Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47083 * 2 1 4 4 C 1.46501 * 119.99953 * 274.04967 * 3 2 1 5 5 C 1.50697 * 109.47253 * 280.95503 * 4 3 2 6 6 H 1.08002 * 119.99941 * 3.33109 * 5 4 3 7 7 C 1.37880 * 120.00116 * 183.32403 * 5 4 3 8 8 N 1.31518 * 120.00002 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47112 * 60.00527 * 9 7 5 11 11 H 1.48499 * 109.46925 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00390 * 9 7 5 13 13 S 1.65600 * 119.99781 * 94.05374 * 3 2 1 14 14 O 1.42097 * 106.40095 * 336.35884 * 13 3 2 15 15 O 1.42105 * 106.39943 * 203.44013 * 13 3 2 16 16 N 1.65599 * 107.21924 * 89.90572 * 13 3 2 17 17 C 1.46495 * 120.00264 * 65.59603 * 16 13 3 18 18 C 1.53000 * 109.47023 * 164.31174 * 17 16 13 19 19 C 1.52997 * 109.47165 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47648 * 179.97438 * 19 18 17 21 21 C 1.54968 * 110.92211 * 71.53753 * 20 19 18 22 22 C 1.54268 * 104.15797 * 156.30364 * 21 20 19 23 23 C 1.53879 * 106.64109 * 336.44211 * 22 21 20 24 24 C 1.54271 * 106.59545 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47154 * 65.04877 * 1 2 3 26 26 H 1.08990 * 109.47005 * 185.05165 * 1 2 3 27 27 H 1.09001 * 109.46272 * 305.04975 * 1 2 3 28 28 H 1.09001 * 109.46576 * 240.00161 * 2 1 3 29 29 H 1.08991 * 109.47241 * 120.00550 * 2 1 3 30 30 H 1.08994 * 109.47515 * 40.95757 * 4 3 2 31 31 H 1.09004 * 109.46934 * 160.95895 * 4 3 2 32 32 H 0.96996 * 119.99999 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99600 * 245.59152 * 16 13 3 34 34 H 1.08990 * 109.47370 * 44.31001 * 17 16 13 35 35 H 1.09007 * 109.46848 * 284.30727 * 17 16 13 36 36 H 1.08997 * 109.47549 * 59.99530 * 18 17 16 37 37 H 1.08998 * 109.47121 * 299.99593 * 18 17 16 38 38 H 1.09008 * 109.47241 * 59.99960 * 19 18 17 39 39 H 1.08997 * 109.47465 * 299.99896 * 19 18 17 40 40 H 1.09008 * 110.66881 * 308.23790 * 20 19 18 41 41 H 1.08999 * 110.47702 * 37.64660 * 21 20 19 42 42 H 1.09001 * 110.53029 * 274.98000 * 21 20 19 43 43 H 1.09003 * 110.02936 * 217.14118 * 22 21 20 44 44 H 1.08993 * 110.03570 * 95.75697 * 22 21 20 45 45 H 1.08999 * 110.03058 * 119.26482 * 23 22 21 46 46 H 1.08996 * 110.03510 * 240.64490 * 23 22 21 47 47 H 1.09002 * 110.48039 * 142.28555 * 24 23 22 48 48 H 1.08999 * 110.48620 * 264.79229 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1781 2.1017 -1.2656 5 6 3.4577 1.6677 -1.9327 6 1 4.0618 0.8905 -1.4882 7 6 3.8573 2.2626 -3.1106 8 7 3.1219 3.2093 -3.6517 9 14 5.4432 1.7241 -3.9379 10 1 5.3598 0.2804 -4.2755 11 1 5.6460 2.5124 -5.1799 12 1 6.5847 1.9516 -3.0157 13 16 2.3899 2.1280 1.4306 14 8 1.6470 1.4564 2.4386 15 8 2.2894 3.5252 1.1917 16 7 3.9868 1.8210 1.7435 17 6 5.0236 2.3639 0.8623 18 6 6.3821 2.2799 1.5611 19 6 7.4650 2.8463 0.6405 20 6 8.8234 2.7630 1.3394 21 6 9.3131 1.2952 1.4239 22 6 10.8455 1.4156 1.5556 23 6 11.2331 2.7803 0.9595 24 6 9.9227 3.4422 0.4854 25 1 -0.3633 0.4335 -0.9317 26 1 -0.3633 -1.0236 0.0905 27 1 -0.3632 0.5902 0.8414 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3344 1.8798 -1.9190 31 1 2.2151 3.1736 -1.0712 32 1 3.4032 3.6281 -4.4801 33 1 4.2358 1.2817 2.5105 34 1 4.7968 3.4050 0.6329 35 1 5.0539 1.7864 -0.0617 36 1 6.6090 1.2388 1.7906 37 1 6.3518 2.8574 2.4850 38 1 7.2383 3.8875 0.4106 39 1 7.4952 2.2686 -0.2833 40 1 8.7735 3.2107 2.3321 41 1 9.0497 0.7524 0.5161 42 1 8.8926 0.8017 2.3002 43 1 11.3321 0.6139 1.0001 44 1 11.1347 1.3710 2.6055 45 1 11.7096 3.3983 1.7204 46 1 11.9084 2.6408 0.1154 47 1 9.9462 4.5150 0.6770 48 1 9.7594 3.2485 -0.5748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336900875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -136.609342 kcal Electronic energy + Delta-G solvation = -26212.147205 eV Core-core repulsion = 22619.321700 eV Total energy + Delta-G solvation = -3592.825505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.39421 -38.31239 -37.68103 -36.92253 -36.86812 -34.65123 -33.55032 -31.50286 -29.62698 -29.25535 -28.46556 -25.29378 -24.92041 -23.29427 -22.59997 -20.99280 -20.81717 -20.21429 -18.63769 -18.56370 -18.22576 -17.27282 -16.75298 -16.71773 -16.14250 -16.05090 -15.62913 -15.21423 -14.83588 -14.61108 -14.45558 -14.25816 -13.84497 -13.75644 -13.61219 -13.47877 -13.28908 -13.15553 -13.01075 -12.88512 -12.71703 -12.67227 -12.46515 -12.26804 -12.13733 -12.08778 -11.90773 -11.86560 -11.74383 -11.55610 -11.40264 -11.31863 -11.22817 -11.20635 -10.53601 -10.30572 -9.76037 -8.12972 -6.25808 -0.24723 1.46241 1.46671 1.53921 2.04470 2.45123 2.64798 3.19187 3.46166 3.68639 3.76666 3.85480 3.99663 4.11757 4.20286 4.27971 4.45061 4.48626 4.53599 4.61852 4.65858 4.70521 4.72854 4.79085 4.82903 4.91482 4.93023 4.98939 5.00931 5.11599 5.14456 5.17000 5.18916 5.28596 5.30372 5.34404 5.39970 5.42961 5.46469 5.55461 5.56256 5.63178 5.80880 5.93048 6.15059 6.29815 6.85523 7.43578 8.95129 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.004564 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.790978 B = 6133.421651 C = 7782.119467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.293 1.293 12 H -0.257 1.257 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.021 7.021 16 N -1.113 6.113 17 C 0.113 3.887 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.087 4.087 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.127 4.127 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.014 0.986 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.422 0.578 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 -6.111 10.486 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.136 3.864 5 C -0.572 4.572 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.569 5.569 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.182 1.182 13 S 2.807 3.193 14 O -0.990 6.990 15 O -1.005 7.005 16 N -0.876 5.876 17 C -0.013 4.013 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.624 -5.362 10.713 16.693 hybrid contribution 0.641 -0.172 -0.961 1.168 sum 12.265 -5.534 9.752 16.618 Atomic orbital electron populations 1.22193 0.96070 1.03140 1.01250 1.21232 0.94494 0.81287 1.03302 1.57618 1.79523 1.24119 1.22456 1.18734 0.96443 0.91069 0.80199 1.21734 1.07270 1.20794 1.07426 0.90569 1.25751 1.00145 0.94784 0.97800 1.70069 1.40080 1.26415 1.20299 0.85735 0.80483 0.78388 0.77969 1.19360 1.21865 1.18155 1.01132 0.73298 0.72713 0.72198 1.93525 1.70620 1.76309 1.58539 1.93524 1.86869 1.33999 1.86105 1.55551 1.24149 1.68390 1.39505 1.21460 0.88055 0.98311 0.93438 1.21717 0.91519 1.02904 0.98880 1.21541 0.94241 1.00989 0.98429 1.22122 0.92905 0.96343 0.99151 1.22476 0.95611 0.96057 1.01815 1.22139 0.95582 0.97184 1.01266 1.22128 0.96977 0.96458 1.00545 1.22459 0.94870 0.99804 0.99334 0.93368 0.89082 0.93669 0.90024 0.89606 0.96762 0.96250 0.92718 0.74203 0.93204 0.90938 0.89761 0.90501 0.92491 0.92734 0.89852 0.92423 0.90850 0.91808 0.91123 0.91215 0.91883 0.91518 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 4.08 6.01 86.38 0.52 4.60 16 3 N -1.00 -40.57 2.84 -519.86 -1.48 -42.05 16 4 C 0.26 12.93 5.48 85.63 0.47 13.40 16 5 C -0.53 -26.72 7.95 25.60 0.20 -26.51 16 6 H 0.08 3.56 6.74 -2.91 -0.02 3.54 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.93 -53.19 13.29 21.45 0.28 -52.90 16 9 Si 0.95 40.66 29.54 68.60 2.03 42.69 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 S 2.80 110.20 6.11 -56.49 -0.34 109.86 16 14 O -1.01 -39.69 17.09 -128.00 -2.19 -41.87 16 15 O -1.02 -49.00 16.09 -128.00 -2.06 -51.05 16 16 N -1.11 -34.75 6.05 -187.50 -1.13 -35.88 16 17 C 0.11 3.72 6.16 86.38 0.53 4.26 16 18 C -0.11 -2.68 5.25 30.59 0.16 -2.52 16 19 C -0.11 -2.80 4.72 30.59 0.14 -2.65 16 20 C -0.09 -1.70 2.86 -9.48 -0.03 -1.73 16 21 C -0.12 -2.18 5.71 31.70 0.18 -2.00 16 22 C -0.12 -1.93 6.80 31.32 0.21 -1.71 16 23 C -0.12 -1.98 6.80 31.32 0.21 -1.77 16 24 C -0.13 -2.45 6.27 31.67 0.20 -2.25 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.46 8.10 -2.39 -0.02 1.45 16 28 H 0.08 2.71 8.05 -2.39 -0.02 2.69 16 29 H 0.09 2.45 7.65 -2.39 -0.02 2.43 16 30 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.02 1.10 6.83 -2.38 -0.02 1.09 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.42 10.14 8.66 -96.75 -0.84 9.30 16 34 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 35 H 0.07 2.65 5.60 -2.38 -0.01 2.64 16 36 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.05 1.50 8.00 -2.39 -0.02 1.48 16 40 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 42 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 Total: -1.00 -65.18 389.01 -0.81 -65.99 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.08 Total: 27.31 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.01 Total: -22.07 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -2.33 Total: -130.84 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -4.25 Total: -92.93 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 110.20 SS G_CDS: -0.34 Total: 109.86 kcal Total: -65.18 -0.81 -65.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336900875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.623 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds