 18 17 16 21 21 C 1.53006 * 109.46755 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.46962 * 299.99703 * 21 20 18 23 23 C 1.52998 * 109.47143 * 60.00535 * 22 21 20 24 24 H 1.08993 * 109.47313 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47210 * 59.99308 * 23 22 21 26 26 C 1.52994 * 109.47352 * 184.99826 * 18 17 16 27 27 H 1.09001 * 109.46937 * 65.05325 * 1 2 3 28 28 H 1.09002 * 109.47411 * 185.05405 * 1 2 3 29 29 H 1.08999 * 109.46719 * 305.05511 * 1 2 3 30 30 H 1.09005 * 109.47007 * 239.99665 * 2 1 3 31 31 H 1.08999 * 109.46640 * 119.99809 * 2 1 3 32 32 H 1.09002 * 109.47345 * 40.85397 * 4 3 2 33 33 H 1.09001 * 109.47523 * 160.85093 * 4 3 2 34 34 H 0.97000 * 119.99746 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99356 * 245.42188 * 16 13 3 36 36 H 1.08996 * 109.47320 * 44.75631 * 17 16 13 37 37 H 1.09002 * 109.46967 * 284.75714 * 17 16 13 38 38 H 1.09002 * 109.47150 * 300.00142 * 20 18 17 39 39 H 1.08995 * 109.47437 * 60.00356 * 20 18 17 40 40 H 1.08994 * 109.47381 * 60.00320 * 21 20 18 41 41 H 1.09007 * 109.46512 * 180.02562 * 21 20 18 42 42 H 1.09008 * 109.46919 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.47335 * 300.00006 * 22 21 20 44 44 H 1.08993 * 109.47502 * 300.00521 * 25 23 22 45 45 H 1.09008 * 109.47054 * 60.00415 * 25 23 22 46 46 H 1.09007 * 109.47335 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.47168 * 300.00205 * 26 18 17 48 48 H 1.09004 * 109.47077 * 59.99539 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1791 2.1012 -1.2656 5 6 3.4605 1.6687 -1.9305 6 1 4.0641 0.8915 -1.4856 7 6 3.8622 2.2653 -3.1068 8 7 4.9808 1.8881 -3.6868 9 14 2.8179 3.6091 -3.8768 10 1 3.2451 4.9305 -3.3509 11 1 2.9885 3.5847 -5.3518 12 1 1.3898 3.3805 -3.5399 13 16 2.3888 2.1284 1.4306 14 8 1.6426 1.4593 2.4378 15 8 2.2916 3.5257 1.1904 16 7 3.9845 1.8182 1.7469 17 6 5.0239 2.3551 0.8651 18 6 6.3829 2.2596 1.5615 19 1 6.3317 2.7606 2.5282 20 6 6.7477 0.7882 1.7683 21 6 8.1064 0.6928 2.4653 22 6 9.1726 1.3657 1.5984 23 6 8.8078 2.8371 1.3917 24 1 9.5675 3.3165 0.7745 25 6 8.7353 3.5401 2.7486 26 6 7.4487 2.9324 0.6943 27 1 -0.3633 0.4335 -0.9318 28 1 -0.3634 -1.0237 0.0905 29 1 -0.3633 0.5903 0.8413 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3367 1.8778 -1.9203 33 1 2.2142 3.1733 -1.0718 34 1 5.2633 2.3075 -4.5145 35 1 4.2308 1.2811 2.5161 36 1 4.8045 3.3983 0.6380 37 1 5.0485 1.7792 -0.0600 38 1 5.9883 0.3089 2.3861 39 1 6.7989 0.2872 0.8016 40 1 8.0549 1.1936 3.4320 41 1 8.3665 -0.3555 2.6121 42 1 10.1405 1.2981 2.0952 43 1 9.2242 0.8648 0.6318 44 1 7.9758 3.0607 3.3661 45 1 9.7033 3.4721 3.2452 46 1 8.4758 4.5885 2.6013 47 1 7.4999 2.4314 -0.2725 48 1 7.1887 3.9806 0.5469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336899931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:04 Heat of formation + Delta-G solvation = -129.230058 kcal Electronic energy + Delta-G solvation = -27123.792933 eV Core-core repulsion = 23531.287417 eV Total energy + Delta-G solvation = -3592.505516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28383 -38.33643 -37.76012 -36.90829 -36.31954 -34.61116 -32.54023 -31.83284 -31.77839 -28.90689 -27.57932 -26.22167 -24.57889 -23.24810 -23.11364 -22.05057 -20.33167 -19.45900 -19.02264 -18.59993 -18.40715 -17.36082 -16.71553 -16.41004 -16.08810 -15.54211 -15.37496 -15.18654 -14.80453 -14.65476 -14.56065 -14.40112 -14.09784 -13.80905 -13.73837 -13.49983 -13.42878 -13.23875 -13.10129 -13.05579 -12.75029 -12.62543 -12.59886 -12.34671 -12.30471 -12.20588 -12.09502 -11.85128 -11.81931 -11.69258 -11.56070 -11.11697 -10.83320 -10.78762 -10.71521 -10.29773 -9.76806 -8.23830 -6.25476 -0.28733 1.36519 1.41551 1.47439 1.98444 2.36940 2.60268 3.10987 3.40535 3.78625 3.81777 3.82737 3.94966 4.21621 4.26193 4.38868 4.42304 4.46116 4.53224 4.53916 4.62019 4.66987 4.70025 4.72060 4.85440 4.91533 4.98503 5.02907 5.03695 5.04646 5.11427 5.15199 5.18451 5.23719 5.34520 5.39235 5.40774 5.44330 5.45957 5.50289 5.51078 5.57235 5.73047 5.81687 6.23123 6.37125 6.78148 7.37430 8.89881 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.005682 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.752735 B = 4926.471141 C = 6395.757261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.991 5.991 4 C 0.220 3.780 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.031 3.969 8 N -0.928 5.928 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.249 1.249 13 S 2.798 3.202 14 O -1.002 7.002 15 O -1.017 7.017 16 N -1.112 6.112 17 C 0.122 3.878 18 C -0.082 4.082 19 H 0.089 0.911 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.087 4.087 24 H 0.068 0.932 25 C -0.147 4.147 26 C -0.110 4.110 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.420 0.580 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 -2.553 11.984 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.831 5.831 4 C 0.095 3.905 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.735 3.265 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.173 1.173 13 S 2.806 3.194 14 O -0.986 6.986 15 O -1.000 7.000 16 N -0.875 5.875 17 C -0.005 4.005 18 C -0.102 4.102 19 H 0.107 0.893 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.105 4.105 24 H 0.087 0.913 25 C -0.204 4.204 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.874 -1.893 12.201 12.940 hybrid contribution 0.020 0.324 -1.060 1.109 sum 3.894 -1.569 11.140 11.905 Atomic orbital electron populations 1.22197 0.95463 1.03293 1.01651 1.21242 0.94785 0.81052 1.03273 1.57468 1.79556 1.24224 1.21869 1.19334 0.96946 0.91966 0.82296 1.21521 1.06223 1.21181 1.07416 0.91887 1.25451 0.95647 0.98379 0.97367 1.69992 1.23425 1.43880 1.19520 0.86268 0.81314 0.80758 0.78121 1.20020 1.20771 1.17277 1.01174 0.73121 0.72831 0.72243 1.93537 1.70378 1.76376 1.58338 1.93517 1.86911 1.33536 1.86070 1.55573 1.24174 1.68653 1.39122 1.21444 0.87645 0.98157 0.93204 1.21310 0.91954 0.97493 0.99447 0.89324 1.21575 0.97971 0.94931 1.00598 1.21547 0.93662 1.00888 0.99076 1.21564 0.98967 0.94753 0.99841 1.21061 0.95693 0.96533 0.97247 0.91313 1.21922 1.02363 0.99889 0.96268 1.21548 0.95086 0.99993 0.98249 0.92698 0.89220 0.93386 0.90235 0.89913 0.94194 0.94931 0.92591 0.74397 0.92977 0.91212 0.91239 0.93470 0.90551 0.91287 0.90632 0.93231 0.91825 0.91636 0.93133 0.93555 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 10.24 71.98 0.74 -4.01 16 2 C 0.12 3.95 6.01 86.38 0.52 4.47 16 3 N -0.99 -38.43 2.84 -519.85 -1.48 -39.91 16 4 C 0.22 9.89 4.54 85.63 0.39 10.28 16 5 C -0.52 -26.64 8.50 25.60 0.22 -26.42 16 6 H 0.06 3.42 6.96 -2.92 -0.02 3.40 16 7 C 0.03 1.68 5.47 84.65 0.46 2.14 16 8 N -0.93 -52.93 13.96 21.45 0.30 -52.63 16 9 Si 0.91 41.85 27.40 68.60 1.88 43.73 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.25 -10.76 6.64 99.48 0.66 -10.10 16 13 S 2.80 105.99 6.10 -56.49 -0.34 105.64 16 14 O -1.00 -38.18 17.08 -128.00 -2.19 -40.37 16 15 O -1.02 -45.43 16.10 -128.00 -2.06 -47.49 16 16 N -1.11 -35.54 5.93 -187.50 -1.11 -36.65 16 17 C 0.12 4.26 5.55 86.38 0.48 4.74 16 18 C -0.08 -2.25 2.02 -10.80 -0.02 -2.27 16 19 H 0.09 2.15 6.43 -2.38 -0.02 2.13 16 20 C -0.11 -2.76 5.08 30.60 0.16 -2.61 16 21 C -0.11 -2.21 5.65 30.60 0.17 -2.04 16 22 C -0.11 -2.30 5.45 30.59 0.17 -2.13 16 23 C -0.09 -1.90 3.20 -10.78 -0.03 -1.94 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 C -0.15 -2.71 8.50 71.98 0.61 -2.10 16 26 C -0.11 -3.12 4.74 30.61 0.14 -2.98 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 30 H 0.08 2.65 8.06 -2.38 -0.02 2.63 16 31 H 0.08 2.37 7.65 -2.39 -0.02 2.35 16 32 H 0.04 1.76 7.44 -2.39 -0.02 1.74 16 33 H 0.03 1.55 6.07 -2.39 -0.01 1.54 16 34 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.42 10.74 7.40 -96.75 -0.72 10.02 16 36 H 0.05 2.02 7.74 -2.39 -0.02 2.01 16 37 H 0.07 2.90 5.56 -2.39 -0.01 2.88 16 38 H 0.07 1.52 6.89 -2.39 -0.02 1.51 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.29 6.43 -2.39 -0.02 1.27 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.14 4.81 -2.39 -0.01 1.13 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -63.24 372.60 -0.83 -64.07 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.17 Total: 28.48 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.00 Total: -24.88 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -2.29 Total: -129.19 kcal Atomic # 8 Polarization: -83.61 SS G_CDS: -4.25 Total: -87.86 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Atomic # 16 Polarization: 105.99 SS G_CDS: -0.34 Total: 105.64 kcal Total: -63.24 -0.83 -64.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.162 kcal (2) G-P(sol) polarization free energy of solvation -63.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds