Wall clock time and date at job start Tue Mar 31 2020 12:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47108 * 2 1 4 4 C 1.46504 * 120.00057 * 274.99807 * 3 2 1 5 5 C 1.50694 * 109.47269 * 275.00469 * 4 3 2 6 6 H 1.08004 * 120.00288 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99989 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00074 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46845 * 89.99766 * 9 7 5 11 11 H 1.48496 * 109.47257 * 210.00108 * 9 7 5 12 12 H 1.48499 * 109.46973 * 329.99913 * 9 7 5 13 13 S 1.65603 * 119.99917 * 95.00126 * 3 2 1 14 14 O 1.42102 * 106.40066 * 156.46196 * 13 3 2 15 15 O 1.42092 * 106.40323 * 23.53885 * 13 3 2 16 16 N 1.65599 * 107.21380 * 269.99797 * 13 3 2 17 17 C 1.44577 * 118.64327 * 90.00589 * 16 13 3 18 18 C 1.54863 * 109.60567 * 89.24428 * 17 16 13 19 19 C 1.47098 * 110.31689 * 71.26835 * 18 17 16 20 20 H 1.09004 * 108.39125 * 58.35993 * 19 18 17 21 21 C 1.53001 * 108.51262 * 175.93984 * 19 18 17 22 22 C 1.52566 * 114.32760 * 297.19678 * 19 18 17 23 23 C 1.50879 * 109.35740 * 85.01586 * 22 19 18 24 24 H 1.09007 * 109.36409 * 148.05182 * 23 22 19 25 25 C 1.52997 * 109.37008 * 28.30735 * 23 22 19 26 26 C 1.47607 * 118.64345 * 269.97467 * 16 13 3 27 27 H 1.08997 * 109.47011 * 300.00006 * 1 2 3 28 28 H 1.09001 * 109.46893 * 60.00085 * 1 2 3 29 29 H 1.09005 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46998 * 239.99969 * 2 1 3 31 31 H 1.08991 * 109.47395 * 120.00097 * 2 1 3 32 32 H 1.09006 * 109.46664 * 35.00420 * 4 3 2 33 33 H 1.09002 * 109.46944 * 154.99616 * 4 3 2 34 34 H 0.96997 * 120.00136 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.44437 * 329.20743 * 17 16 13 36 36 H 1.09003 * 109.42829 * 209.27979 * 17 16 13 37 37 H 1.08996 * 109.33188 * 311.00910 * 18 17 16 38 38 H 1.08998 * 109.18672 * 191.43818 * 18 17 16 39 39 H 1.08997 * 109.46975 * 184.77043 * 21 19 18 40 40 H 1.08997 * 109.47087 * 304.76564 * 21 19 18 41 41 H 1.08998 * 109.46936 * 64.76446 * 21 19 18 42 42 H 1.09001 * 109.48623 * 325.05131 * 22 19 18 43 43 H 1.09001 * 109.49158 * 204.98426 * 22 19 18 44 44 H 1.08999 * 109.46771 * 58.95387 * 25 23 22 45 45 H 1.08998 * 109.46799 * 298.95026 * 25 23 22 46 46 H 1.08998 * 109.47004 * 178.95534 * 25 23 22 47 47 H 1.09002 * 108.94484 * 101.47138 * 26 16 13 48 48 H 1.08998 * 108.95071 * 342.84704 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1724 1.1116 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6915 9 14 5.5098 1.9654 -3.8507 10 1 5.3747 0.7825 -4.7382 11 1 5.9788 3.1292 -4.6449 12 1 6.4933 1.6696 -2.7780 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0800 2.3499 16 7 1.0431 2.8642 1.9894 17 6 0.1560 2.1212 2.8561 18 6 0.5857 2.3174 4.3309 19 6 0.2757 3.6848 4.7756 20 1 -0.7950 3.8507 4.6566 21 6 0.6217 3.8027 6.2614 22 6 1.0224 4.7772 4.0162 23 6 0.2661 5.1161 2.7554 24 1 0.4107 6.1705 2.5196 25 6 -1.2242 4.8437 2.9689 26 6 0.7792 4.2588 1.5842 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3617 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2798 3.5889 -4.5373 35 1 0.2034 1.0622 2.6021 36 1 -0.8646 2.4806 2.7245 37 1 1.6580 2.1433 4.4206 38 1 0.0508 1.6041 4.9579 39 1 0.3194 4.7836 6.6281 40 1 0.0956 3.0282 6.8195 41 1 1.6965 3.6801 6.3949 42 1 2.0204 4.4231 3.7576 43 1 1.1024 5.6658 4.6424 44 1 -1.5875 5.4446 3.8026 45 1 -1.3722 3.7869 3.1910 46 1 -1.7745 5.1056 2.0652 47 1 0.0325 4.2613 0.7901 48 1 1.7012 4.6969 1.2021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336910003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:52 Heat of formation + Delta-G solvation = -97.222517 kcal Electronic energy + Delta-G solvation = -27807.074924 eV Core-core repulsion = 24215.957360 eV Total energy + Delta-G solvation = -3591.117564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73352 -38.38738 -37.67443 -36.83230 -35.64016 -34.72777 -34.45972 -31.54489 -30.03595 -28.50366 -27.59621 -26.77414 -24.94730 -24.29986 -23.26370 -22.18267 -19.75369 -19.60879 -18.90491 -18.37712 -18.27660 -17.58957 -16.89482 -16.24901 -16.12808 -15.57509 -15.22275 -15.20860 -14.87894 -14.67803 -14.43409 -14.16998 -14.07826 -13.81763 -13.58618 -13.38365 -13.36022 -13.26296 -13.09278 -13.03191 -12.76745 -12.74175 -12.69307 -12.58260 -12.21350 -12.19505 -12.13366 -11.96140 -11.76855 -11.62446 -11.43102 -11.36563 -11.19733 -10.63284 -10.59940 -9.93552 -9.75984 -8.21394 -6.33040 -0.32529 1.36575 1.38995 1.49534 2.05092 2.38423 2.56872 3.09199 3.38677 3.63679 3.85682 3.87547 3.96657 4.06571 4.11790 4.18998 4.33599 4.45188 4.48579 4.53172 4.60105 4.67854 4.71629 4.79377 4.85336 4.89147 4.95736 4.99115 5.02122 5.02473 5.13604 5.15750 5.16660 5.25694 5.31772 5.33733 5.41906 5.44920 5.48403 5.51193 5.53306 5.67228 5.71173 5.82398 6.03509 6.11594 6.74659 7.35587 8.85979 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.004535 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.634416 B = 6172.506324 C = 6455.233298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.998 5.998 4 C 0.278 3.722 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.277 1.277 13 S 2.781 3.219 14 O -1.014 7.014 15 O -1.006 7.006 16 N -0.987 5.987 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.106 4.106 20 H 0.108 0.892 21 C -0.148 4.148 22 C -0.108 4.108 23 C -0.092 4.092 24 H 0.089 0.911 25 C -0.155 4.155 26 C 0.113 3.887 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.037 0.963 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.334 0.271 15.924 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.839 5.839 4 C 0.154 3.846 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.202 1.202 13 S 2.792 3.208 14 O -0.998 6.998 15 O -0.990 6.990 16 N -0.827 5.827 17 C -0.017 4.017 18 C -0.174 4.174 19 C -0.123 4.123 20 H 0.126 0.874 21 C -0.205 4.205 22 C -0.146 4.146 23 C -0.112 4.112 24 H 0.107 0.893 25 C -0.212 4.212 26 C -0.011 4.011 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.519 0.375 16.178 20.459 hybrid contribution 1.197 -0.018 -1.071 1.606 sum -11.322 0.357 15.107 18.882 Atomic orbital electron populations 1.22231 0.94189 1.03424 1.02348 1.21380 0.95707 0.81529 1.03198 1.57699 1.81605 1.22629 1.21952 1.18510 0.95601 0.90162 0.80317 1.21822 1.03391 1.27658 1.06105 0.93496 1.25697 1.00759 0.94657 0.97352 1.69997 1.37678 1.30858 1.17598 0.85630 0.79769 0.78392 0.78388 1.18918 1.20152 1.20218 1.01741 0.74088 0.72464 0.72552 1.93530 1.62346 1.59100 1.84848 1.93478 1.84111 1.58286 1.63106 1.57362 1.42446 1.21687 1.61244 1.21761 0.95651 0.95363 0.88932 1.21398 1.01226 0.98336 0.96409 1.20340 1.03021 0.93765 0.95203 0.87427 1.21962 1.00747 1.02357 0.95433 1.21163 0.98018 0.99075 0.96323 1.21162 0.97156 0.99218 0.93693 0.89288 1.22295 0.93340 1.03164 1.02356 1.21908 1.01426 0.79849 0.97949 0.91644 0.93048 0.89280 0.91031 0.89964 0.95446 0.96828 0.92343 0.90463 0.86615 0.94449 0.88615 0.91756 0.91713 0.94515 0.95310 0.90496 0.90798 0.90296 0.92362 0.90846 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.56 16 2 C 0.11 3.75 6.40 86.38 0.55 4.30 16 3 N -1.00 -42.72 2.83 -519.84 -1.47 -44.19 16 4 C 0.28 14.39 5.10 85.63 0.44 14.83 16 5 C -0.55 -32.02 9.38 25.60 0.24 -31.78 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.02 0.87 5.46 84.65 0.46 1.33 16 8 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 9 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 S 2.78 116.24 5.94 -56.49 -0.34 115.90 16 14 O -1.01 -52.01 15.48 -128.00 -1.98 -53.99 16 15 O -1.01 -42.79 14.93 -128.00 -1.91 -44.70 16 16 N -0.99 -30.15 2.59 -512.37 -1.33 -31.48 16 17 C 0.11 2.47 4.64 87.37 0.41 2.87 16 18 C -0.13 -2.92 4.85 29.40 0.14 -2.78 16 19 C -0.11 -1.93 2.00 -12.77 -0.03 -1.95 16 20 H 0.11 1.50 4.65 -2.38 -0.01 1.48 16 21 C -0.15 -2.40 8.88 71.98 0.64 -1.76 16 22 C -0.11 -2.39 4.81 29.76 0.14 -2.24 16 23 C -0.09 -1.93 3.13 -11.16 -0.03 -1.97 16 24 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 25 C -0.16 -2.30 7.49 71.98 0.54 -1.77 16 26 C 0.11 3.27 5.73 86.49 0.50 3.76 16 27 H 0.06 1.50 5.83 -2.39 -0.01 1.49 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 2.63 8.11 -2.38 -0.02 2.61 16 31 H 0.08 2.73 6.91 -2.39 -0.02 2.71 16 32 H 0.03 1.44 8.11 -2.38 -0.02 1.42 16 33 H 0.01 0.76 7.61 -2.39 -0.02 0.74 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.08 1.76 6.03 -2.38 -0.01 1.75 16 36 H 0.12 1.94 5.21 -2.39 -0.01 1.93 16 37 H 0.04 1.06 7.48 -2.39 -0.02 1.04 16 38 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 39 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 40 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.03 0.83 7.48 -2.39 -0.02 0.81 16 43 H 0.08 1.45 7.80 -2.39 -0.02 1.43 16 44 H 0.07 0.86 7.89 -2.39 -0.02 0.85 16 45 H 0.08 1.09 3.16 -2.39 -0.01 1.08 16 46 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 47 H 0.07 1.95 7.98 -2.39 -0.02 1.94 16 48 H 0.06 2.18 6.66 -2.39 -0.02 2.16 16 Total: -1.00 -72.57 365.98 0.95 -71.62 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.93 Total: 14.26 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.73 Total: -20.72 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -2.51 Total: -129.85 kcal Atomic # 8 Polarization: -94.80 SS G_CDS: -3.89 Total: -98.69 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 116.24 SS G_CDS: -0.34 Total: 115.90 kcal Total: -72.57 0.95 -71.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.604 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds