Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46998 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47811 * 119.99362 * 9 7 5 12 12 H 1.48498 * 109.47123 * 239.99516 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46489 * 120.00129 * 89.99663 * 16 13 3 18 18 C 1.46504 * 119.99819 * 269.99910 * 16 13 3 19 19 H 1.09001 * 109.46946 * 359.97438 * 18 16 13 20 20 C 1.53002 * 109.47126 * 240.00030 * 18 16 13 21 21 C 1.52994 * 109.46968 * 179.97438 * 20 18 16 22 22 C 1.53001 * 109.47062 * 60.00099 * 21 20 18 23 23 C 1.52999 * 109.46848 * 299.99588 * 22 21 20 24 24 C 1.52992 * 109.47127 * 119.99548 * 18 16 13 25 25 H 1.09001 * 109.47014 * 60.00278 * 24 18 16 26 26 C 1.53002 * 109.47511 * 300.00246 * 24 18 16 27 27 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 29 29 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 32 32 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 33 33 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47302 * 90.00098 * 17 16 13 36 36 H 1.09005 * 109.47350 * 210.00090 * 17 16 13 37 37 H 1.08996 * 109.47412 * 330.00152 * 17 16 13 38 38 H 1.08995 * 109.46580 * 299.99853 * 20 18 16 39 39 H 1.09005 * 109.47051 * 59.99578 * 20 18 16 40 40 H 1.09004 * 109.46828 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.47486 * 299.99465 * 21 20 18 42 42 H 1.09001 * 109.47384 * 59.99827 * 22 21 20 43 43 H 1.09000 * 109.47282 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46751 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.47289 * 299.99794 * 23 22 21 46 46 H 1.09000 * 109.46879 * 59.99705 * 26 24 18 47 47 H 1.09005 * 109.47051 * 180.02562 * 26 24 18 48 48 H 1.08995 * 109.46580 * 299.99900 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6916 9 14 5.5093 1.9644 -3.8513 10 1 6.2453 1.0165 -2.9766 11 1 5.3018 1.3476 -5.1861 12 1 6.2978 3.2138 -4.0006 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.1234 2.1390 2.8694 18 6 0.7515 4.2477 1.6055 19 1 1.5424 4.6181 0.9533 20 6 0.6754 5.1200 2.8602 21 6 0.3716 6.5648 2.4591 22 6 -0.9664 6.6181 1.7191 23 6 -0.8903 5.7458 0.4644 24 6 -0.5867 4.3004 0.8657 25 1 -1.3774 3.9302 1.5182 26 6 -0.5106 3.4281 -0.3890 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5888 -4.5374 35 1 0.4144 2.2962 3.9079 36 1 -0.8914 2.5066 2.7168 37 1 0.1628 1.0746 2.6381 38 1 -0.1152 4.7497 3.5126 39 1 1.6289 5.0823 3.3872 40 1 0.3170 7.1862 3.3530 41 1 1.1626 6.9349 1.8069 42 1 -1.7574 6.2481 2.3714 43 1 -1.1831 7.6475 1.4337 44 1 -1.8435 5.7841 -0.0631 45 1 -0.0993 6.1159 -0.1880 46 1 -0.2937 2.3988 -0.1033 47 1 -1.4639 3.4661 -0.9163 48 1 0.2801 3.7984 -1.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -96.014828 kcal Electronic energy + Delta-G solvation = -28196.538551 eV Core-core repulsion = 24605.473356 eV Total energy + Delta-G solvation = -3591.065195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.23465 -36.65618 -36.08883 -35.12535 -34.88970 -32.65349 -32.27303 -30.04090 -29.59905 -26.81932 -26.36507 -25.52575 -23.09285 -22.21467 -21.70980 -21.02638 -19.43386 -18.33391 -17.36362 -16.71710 -16.28143 -16.03024 -15.20534 -14.53532 -14.46082 -14.39193 -14.17417 -13.84753 -13.68515 -13.39764 -13.05209 -12.83042 -12.70795 -12.47424 -12.16512 -11.99488 -11.89890 -11.71309 -11.64666 -11.49765 -11.38571 -11.25543 -11.14453 -10.97558 -10.94268 -10.84481 -10.78118 -10.48627 -10.38735 -10.23728 -10.15792 -10.00761 -9.92446 -9.66216 -8.68747 -8.41942 -8.01243 -6.04770 -4.07844 1.24472 3.31643 3.39531 3.44546 3.50668 4.12576 4.46431 4.70874 4.80309 4.84317 5.00084 5.11365 5.25646 5.26762 5.31455 5.44876 5.48540 5.53080 5.56609 5.62014 5.67544 5.70587 5.73551 5.77007 5.83578 5.88055 6.01741 6.06105 6.08290 6.14344 6.20860 6.24742 6.27454 6.34037 6.37612 6.45491 6.60686 6.64376 6.64723 6.83141 6.91368 7.28534 7.46294 7.67162 7.93485 8.24304 8.94725 9.57213 11.03494 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.005811 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.743904 B = 4817.353294 C = 5541.028815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.776 3.224 14 O -0.998 6.998 15 O -0.963 6.963 16 N -1.008 6.008 17 C 0.096 3.904 18 C 0.154 3.846 19 H 0.102 0.898 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.095 4.095 25 H 0.068 0.932 26 C -0.167 4.167 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 2.117 10.825 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.010 4.010 3 N -0.832 5.832 4 C 0.139 3.861 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.785 3.215 14 O -0.982 6.982 15 O -0.947 6.947 16 N -0.845 5.845 17 C -0.050 4.050 18 C 0.047 3.953 19 H 0.120 0.880 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.115 4.115 25 H 0.087 0.913 26 C -0.224 4.224 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.876 2.202 11.090 15.688 hybrid contribution 0.447 -0.164 -0.751 0.889 sum -10.429 2.038 10.339 14.826 Atomic orbital electron populations 1.22391 0.97407 1.01403 1.02164 1.21131 0.92973 0.83405 1.03444 1.57787 1.80867 1.21260 1.23267 1.19101 0.97083 0.91064 0.78871 1.21572 1.02197 1.27480 1.05464 0.92273 1.24900 0.97243 0.94885 0.96901 1.69916 1.35958 1.30364 1.17161 0.86502 0.84079 0.78324 0.78895 1.19706 1.21031 1.20867 1.02154 0.73402 0.73062 0.72838 1.93508 1.83425 1.57852 1.63438 1.93610 1.59363 1.57629 1.84107 1.58194 1.42789 1.21789 1.61731 1.21351 0.94115 0.95972 0.93566 1.20949 0.98300 0.80168 0.95843 0.87991 1.21844 1.01943 0.94860 0.97605 1.21524 0.97833 0.96176 1.00176 1.21547 0.97332 0.99589 0.97120 1.21611 1.01992 0.94340 0.97360 1.21432 0.96968 0.95650 0.97478 0.91343 1.22237 1.02249 1.00945 0.96956 0.92295 0.93072 0.91712 0.89766 0.90760 0.94717 0.94350 0.92843 0.93121 0.91359 0.91408 0.91762 0.91702 0.92046 0.91463 0.92312 0.92182 0.91886 0.91316 0.91099 0.93260 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.87 37.16 0.33 -2.05 16 2 C 0.12 2.00 6.40 -4.04 -0.03 1.98 16 3 N -0.99 -20.12 2.07 -115.65 -0.24 -20.36 16 4 C 0.26 6.27 3.31 -5.19 -0.02 6.25 16 5 C -0.53 -14.62 9.38 -34.44 -0.32 -14.95 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 S 2.78 56.17 6.01 -107.50 -0.65 55.52 16 14 O -1.00 -21.20 15.76 -57.17 -0.90 -22.10 16 15 O -0.96 -23.27 15.67 -57.17 -0.90 -24.17 16 16 N -1.01 -15.57 2.36 -114.62 -0.27 -15.84 16 17 C 0.10 1.16 8.82 59.84 0.53 1.69 16 18 C 0.15 2.25 1.95 -67.93 -0.13 2.12 16 19 H 0.10 1.80 6.91 -51.93 -0.36 1.44 16 20 C -0.12 -1.51 5.20 -26.73 -0.14 -1.65 16 21 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 22 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 23 C -0.11 -1.34 5.21 -26.71 -0.14 -1.48 16 24 C -0.10 -1.22 2.09 -90.60 -0.19 -1.41 16 25 H 0.07 0.78 6.66 -51.93 -0.35 0.43 16 26 C -0.17 -2.48 8.12 37.16 0.30 -2.18 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.64 5.53 -51.93 -0.29 0.35 16 29 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 30 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 31 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.04 0.98 6.19 -51.93 -0.32 0.66 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 37 H 0.07 0.81 6.23 -51.93 -0.32 0.49 16 38 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.06 3.65 -51.93 -0.19 0.87 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.29 6.13 -51.93 -0.32 0.97 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -31.82 366.23 -10.18 -42.00 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.24 Total: 0.26 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.22 Total: -12.81 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.23 Total: -61.04 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.80 Total: -46.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 56.17 SS G_CDS: -0.65 Total: 55.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.82 -10.18 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.011 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds