Wall clock time and date at job start Tue Mar 31 2020 12:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46946 * 2 1 4 4 C 1.46496 * 120.00170 * 83.11745 * 3 2 1 5 5 C 1.50706 * 109.47186 * 84.99680 * 4 3 2 6 6 H 1.08001 * 119.99771 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99918 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00272 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99939 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46869 * 60.00061 * 9 7 5 11 11 H 1.48502 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46875 * 300.00220 * 9 7 5 13 13 S 1.65600 * 119.99719 * 263.11499 * 3 2 1 14 14 O 1.42098 * 106.40269 * 208.50148 * 13 3 2 15 15 O 1.42101 * 106.40653 * 341.42261 * 13 3 2 16 16 N 1.65594 * 107.21800 * 94.96357 * 13 3 2 17 17 C 1.44581 * 118.64697 * 264.03201 * 16 13 3 18 18 C 1.54863 * 109.60178 * 270.70566 * 17 16 13 19 19 C 1.47089 * 110.32309 * 288.73367 * 18 17 16 20 20 H 1.09000 * 108.51156 * 301.54283 * 19 18 17 21 21 C 1.53000 * 108.51448 * 184.05733 * 19 18 17 22 22 C 1.52562 * 114.33004 * 62.79700 * 19 18 17 23 23 C 1.50885 * 109.36293 * 274.99122 * 22 19 18 24 24 H 1.08989 * 109.36951 * 212.07853 * 23 22 19 25 25 C 1.53006 * 109.36293 * 331.82423 * 23 22 19 26 26 C 1.47612 * 118.64471 * 83.76436 * 16 13 3 27 27 H 1.09001 * 109.46727 * 294.95754 * 1 2 3 28 28 H 1.08994 * 109.46947 * 54.95895 * 1 2 3 29 29 H 1.09003 * 109.46995 * 174.96121 * 1 2 3 30 30 H 1.09000 * 109.47021 * 119.99799 * 2 1 3 31 31 H 1.09000 * 109.47039 * 239.99666 * 2 1 3 32 32 H 1.08996 * 109.47174 * 204.99523 * 4 3 2 33 33 H 1.09000 * 109.47144 * 325.00134 * 4 3 2 34 34 H 0.97001 * 119.99730 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.44715 * 30.74237 * 17 16 13 36 36 H 1.08998 * 109.45352 * 150.68714 * 17 16 13 37 37 H 1.09004 * 109.32830 * 48.99073 * 18 17 16 38 38 H 1.08999 * 109.33177 * 168.46682 * 18 17 16 39 39 H 1.08998 * 109.47343 * 59.98992 * 21 19 18 40 40 H 1.08992 * 109.47465 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.46858 * 299.99504 * 21 19 18 42 42 H 1.09005 * 109.49139 * 34.95514 * 22 19 18 43 43 H 1.08998 * 109.48945 * 155.00465 * 22 19 18 44 44 H 1.09002 * 109.47305 * 60.57904 * 25 23 22 45 45 H 1.09001 * 109.46632 * 180.58402 * 25 23 22 46 46 H 1.08997 * 109.46719 * 300.57913 * 25 23 22 47 47 H 1.09004 * 108.94252 * 258.57770 * 26 16 13 48 48 H 1.09000 * 108.94596 * 17.20509 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1191 2.1225 1.2595 5 6 3.4358 1.8096 1.9226 6 1 4.1284 1.1272 1.4525 7 6 3.7566 2.3954 3.1287 8 7 2.9134 3.2269 3.7009 9 14 5.3890 2.0082 3.9503 10 1 6.5022 2.4054 3.0511 11 1 5.4917 2.7605 5.2265 12 1 5.4711 0.5513 4.2258 13 16 2.4563 2.1045 -1.4238 14 8 3.4494 3.0666 -1.0963 15 8 2.6690 1.0552 -2.3582 16 7 1.1428 2.9545 -1.9663 17 6 0.2679 2.3341 -2.9358 18 6 0.7696 2.6511 -4.3662 19 6 0.5308 4.0660 -4.6894 20 1 -0.5370 4.2659 -4.6008 21 6 0.9466 4.3095 -6.1416 22 6 1.2832 5.0499 -3.7986 23 6 0.4849 5.2990 -2.5427 24 1 0.6562 6.3201 -2.2021 25 6 -1.0034 5.1066 -2.8411 26 6 0.9101 4.3121 -1.4355 27 1 -0.3633 0.4336 0.9317 28 1 -0.3633 0.5900 -0.8414 29 1 -0.3633 -1.0237 -0.0903 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.0591 3.1919 1.0575 33 1 1.3018 1.8309 1.9192 34 1 3.1390 3.6387 4.5497 35 1 0.2645 1.2548 -2.7833 36 1 -0.7435 2.7212 -2.8122 37 1 1.8376 2.4421 -4.4285 38 1 0.2393 2.0230 -5.0820 39 1 0.3561 3.6727 -6.8002 40 1 0.7755 5.3549 -6.3981 41 1 2.0042 4.0742 -6.2610 42 1 2.2549 4.6321 -3.5349 43 1 1.4241 5.9896 -4.3327 44 1 -1.1775 4.0841 -3.1764 45 1 -1.5826 5.2963 -1.9374 46 1 -1.3102 5.8023 -3.6221 47 1 0.1279 4.2665 -0.6777 48 1 1.8284 4.6734 -0.9727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336910004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:56 Heat of formation + Delta-G solvation = -76.956735 kcal Electronic energy + Delta-G solvation = -27813.145949 eV Core-core repulsion = 24222.907175 eV Total energy + Delta-G solvation = -3590.238774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.74656 -36.68858 -36.00328 -35.09805 -34.55104 -33.47528 -32.64495 -29.96531 -29.09582 -26.78996 -26.57539 -25.66113 -23.35469 -23.09519 -21.66898 -21.11005 -18.77300 -18.15594 -17.33489 -16.75139 -16.41992 -16.22259 -15.31351 -15.03644 -14.43238 -14.35593 -14.23264 -13.88308 -13.41528 -13.39333 -13.21508 -13.05846 -12.84767 -12.55318 -12.11915 -12.03793 -11.90842 -11.77132 -11.70122 -11.61870 -11.48808 -11.32786 -11.20128 -10.97842 -10.89104 -10.88144 -10.58502 -10.47461 -10.41072 -10.38206 -10.20799 -9.95988 -9.79293 -9.71535 -8.71688 -8.41650 -8.02658 -6.04714 -4.08141 1.26704 3.34943 3.38247 3.43184 3.52694 4.09989 4.46289 4.64381 4.72515 4.79662 4.91227 5.04405 5.11181 5.17079 5.25728 5.30595 5.42852 5.51539 5.55470 5.63299 5.63638 5.66990 5.73211 5.76522 5.77847 5.85591 5.90067 5.93148 6.02215 6.06141 6.09418 6.18437 6.28035 6.30497 6.36411 6.36584 6.43411 6.53519 6.62454 6.66061 6.98815 7.25948 7.44611 7.66093 7.93368 8.23151 8.93883 9.56876 11.03734 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.004646 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.546311 B = 6025.048678 C = 6373.070062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.992 5.992 4 C 0.260 3.740 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 S 2.773 3.227 14 O -0.965 6.965 15 O -0.996 6.996 16 N -1.000 6.000 17 C 0.120 3.880 18 C -0.133 4.133 19 C -0.106 4.106 20 H 0.084 0.916 21 C -0.150 4.150 22 C -0.105 4.105 23 C -0.097 4.097 24 H 0.080 0.920 25 C -0.161 4.161 26 C 0.119 3.881 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 1.194 -14.565 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.834 5.834 4 C 0.138 3.862 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.783 3.217 14 O -0.949 6.949 15 O -0.981 6.981 16 N -0.838 5.838 17 C -0.006 4.006 18 C -0.173 4.173 19 C -0.124 4.124 20 H 0.102 0.898 21 C -0.207 4.207 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.098 0.902 25 C -0.217 4.217 26 C -0.006 4.006 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.609 1.275 -14.817 17.706 hybrid contribution 0.524 -0.071 0.787 0.948 sum -9.085 1.205 -14.030 16.758 Atomic orbital electron populations 1.22241 0.97261 1.01132 1.02144 1.21129 0.93147 0.83317 1.03343 1.57785 1.80841 1.21233 1.23517 1.18982 0.97435 0.90591 0.79216 1.21458 1.02856 1.27144 1.05133 0.92317 1.24908 0.97160 0.94850 0.96999 1.69908 1.35860 1.29817 1.18027 0.86604 0.84200 0.78387 0.78551 1.20009 1.21186 1.20199 1.02236 0.73675 0.73054 0.72741 1.93609 1.55231 1.61949 1.84076 1.93504 1.85064 1.56957 1.62535 1.57755 1.46467 1.25268 1.54320 1.21328 0.94676 0.97227 0.87405 1.21338 1.02684 0.96219 0.97029 1.20318 1.01917 0.95325 0.94821 0.89825 1.21987 1.01428 1.01012 0.96270 1.21122 0.99420 0.98597 0.95155 1.21204 0.95592 0.99137 0.95742 0.90166 1.22353 0.95634 1.02523 1.01222 1.21844 1.02881 0.80813 0.95046 0.92045 0.93312 0.92371 0.89940 0.90608 0.94863 0.94781 0.92698 0.90577 0.89906 0.91529 0.91117 0.93060 0.93016 0.92931 0.91674 0.92021 0.90704 0.92878 0.92811 0.91696 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.22 37.16 0.38 -2.02 16 2 C 0.12 2.06 6.39 -4.04 -0.03 2.04 16 3 N -0.99 -20.62 2.83 -115.67 -0.33 -20.95 16 4 C 0.26 6.43 5.09 -5.19 -0.03 6.40 16 5 C -0.53 -14.78 9.38 -34.44 -0.32 -15.10 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 S 2.77 55.88 5.92 -107.50 -0.64 55.24 16 14 O -0.97 -23.33 15.83 -57.17 -0.90 -24.24 16 15 O -1.00 -20.58 14.91 -57.17 -0.85 -21.44 16 16 N -1.00 -15.42 2.58 -113.09 -0.29 -15.71 16 17 C 0.12 1.51 4.95 -4.08 -0.02 1.49 16 18 C -0.13 -1.58 4.88 -28.59 -0.14 -1.72 16 19 C -0.11 -1.11 1.99 -93.68 -0.19 -1.30 16 20 H 0.08 0.78 4.66 -51.93 -0.24 0.54 16 21 C -0.15 -1.41 8.92 37.16 0.33 -1.08 16 22 C -0.11 -1.24 4.81 -28.02 -0.13 -1.38 16 23 C -0.10 -1.11 3.15 -91.00 -0.29 -1.40 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.16 -1.52 7.48 37.16 0.28 -1.24 16 26 C 0.12 1.74 5.74 -2.75 -0.02 1.72 16 27 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.05 0.64 7.02 -51.93 -0.36 0.27 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 31 H 0.08 1.28 6.84 -51.93 -0.36 0.92 16 32 H 0.03 0.87 7.75 -51.93 -0.40 0.46 16 33 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.08 0.96 6.62 -51.93 -0.34 0.62 16 36 H 0.08 0.86 5.21 -51.93 -0.27 0.59 16 37 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 38 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.44 7.96 -51.93 -0.41 0.03 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.93 7.49 -51.93 -0.39 0.55 16 43 H 0.06 0.65 7.73 -51.93 -0.40 0.25 16 44 H 0.07 0.69 3.14 -51.93 -0.16 0.53 16 45 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 46 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 47 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 48 H 0.09 1.59 6.79 -51.93 -0.35 1.23 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -32.14 368.73 -10.27 -42.41 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.26 Total: -0.61 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.27 Total: -11.92 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.12 Total: -61.88 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.76 Total: -45.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 55.88 SS G_CDS: -0.64 Total: 55.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.14 -10.27 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.548 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds