Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46998 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47811 * 119.99362 * 9 7 5 12 12 H 1.48498 * 109.47123 * 239.99516 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46489 * 120.00129 * 89.99663 * 16 13 3 18 18 C 1.46504 * 119.99819 * 269.99910 * 16 13 3 19 19 H 1.09001 * 109.46946 * 359.97438 * 18 16 13 20 20 C 1.53002 * 109.47126 * 240.00030 * 18 16 13 21 21 C 1.52994 * 109.46968 * 179.97438 * 20 18 16 22 22 C 1.53001 * 109.47062 * 60.00099 * 21 20 18 23 23 C 1.52999 * 109.46848 * 299.99588 * 22 21 20 24 24 C 1.52992 * 109.47127 * 119.99548 * 18 16 13 25 25 H 1.09001 * 109.47014 * 60.00278 * 24 18 16 26 26 C 1.53002 * 109.47511 * 300.00246 * 24 18 16 27 27 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 29 29 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 32 32 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 33 33 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47302 * 90.00098 * 17 16 13 36 36 H 1.09005 * 109.47350 * 210.00090 * 17 16 13 37 37 H 1.08996 * 109.47412 * 330.00152 * 17 16 13 38 38 H 1.08995 * 109.46580 * 299.99853 * 20 18 16 39 39 H 1.09005 * 109.47051 * 59.99578 * 20 18 16 40 40 H 1.09004 * 109.46828 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.47486 * 299.99465 * 21 20 18 42 42 H 1.09001 * 109.47384 * 59.99827 * 22 21 20 43 43 H 1.09000 * 109.47282 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46751 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.47289 * 299.99794 * 23 22 21 46 46 H 1.09000 * 109.46879 * 59.99705 * 26 24 18 47 47 H 1.09005 * 109.47051 * 180.02562 * 26 24 18 48 48 H 1.08995 * 109.46580 * 299.99900 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6916 9 14 5.5093 1.9644 -3.8513 10 1 6.2453 1.0165 -2.9766 11 1 5.3018 1.3476 -5.1861 12 1 6.2978 3.2138 -4.0006 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.1234 2.1390 2.8694 18 6 0.7515 4.2477 1.6055 19 1 1.5424 4.6181 0.9533 20 6 0.6754 5.1200 2.8602 21 6 0.3716 6.5648 2.4591 22 6 -0.9664 6.6181 1.7191 23 6 -0.8903 5.7458 0.4644 24 6 -0.5867 4.3004 0.8657 25 1 -1.3774 3.9302 1.5182 26 6 -0.5106 3.4281 -0.3890 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5888 -4.5374 35 1 0.4144 2.2962 3.9079 36 1 -0.8914 2.5066 2.7168 37 1 0.1628 1.0746 2.6381 38 1 -0.1152 4.7497 3.5126 39 1 1.6289 5.0823 3.3872 40 1 0.3170 7.1862 3.3530 41 1 1.1626 6.9349 1.8069 42 1 -1.7574 6.2481 2.3714 43 1 -1.1831 7.6475 1.4337 44 1 -1.8435 5.7841 -0.0631 45 1 -0.0993 6.1159 -0.1880 46 1 -0.2937 2.3988 -0.1033 47 1 -1.4639 3.4661 -0.9163 48 1 0.2801 3.7984 -1.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -116.105923 kcal Electronic energy + Delta-G solvation = -28197.409767 eV Core-core repulsion = 24605.473356 eV Total energy + Delta-G solvation = -3591.936410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29859 -38.35004 -37.71928 -36.85693 -35.99190 -34.71043 -33.31025 -31.55438 -30.62834 -28.53979 -27.62689 -26.64107 -24.88300 -23.35282 -23.12992 -22.03822 -20.48827 -19.81740 -18.98334 -18.35642 -18.24695 -17.45208 -16.75605 -16.15015 -15.72861 -15.44354 -15.29269 -15.06325 -14.93843 -14.76809 -14.66746 -14.02098 -13.89187 -13.74177 -13.70631 -13.40718 -13.34507 -13.25799 -13.08543 -12.97039 -12.83052 -12.76102 -12.66623 -12.49466 -12.35986 -12.14663 -12.13777 -11.99872 -11.71651 -11.62019 -11.57958 -11.26875 -11.18770 -11.00044 -10.57859 -9.87071 -9.72458 -8.19593 -6.30601 -0.33433 1.35426 1.38235 1.49387 2.03575 2.38791 2.58899 3.10763 3.37623 3.63551 3.85126 3.87576 4.01875 4.15099 4.25980 4.29274 4.45774 4.47975 4.50141 4.56611 4.58528 4.63286 4.68084 4.73544 4.81216 4.89334 4.96039 4.97588 5.03163 5.09824 5.14002 5.17325 5.22140 5.27396 5.30130 5.34715 5.39388 5.45220 5.46342 5.54024 5.56094 5.68664 5.73608 5.76408 6.04091 6.15493 6.77736 7.37666 8.87236 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.005811 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.743904 B = 4817.353294 C = 5541.028815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.995 5.995 4 C 0.286 3.714 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.280 1.280 13 S 2.783 3.217 14 O -1.011 7.011 15 O -1.013 7.013 16 N -0.997 5.997 17 C 0.084 3.916 18 C 0.150 3.850 19 H 0.059 0.941 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.087 4.087 25 H 0.100 0.900 26 C -0.165 4.165 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 1.878 12.334 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.836 5.836 4 C 0.163 3.837 5 C -0.590 4.590 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.206 1.206 13 S 2.794 3.206 14 O -0.994 6.994 15 O -0.997 6.997 16 N -0.838 5.838 17 C -0.060 4.060 18 C 0.044 3.956 19 H 0.077 0.923 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.106 4.106 25 H 0.118 0.882 26 C -0.222 4.222 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.257 1.932 12.605 18.395 hybrid contribution 1.168 -0.100 -1.178 1.662 sum -12.089 1.832 11.427 16.736 Atomic orbital electron populations 1.22305 0.94268 1.03397 1.02416 1.21374 0.95645 0.81546 1.03187 1.57670 1.81458 1.22526 1.21943 1.18543 0.95081 0.90116 0.79972 1.21927 1.03633 1.27461 1.06024 0.93577 1.25661 1.00552 0.94799 0.97435 1.70002 1.37424 1.30909 1.17550 0.85621 0.80075 0.78135 0.78555 1.19761 1.19379 1.20599 1.01628 0.74003 0.72349 0.72640 1.93477 1.84201 1.58300 1.63466 1.93541 1.62211 1.59143 1.84798 1.57799 1.42149 1.22065 1.61764 1.21724 0.94872 0.95972 0.93470 1.21050 0.98001 0.79762 0.96823 0.92301 1.21846 1.02327 0.95282 0.96398 1.21551 0.97906 0.95418 1.00879 1.21519 0.97168 0.99972 0.96197 1.21624 1.01718 0.93832 0.98210 1.21413 0.96482 0.96176 0.96576 0.88213 1.22195 1.01428 1.01080 0.97534 0.89382 0.91490 0.92744 0.90989 0.90059 0.95510 0.96548 0.92492 0.91672 0.88045 0.91071 0.88931 0.93077 0.89810 0.93582 0.90051 0.90996 0.90364 0.94030 0.91295 0.91739 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.87 71.99 0.64 -3.59 16 2 C 0.11 3.70 6.40 86.38 0.55 4.25 16 3 N -1.00 -41.71 2.07 -519.82 -1.08 -42.79 16 4 C 0.29 14.49 3.31 85.64 0.28 14.78 16 5 C -0.55 -31.82 9.38 25.60 0.24 -31.58 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.87 5.46 84.65 0.46 1.34 16 8 N -0.92 -54.09 13.29 21.45 0.28 -53.81 16 9 Si 0.95 45.57 29.54 68.60 2.03 47.59 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 S 2.78 115.66 6.01 -56.49 -0.34 115.32 16 14 O -1.01 -43.04 15.76 -128.00 -2.02 -45.06 16 15 O -1.01 -51.87 15.67 -128.00 -2.01 -53.88 16 16 N -1.00 -30.11 2.36 -516.54 -1.22 -31.33 16 17 C 0.08 1.77 8.82 127.77 1.13 2.90 16 18 C 0.15 4.36 1.95 44.99 0.09 4.44 16 19 H 0.06 2.24 6.91 -2.39 -0.02 2.22 16 20 C -0.12 -2.72 5.20 30.59 0.16 -2.56 16 21 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 22 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 23 C -0.12 -2.54 5.21 30.61 0.16 -2.38 16 24 C -0.09 -2.08 2.09 -10.78 -0.02 -2.11 16 25 H 0.10 1.82 6.66 -2.39 -0.02 1.81 16 26 C -0.17 -4.90 8.12 71.98 0.58 -4.32 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.49 5.53 -2.39 -0.01 1.47 16 29 H 0.05 1.52 7.46 -2.39 -0.02 1.50 16 30 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 31 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 32 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.02 0.91 6.19 -2.39 -0.01 0.90 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.50 6.43 -2.38 -0.02 1.49 16 37 H 0.07 1.48 6.23 -2.39 -0.01 1.47 16 38 H 0.09 1.60 7.67 -2.39 -0.02 1.58 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.07 2.03 3.65 -2.39 -0.01 2.02 16 47 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 48 H 0.03 1.14 6.13 -2.39 -0.01 1.13 16 Total: -1.00 -72.36 366.23 1.21 -71.15 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.93 Total: 15.55 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.63 Total: -22.75 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -2.01 Total: -127.93 kcal Atomic # 8 Polarization: -94.91 SS G_CDS: -4.02 Total: -98.94 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 115.66 SS G_CDS: -0.34 Total: 115.32 kcal Total: -72.36 1.21 -71.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.954 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds