Wall clock time and date at job start Tue Mar 31 2020 12:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47083 * 2 1 4 4 C 1.46501 * 119.99953 * 274.04967 * 3 2 1 5 5 C 1.50697 * 109.47253 * 280.95503 * 4 3 2 6 6 H 1.08002 * 119.99941 * 3.33109 * 5 4 3 7 7 C 1.37880 * 120.00116 * 183.32403 * 5 4 3 8 8 N 1.31518 * 120.00002 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47112 * 60.00527 * 9 7 5 11 11 H 1.48499 * 109.46925 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00390 * 9 7 5 13 13 S 1.65600 * 119.99781 * 94.05374 * 3 2 1 14 14 O 1.42097 * 106.40095 * 336.35884 * 13 3 2 15 15 O 1.42105 * 106.39943 * 203.44013 * 13 3 2 16 16 N 1.65599 * 107.21924 * 89.90572 * 13 3 2 17 17 C 1.46495 * 120.00264 * 65.59603 * 16 13 3 18 18 C 1.53000 * 109.47023 * 164.31174 * 17 16 13 19 19 C 1.52997 * 109.47165 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47648 * 179.97438 * 19 18 17 21 21 C 1.54968 * 110.92211 * 71.53753 * 20 19 18 22 22 C 1.54268 * 104.15797 * 156.30364 * 21 20 19 23 23 C 1.53879 * 106.64109 * 336.44211 * 22 21 20 24 24 C 1.54271 * 106.59545 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47154 * 65.04877 * 1 2 3 26 26 H 1.08990 * 109.47005 * 185.05165 * 1 2 3 27 27 H 1.09001 * 109.46272 * 305.04975 * 1 2 3 28 28 H 1.09001 * 109.46576 * 240.00161 * 2 1 3 29 29 H 1.08991 * 109.47241 * 120.00550 * 2 1 3 30 30 H 1.08994 * 109.47515 * 40.95757 * 4 3 2 31 31 H 1.09004 * 109.46934 * 160.95895 * 4 3 2 32 32 H 0.96996 * 119.99999 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99600 * 245.59152 * 16 13 3 34 34 H 1.08990 * 109.47370 * 44.31001 * 17 16 13 35 35 H 1.09007 * 109.46848 * 284.30727 * 17 16 13 36 36 H 1.08997 * 109.47549 * 59.99530 * 18 17 16 37 37 H 1.08998 * 109.47121 * 299.99593 * 18 17 16 38 38 H 1.09008 * 109.47241 * 59.99960 * 19 18 17 39 39 H 1.08997 * 109.47465 * 299.99896 * 19 18 17 40 40 H 1.09008 * 110.66881 * 308.23790 * 20 19 18 41 41 H 1.08999 * 110.47702 * 37.64660 * 21 20 19 42 42 H 1.09001 * 110.53029 * 274.98000 * 21 20 19 43 43 H 1.09003 * 110.02936 * 217.14118 * 22 21 20 44 44 H 1.08993 * 110.03570 * 95.75697 * 22 21 20 45 45 H 1.08999 * 110.03058 * 119.26482 * 23 22 21 46 46 H 1.08996 * 110.03510 * 240.64490 * 23 22 21 47 47 H 1.09002 * 110.48039 * 142.28555 * 24 23 22 48 48 H 1.08999 * 110.48620 * 264.79229 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1781 2.1017 -1.2656 5 6 3.4577 1.6677 -1.9327 6 1 4.0618 0.8905 -1.4882 7 6 3.8573 2.2626 -3.1106 8 7 3.1219 3.2093 -3.6517 9 14 5.4432 1.7241 -3.9379 10 1 5.3598 0.2804 -4.2755 11 1 5.6460 2.5124 -5.1799 12 1 6.5847 1.9516 -3.0157 13 16 2.3899 2.1280 1.4306 14 8 1.6470 1.4564 2.4386 15 8 2.2894 3.5252 1.1917 16 7 3.9868 1.8210 1.7435 17 6 5.0236 2.3639 0.8623 18 6 6.3821 2.2799 1.5611 19 6 7.4650 2.8463 0.6405 20 6 8.8234 2.7630 1.3394 21 6 9.3131 1.2952 1.4239 22 6 10.8455 1.4156 1.5556 23 6 11.2331 2.7803 0.9595 24 6 9.9227 3.4422 0.4854 25 1 -0.3633 0.4335 -0.9317 26 1 -0.3633 -1.0236 0.0905 27 1 -0.3632 0.5902 0.8414 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3344 1.8798 -1.9190 31 1 2.2151 3.1736 -1.0712 32 1 3.4032 3.6281 -4.4801 33 1 4.2358 1.2817 2.5105 34 1 4.7968 3.4050 0.6329 35 1 5.0539 1.7864 -0.0617 36 1 6.6090 1.2388 1.7906 37 1 6.3518 2.8574 2.4850 38 1 7.2383 3.8875 0.4106 39 1 7.4952 2.2686 -0.2833 40 1 8.7735 3.2107 2.3321 41 1 9.0497 0.7524 0.5161 42 1 8.8926 0.8017 2.3002 43 1 11.3321 0.6139 1.0001 44 1 11.1347 1.3710 2.6055 45 1 11.7096 3.3983 1.7204 46 1 11.9084 2.6408 0.1154 47 1 9.9462 4.5150 0.6770 48 1 9.7594 3.2485 -0.5748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336900875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:15 Heat of formation + Delta-G solvation = -118.066323 kcal Electronic energy + Delta-G solvation = -26211.343120 eV Core-core repulsion = 22619.321700 eV Total energy + Delta-G solvation = -3592.021420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.54977 -36.63720 -36.04925 -35.63322 -35.15223 -32.72519 -32.44773 -29.91138 -28.82097 -28.28081 -26.61825 -24.18475 -23.14224 -21.75739 -21.42831 -20.22397 -19.92459 -18.67198 -17.03905 -16.78000 -16.45563 -15.94472 -15.68801 -15.22874 -14.96335 -14.70621 -14.26171 -13.74600 -13.58061 -13.42154 -13.22569 -12.90766 -12.58939 -12.34136 -12.05226 -11.94823 -11.69175 -11.59199 -11.47517 -11.38464 -11.32117 -11.28049 -11.13886 -11.05903 -10.97281 -10.93239 -10.54959 -10.52698 -10.48527 -10.39643 -10.29876 -10.26804 -10.00430 -9.79864 -8.85890 -8.51527 -8.03694 -6.12606 -4.19126 1.36683 3.22790 3.29595 3.30008 3.61207 4.21989 4.33467 4.49113 4.56651 4.64197 5.02939 5.17246 5.20684 5.24250 5.29999 5.39238 5.45929 5.48872 5.53275 5.57448 5.67363 5.70463 5.78331 5.79677 5.83729 5.87063 5.98047 6.02849 6.09334 6.12203 6.16353 6.19403 6.25772 6.31367 6.36918 6.49171 6.55129 6.68791 6.69869 6.76217 7.33537 7.40410 7.49560 7.70847 7.84960 8.15125 8.84899 9.46040 10.95171 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.004564 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.790978 B = 6133.421651 C = 7782.119467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.131 6.131 17 C 0.113 3.887 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -4.217 9.077 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.122 3.878 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.966 6.966 16 N -0.889 5.889 17 C -0.013 4.013 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.161 4.161 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.656 -3.429 9.266 13.815 hybrid contribution 1.308 -0.750 -0.569 1.611 sum 10.964 -4.179 8.697 14.605 Atomic orbital electron populations 1.22201 0.97048 1.01267 1.02318 1.20942 0.93532 0.82936 1.02060 1.57712 1.78816 1.22970 1.23876 1.19194 0.97123 0.92542 0.78991 1.21481 1.07355 1.21185 1.07764 0.91837 1.24943 0.97044 0.94774 0.96973 1.69924 1.38058 1.24788 1.19734 0.86711 0.83874 0.78678 0.79101 1.20284 1.21265 1.19795 1.01681 0.72662 0.73677 0.72596 1.93537 1.69926 1.76555 1.58721 1.93570 1.86036 1.31318 1.85630 1.55954 1.25632 1.68344 1.38991 1.21503 0.86114 1.00268 0.93414 1.21763 0.94096 1.01315 0.98862 1.21555 0.92879 1.01978 0.98769 1.22158 0.94244 0.95483 0.99007 1.22470 0.94703 0.96817 1.01889 1.22134 0.96456 0.97210 1.00500 1.22125 0.97683 0.96314 1.00123 1.22436 0.94124 0.99415 1.00081 0.92182 0.92450 0.92687 0.90148 0.92070 0.94835 0.92816 0.92518 0.76371 0.90596 0.89207 0.91768 0.91979 0.91394 0.91197 0.90819 0.91390 0.91799 0.92184 0.92213 0.92195 0.92169 0.91809 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.29 6.01 -4.04 -0.02 2.27 16 3 N -0.99 -20.18 2.84 -115.67 -0.33 -20.51 16 4 C 0.24 5.90 5.48 -5.19 -0.03 5.87 16 5 C -0.54 -13.39 7.95 -34.44 -0.27 -13.66 16 6 H 0.06 1.51 6.74 -52.49 -0.35 1.16 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 9 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 S 2.79 55.15 6.11 -107.50 -0.66 54.49 16 14 O -1.00 -20.45 17.09 -57.17 -0.98 -21.43 16 15 O -0.98 -22.94 16.09 -57.17 -0.92 -23.86 16 16 N -1.13 -18.37 6.05 -10.62 -0.06 -18.44 16 17 C 0.11 1.88 6.16 -4.04 -0.02 1.86 16 18 C -0.12 -1.58 5.25 -26.73 -0.14 -1.72 16 19 C -0.11 -1.46 4.72 -26.73 -0.13 -1.58 16 20 C -0.09 -0.98 2.86 -88.59 -0.25 -1.23 16 21 C -0.12 -1.23 5.71 -25.03 -0.14 -1.38 16 22 C -0.13 -1.14 6.80 -25.61 -0.17 -1.32 16 23 C -0.12 -1.14 6.80 -25.61 -0.17 -1.32 16 24 C -0.12 -1.28 6.27 -25.07 -0.16 -1.43 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 28 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 29 H 0.06 0.95 7.65 -51.93 -0.40 0.55 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 1.45 6.83 -51.93 -0.35 1.09 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.40 5.37 8.66 -34.47 -0.30 5.07 16 34 H 0.08 1.41 7.72 -51.93 -0.40 1.01 16 35 H 0.09 1.66 5.60 -51.93 -0.29 1.37 16 36 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 40 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 42 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -29.99 389.01 -11.39 -41.38 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.78 Total: 5.98 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.24 Total: -14.35 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.34 Total: -62.90 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.90 Total: -45.29 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.66 Total: 54.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.99 -11.39 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336900875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.690 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds