Wall clock time and date at job start Tue Mar 31 2020 12:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47108 * 2 1 4 4 C 1.46504 * 120.00057 * 274.99807 * 3 2 1 5 5 C 1.50694 * 109.47269 * 275.00469 * 4 3 2 6 6 H 1.08004 * 120.00288 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99989 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00074 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46845 * 89.99766 * 9 7 5 11 11 H 1.48496 * 109.47257 * 210.00108 * 9 7 5 12 12 H 1.48499 * 109.46973 * 329.99913 * 9 7 5 13 13 S 1.65603 * 119.99917 * 95.00126 * 3 2 1 14 14 O 1.42102 * 106.40066 * 156.46196 * 13 3 2 15 15 O 1.42092 * 106.40323 * 23.53885 * 13 3 2 16 16 N 1.65599 * 107.21380 * 269.99797 * 13 3 2 17 17 C 1.44577 * 118.64327 * 90.00589 * 16 13 3 18 18 C 1.54863 * 109.60567 * 89.24428 * 17 16 13 19 19 C 1.47098 * 110.31689 * 71.26835 * 18 17 16 20 20 H 1.09004 * 108.39125 * 58.35993 * 19 18 17 21 21 C 1.53001 * 108.51262 * 175.93984 * 19 18 17 22 22 C 1.52566 * 114.32760 * 297.19678 * 19 18 17 23 23 C 1.50879 * 109.35740 * 85.01586 * 22 19 18 24 24 H 1.09007 * 109.36409 * 148.05182 * 23 22 19 25 25 C 1.52997 * 109.37008 * 28.30735 * 23 22 19 26 26 C 1.47607 * 118.64345 * 269.97467 * 16 13 3 27 27 H 1.08997 * 109.47011 * 300.00006 * 1 2 3 28 28 H 1.09001 * 109.46893 * 60.00085 * 1 2 3 29 29 H 1.09005 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46998 * 239.99969 * 2 1 3 31 31 H 1.08991 * 109.47395 * 120.00097 * 2 1 3 32 32 H 1.09006 * 109.46664 * 35.00420 * 4 3 2 33 33 H 1.09002 * 109.46944 * 154.99616 * 4 3 2 34 34 H 0.96997 * 120.00136 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.44437 * 329.20743 * 17 16 13 36 36 H 1.09003 * 109.42829 * 209.27979 * 17 16 13 37 37 H 1.08996 * 109.33188 * 311.00910 * 18 17 16 38 38 H 1.08998 * 109.18672 * 191.43818 * 18 17 16 39 39 H 1.08997 * 109.46975 * 184.77043 * 21 19 18 40 40 H 1.08997 * 109.47087 * 304.76564 * 21 19 18 41 41 H 1.08998 * 109.46936 * 64.76446 * 21 19 18 42 42 H 1.09001 * 109.48623 * 325.05131 * 22 19 18 43 43 H 1.09001 * 109.49158 * 204.98426 * 22 19 18 44 44 H 1.08999 * 109.46771 * 58.95387 * 25 23 22 45 45 H 1.08998 * 109.46799 * 298.95026 * 25 23 22 46 46 H 1.08998 * 109.47004 * 178.95534 * 25 23 22 47 47 H 1.09002 * 108.94484 * 101.47138 * 26 16 13 48 48 H 1.08998 * 108.95071 * 342.84704 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1724 1.1116 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6915 9 14 5.5098 1.9654 -3.8507 10 1 5.3747 0.7825 -4.7382 11 1 5.9788 3.1292 -4.6449 12 1 6.4933 1.6696 -2.7780 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0800 2.3499 16 7 1.0431 2.8642 1.9894 17 6 0.1560 2.1212 2.8561 18 6 0.5857 2.3174 4.3309 19 6 0.2757 3.6848 4.7756 20 1 -0.7950 3.8507 4.6566 21 6 0.6217 3.8027 6.2614 22 6 1.0224 4.7772 4.0162 23 6 0.2661 5.1161 2.7554 24 1 0.4107 6.1705 2.5196 25 6 -1.2242 4.8437 2.9689 26 6 0.7792 4.2588 1.5842 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3617 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2798 3.5889 -4.5373 35 1 0.2034 1.0622 2.6021 36 1 -0.8646 2.4806 2.7245 37 1 1.6580 2.1433 4.4206 38 1 0.0508 1.6041 4.9579 39 1 0.3194 4.7836 6.6281 40 1 0.0956 3.0282 6.8195 41 1 1.6965 3.6801 6.3949 42 1 2.0204 4.4231 3.7576 43 1 1.1024 5.6658 4.6424 44 1 -1.5875 5.4446 3.8026 45 1 -1.3722 3.7869 3.1910 46 1 -1.7745 5.1056 2.0652 47 1 0.0325 4.2613 0.7901 48 1 1.7012 4.6969 1.2021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336910003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:53 Heat of formation + Delta-G solvation = -76.519692 kcal Electronic energy + Delta-G solvation = -27806.177182 eV Core-core repulsion = 24215.957360 eV Total energy + Delta-G solvation = -3590.219823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.77060 -36.69616 -36.00516 -35.10175 -34.56093 -33.50827 -32.64740 -29.97941 -29.10447 -26.80848 -26.57064 -25.68200 -23.35852 -23.10500 -21.69435 -21.11858 -18.78752 -18.14656 -17.34773 -16.75803 -16.43290 -16.23765 -15.30622 -15.03917 -14.44981 -14.36360 -14.25443 -13.88450 -13.51429 -13.40713 -13.22161 -13.01528 -12.85333 -12.55584 -12.13223 -12.04683 -11.93444 -11.77750 -11.69051 -11.61784 -11.50106 -11.32147 -11.22081 -10.99108 -10.89485 -10.85789 -10.58927 -10.48006 -10.43384 -10.36958 -10.22927 -9.95776 -9.78738 -9.71057 -8.72444 -8.42129 -8.02657 -6.04748 -4.08295 1.26308 3.32449 3.38816 3.44801 3.52596 4.10186 4.46214 4.63437 4.71716 4.77940 4.89774 5.02630 5.10824 5.14808 5.24151 5.30565 5.39146 5.51083 5.54878 5.62063 5.62752 5.65813 5.71902 5.75283 5.76763 5.83469 5.88431 5.91769 6.00573 6.05726 6.08379 6.17420 6.27069 6.29197 6.34745 6.35247 6.41898 6.53166 6.62439 6.66399 6.97374 7.27531 7.45411 7.66695 7.93286 8.23347 8.94039 9.56792 11.03775 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.004535 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.634416 B = 6172.506324 C = 6455.233298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.774 3.226 14 O -0.966 6.966 15 O -0.996 6.996 16 N -1.000 6.000 17 C 0.119 3.881 18 C -0.135 4.135 19 C -0.105 4.105 20 H 0.083 0.917 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.097 4.097 24 H 0.080 0.920 25 C -0.160 4.160 26 C 0.118 3.882 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 0.572 14.719 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.783 3.217 14 O -0.949 6.949 15 O -0.980 6.980 16 N -0.838 5.838 17 C -0.007 4.007 18 C -0.174 4.174 19 C -0.123 4.123 20 H 0.101 0.899 21 C -0.207 4.207 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.098 0.902 25 C -0.217 4.217 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.301 0.709 14.966 18.182 hybrid contribution 0.522 -0.114 -0.763 0.932 sum -9.779 0.594 14.203 17.254 Atomic orbital electron populations 1.22311 0.97324 1.01368 1.02138 1.21131 0.93035 0.83397 1.03414 1.57784 1.80958 1.21309 1.23260 1.18995 0.97237 0.91039 0.79003 1.21498 1.02105 1.27559 1.05500 0.92285 1.24914 0.97318 0.94825 0.96884 1.69916 1.36130 1.30308 1.17178 0.86537 0.84134 0.77833 0.79216 1.20633 1.21060 1.19721 1.02232 0.73508 0.73137 0.72810 1.93601 1.59565 1.57599 1.84156 1.93507 1.83394 1.57853 1.63202 1.57762 1.43336 1.21402 1.61331 1.21371 0.94783 0.95438 0.89119 1.21365 1.02968 0.96583 0.96502 1.20317 1.01941 0.95244 0.94847 0.89858 1.21979 1.01566 1.01079 0.96051 1.21119 0.99602 0.97907 0.95647 1.21152 0.95551 0.99594 0.95415 0.90174 1.22340 0.95538 1.02592 1.01221 1.21765 1.02649 0.80275 0.95987 0.93205 0.91954 0.92291 0.89837 0.90716 0.94810 0.94644 0.92745 0.90646 0.89911 0.91193 0.91164 0.93062 0.93020 0.92917 0.91796 0.92016 0.92782 0.90714 0.92881 0.91774 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.12 2.04 6.40 -4.04 -0.03 2.02 16 3 N -0.99 -20.63 2.83 -115.66 -0.33 -20.95 16 4 C 0.26 6.46 5.10 -5.19 -0.03 6.43 16 5 C -0.53 -14.85 9.38 -34.44 -0.32 -15.17 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 S 2.77 55.90 5.94 -107.50 -0.64 55.26 16 14 O -0.97 -23.29 15.48 -57.17 -0.88 -24.17 16 15 O -1.00 -20.71 14.93 -57.17 -0.85 -21.56 16 16 N -1.00 -15.29 2.59 -113.30 -0.29 -15.59 16 17 C 0.12 1.48 4.64 -4.09 -0.02 1.46 16 18 C -0.13 -1.59 4.85 -28.58 -0.14 -1.73 16 19 C -0.11 -1.09 2.00 -93.67 -0.19 -1.28 16 20 H 0.08 0.76 4.65 -51.93 -0.24 0.52 16 21 C -0.15 -1.40 8.88 37.16 0.33 -1.07 16 22 C -0.11 -1.22 4.81 -28.02 -0.13 -1.35 16 23 C -0.10 -1.09 3.13 -91.19 -0.29 -1.38 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.16 -1.49 7.49 37.16 0.28 -1.21 16 26 C 0.12 1.69 5.73 -2.94 -0.02 1.67 16 27 H 0.05 0.63 5.83 -51.93 -0.30 0.33 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.51 8.11 -51.92 -0.42 1.09 16 31 H 0.07 1.25 6.91 -51.93 -0.36 0.89 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.08 0.94 6.03 -51.93 -0.31 0.63 16 36 H 0.08 0.85 5.21 -51.93 -0.27 0.58 16 37 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 38 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 43 H 0.06 0.63 7.80 -51.93 -0.41 0.23 16 44 H 0.05 0.44 7.89 -51.93 -0.41 0.03 16 45 H 0.07 0.68 3.16 -51.93 -0.16 0.52 16 46 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 47 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 48 H 0.09 1.57 6.66 -51.93 -0.35 1.22 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -32.31 365.98 -10.19 -42.50 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.16 Total: -0.65 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.27 Total: -11.95 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.12 Total: -61.85 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.74 Total: -45.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.64 Total: 55.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.31 -10.19 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.019 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds