Wall clock time and date at job start Tue Mar 31 2020 12:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 C 1.46506 * 119.99847 * 274.83946 * 3 2 1 5 5 C 1.50702 * 109.46805 * 274.99637 * 4 3 2 6 6 H 1.07998 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00183 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46861 * 60.00324 * 9 7 5 11 11 H 1.48495 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46958 * 300.00304 * 9 7 5 13 13 S 1.65599 * 120.00078 * 94.83518 * 3 2 1 14 14 O 1.42100 * 106.40176 * 340.57223 * 13 3 2 15 15 O 1.42102 * 106.39865 * 207.65216 * 13 3 2 16 16 N 1.65594 * 107.21626 * 94.11184 * 13 3 2 17 17 C 1.44572 * 118.64856 * 266.84861 * 16 13 3 18 18 C 1.54862 * 109.60574 * 270.72943 * 17 16 13 19 19 C 1.47095 * 110.31995 * 288.73139 * 18 17 16 20 20 H 1.08998 * 108.51191 * 301.54481 * 19 18 17 21 21 C 1.53000 * 108.38745 * 183.96474 * 19 18 17 22 22 C 1.52572 * 114.32624 * 62.79987 * 19 18 17 23 23 C 1.50882 * 109.35936 * 274.98456 * 22 19 18 24 24 H 1.09001 * 109.36197 * 331.69960 * 23 22 19 25 25 C 1.52990 * 109.36565 * 212.07635 * 23 22 19 26 26 C 1.47612 * 118.64159 * 86.83198 * 16 13 3 27 27 H 1.08997 * 109.47123 * 295.60659 * 1 2 3 28 28 H 1.09002 * 109.47317 * 55.61074 * 1 2 3 29 29 H 1.08997 * 109.47398 * 175.60455 * 1 2 3 30 30 H 1.09001 * 109.47136 * 239.99854 * 2 1 3 31 31 H 1.09001 * 109.47275 * 120.00082 * 2 1 3 32 32 H 1.09001 * 109.47262 * 34.99801 * 4 3 2 33 33 H 1.08992 * 109.47319 * 154.99982 * 4 3 2 34 34 H 0.96999 * 120.00121 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45110 * 150.68265 * 17 16 13 36 36 H 1.09012 * 109.44722 * 30.76942 * 17 16 13 37 37 H 1.08997 * 109.32891 * 168.46817 * 18 17 16 38 38 H 1.09010 * 109.32428 * 48.98964 * 18 17 16 39 39 H 1.08998 * 109.47089 * 295.30783 * 21 19 18 40 40 H 1.08994 * 109.47037 * 55.31317 * 21 19 18 41 41 H 1.08999 * 109.46826 * 175.31079 * 21 19 18 42 42 H 1.09001 * 109.48784 * 34.95175 * 22 19 18 43 43 H 1.09003 * 109.48841 * 155.01617 * 22 19 18 44 44 H 1.09006 * 109.47122 * 60.00388 * 25 23 22 45 45 H 1.08997 * 109.46844 * 180.02562 * 25 23 22 46 46 H 1.09003 * 109.47678 * 300.00039 * 25 23 22 47 47 H 1.09002 * 108.94674 * 258.55336 * 26 16 13 48 48 H 1.09000 * 108.94972 * 17.18030 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1616 2.1075 -1.2643 5 6 3.4998 1.7870 -1.8788 6 1 4.1758 1.1098 -1.3779 7 6 3.8608 2.3576 -3.0809 8 7 3.0375 3.1819 -3.6911 9 14 5.5193 1.9598 -3.8430 10 1 5.6096 0.4996 -4.0975 11 1 5.6646 2.6961 -5.1244 12 1 6.6022 2.3680 -2.9125 13 16 2.4083 2.1216 1.4290 14 8 1.7568 1.3839 2.4540 15 8 2.2091 3.5140 1.2269 16 7 4.0341 1.9109 1.6625 17 6 4.4814 0.7785 2.4420 18 6 4.5550 1.1737 3.9376 19 6 5.6811 2.0914 4.1685 20 1 6.6003 1.5977 3.8531 21 6 5.7737 2.3737 5.6694 22 6 5.5686 3.4224 3.4312 23 6 6.1061 3.2651 2.0302 24 1 6.8636 2.4813 2.0196 25 6 6.7372 4.5833 1.5779 26 6 4.9670 2.8869 1.0657 27 1 -0.3633 0.4441 0.9267 28 1 -0.3634 0.5804 -0.8481 29 1 -0.3634 -1.0246 -0.0788 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3669 1.8079 -1.9475 33 1 2.0951 3.1792 -1.0772 34 1 3.2916 3.5836 -4.5366 35 1 5.4688 0.4691 2.0993 36 1 3.7799 -0.0468 2.3188 37 1 4.6910 0.2766 4.5415 38 1 3.6252 1.6633 4.2275 39 1 4.8792 2.9048 5.9950 40 1 5.8547 1.4319 6.2119 41 1 6.6530 2.9857 5.8704 42 1 4.5229 3.7266 3.3876 43 1 6.1466 4.1808 3.9595 44 1 7.5515 4.8468 2.2530 45 1 7.1257 4.4717 0.5657 46 1 5.9838 5.3709 1.5927 47 1 5.3970 2.4577 0.1607 48 1 4.4143 3.7880 0.8000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336910005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:59 Heat of formation + Delta-G solvation = -98.479369 kcal Electronic energy + Delta-G solvation = -27886.516952 eV Core-core repulsion = 24295.344886 eV Total energy + Delta-G solvation = -3591.172066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.11604 -36.71917 -35.99012 -35.15143 -34.44159 -33.88289 -32.70942 -29.92868 -28.66517 -26.62770 -26.57771 -25.43280 -23.14546 -23.06058 -21.64001 -20.23307 -19.73697 -18.16235 -17.03265 -16.83518 -16.35627 -16.12745 -15.28044 -15.01160 -14.58151 -14.23585 -13.99405 -13.88634 -13.29560 -13.03698 -12.94155 -12.87943 -12.71694 -12.34004 -12.15167 -12.05760 -11.90750 -11.71965 -11.65540 -11.60921 -11.59110 -11.32353 -11.21779 -11.04244 -10.97401 -10.78807 -10.47481 -10.42694 -10.38933 -10.36436 -10.25818 -10.12696 -9.96847 -9.75565 -8.54164 -8.47046 -8.01678 -6.11147 -4.17600 1.32863 3.24140 3.30695 3.30907 3.53993 4.12700 4.35365 4.68903 4.80941 4.90037 4.98053 5.21659 5.21736 5.24231 5.31479 5.41026 5.45647 5.61000 5.70232 5.72093 5.75246 5.78305 5.84519 5.85655 5.89035 5.97340 6.01136 6.05278 6.12695 6.20076 6.23481 6.31599 6.33379 6.38369 6.42922 6.56232 6.59062 6.65817 6.68283 6.72927 7.12407 7.37364 7.47509 7.68179 7.86462 8.16139 8.87280 9.48069 10.96747 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.006589 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.362000 B = 4248.488756 C = 5730.298837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.993 5.993 4 C 0.246 3.754 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.780 3.220 14 O -0.997 6.997 15 O -0.982 6.982 16 N -0.994 5.994 17 C 0.131 3.869 18 C -0.135 4.135 19 C -0.088 4.088 20 H 0.065 0.935 21 C -0.149 4.149 22 C -0.106 4.106 23 C -0.098 4.098 24 H 0.070 0.930 25 C -0.146 4.146 26 C 0.124 3.876 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -3.762 12.603 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.124 3.876 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.200 1.200 13 S 2.790 3.210 14 O -0.982 6.982 15 O -0.966 6.966 16 N -0.832 5.832 17 C 0.004 3.996 18 C -0.174 4.174 19 C -0.107 4.107 20 H 0.083 0.917 21 C -0.207 4.207 22 C -0.143 4.143 23 C -0.118 4.118 24 H 0.088 0.912 25 C -0.204 4.204 26 C -0.001 4.001 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.648 -3.182 12.988 14.157 hybrid contribution 1.216 -0.458 -0.899 1.580 sum 5.864 -3.640 12.089 13.921 Atomic orbital electron populations 1.22212 0.97040 1.01441 1.02267 1.20973 0.93577 0.83039 1.02053 1.57782 1.78576 1.22842 1.24238 1.19164 0.97267 0.92101 0.79115 1.21510 1.02119 1.28007 1.06001 0.91949 1.24940 0.97118 0.94886 0.96851 1.69924 1.35978 1.29833 1.17023 0.86673 0.84289 0.78444 0.78678 1.20313 1.21257 1.20049 1.01918 0.72836 0.73385 0.72858 1.93522 1.73763 1.73998 1.56870 1.93550 1.84817 1.31882 1.86351 1.57496 1.25853 1.35135 1.64707 1.21070 1.01168 0.87537 0.89785 1.21373 0.99322 0.99619 0.97094 1.20052 0.99100 0.96235 0.95276 0.91683 1.21984 1.01477 1.01190 0.96022 1.21220 1.01777 0.96461 0.94869 1.21285 0.97360 0.98024 0.95160 0.91151 1.21850 1.00404 0.96835 1.01340 1.21797 0.91191 0.92179 0.94938 0.92795 0.92042 0.92327 0.90312 0.91905 0.94528 0.93402 0.92565 0.90732 0.90924 0.91171 0.91410 0.92833 0.93008 0.93017 0.91850 0.91934 0.92767 0.92289 0.92229 0.90694 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.13 2.29 6.08 -4.04 -0.02 2.26 16 3 N -0.99 -20.59 2.82 -115.66 -0.33 -20.91 16 4 C 0.25 6.04 5.44 -5.19 -0.03 6.01 16 5 C -0.54 -13.64 9.23 -34.44 -0.32 -13.96 16 6 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 S 2.78 56.16 5.95 -107.50 -0.64 55.52 16 14 O -1.00 -20.21 15.24 -57.17 -0.87 -21.08 16 15 O -0.98 -22.98 15.23 -57.17 -0.87 -23.86 16 16 N -0.99 -16.94 2.59 -113.28 -0.29 -17.24 16 17 C 0.13 1.84 5.24 -4.09 -0.02 1.82 16 18 C -0.13 -1.71 4.86 -28.58 -0.14 -1.85 16 19 C -0.09 -1.02 2.16 -93.67 -0.20 -1.22 16 20 H 0.06 0.70 7.36 -51.93 -0.38 0.32 16 21 C -0.15 -1.50 8.88 37.16 0.33 -1.17 16 22 C -0.11 -1.36 4.45 -28.01 -0.12 -1.49 16 23 C -0.10 -1.33 2.54 -91.18 -0.23 -1.56 16 24 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 25 C -0.15 -1.83 8.88 37.15 0.33 -1.50 16 26 C 0.12 2.11 5.65 -2.92 -0.02 2.09 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.30 6.97 -51.93 -0.36 0.94 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.07 1.00 7.59 -51.92 -0.39 0.60 16 37 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.07 0.99 7.62 -51.92 -0.40 0.60 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.47 8.07 -51.93 -0.42 0.05 16 41 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.06 0.95 7.48 -51.93 -0.39 0.56 16 43 H 0.06 0.71 7.40 -51.93 -0.38 0.33 16 44 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 47 H 0.07 1.36 7.92 -51.93 -0.41 0.95 16 48 H 0.09 1.77 6.55 -51.93 -0.34 1.43 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -29.75 380.18 -10.56 -40.31 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.84 Total: 1.85 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.16 Total: -11.30 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.12 Total: -62.40 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.74 Total: -44.94 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.64 Total: 55.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.75 -10.56 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.172 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds