Wall clock time and date at job start Tue Mar 31 2020 12:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 C 1.46506 * 119.99847 * 274.83946 * 3 2 1 5 5 C 1.50702 * 109.46805 * 274.99637 * 4 3 2 6 6 H 1.07998 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00183 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46861 * 60.00324 * 9 7 5 11 11 H 1.48495 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46958 * 300.00304 * 9 7 5 13 13 S 1.65599 * 120.00078 * 94.83518 * 3 2 1 14 14 O 1.42100 * 106.40176 * 340.57223 * 13 3 2 15 15 O 1.42102 * 106.39865 * 207.65216 * 13 3 2 16 16 N 1.65594 * 107.21626 * 94.11184 * 13 3 2 17 17 C 1.44572 * 118.64856 * 266.84861 * 16 13 3 18 18 C 1.54862 * 109.60574 * 270.72943 * 17 16 13 19 19 C 1.47095 * 110.31995 * 288.73139 * 18 17 16 20 20 H 1.08998 * 108.51191 * 301.54481 * 19 18 17 21 21 C 1.53000 * 108.38745 * 183.96474 * 19 18 17 22 22 C 1.52572 * 114.32624 * 62.79987 * 19 18 17 23 23 C 1.50882 * 109.35936 * 274.98456 * 22 19 18 24 24 H 1.09001 * 109.36197 * 331.69960 * 23 22 19 25 25 C 1.52990 * 109.36565 * 212.07635 * 23 22 19 26 26 C 1.47612 * 118.64159 * 86.83198 * 16 13 3 27 27 H 1.08997 * 109.47123 * 295.60659 * 1 2 3 28 28 H 1.09002 * 109.47317 * 55.61074 * 1 2 3 29 29 H 1.08997 * 109.47398 * 175.60455 * 1 2 3 30 30 H 1.09001 * 109.47136 * 239.99854 * 2 1 3 31 31 H 1.09001 * 109.47275 * 120.00082 * 2 1 3 32 32 H 1.09001 * 109.47262 * 34.99801 * 4 3 2 33 33 H 1.08992 * 109.47319 * 154.99982 * 4 3 2 34 34 H 0.96999 * 120.00121 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45110 * 150.68265 * 17 16 13 36 36 H 1.09012 * 109.44722 * 30.76942 * 17 16 13 37 37 H 1.08997 * 109.32891 * 168.46817 * 18 17 16 38 38 H 1.09010 * 109.32428 * 48.98964 * 18 17 16 39 39 H 1.08998 * 109.47089 * 295.30783 * 21 19 18 40 40 H 1.08994 * 109.47037 * 55.31317 * 21 19 18 41 41 H 1.08999 * 109.46826 * 175.31079 * 21 19 18 42 42 H 1.09001 * 109.48784 * 34.95175 * 22 19 18 43 43 H 1.09003 * 109.48841 * 155.01617 * 22 19 18 44 44 H 1.09006 * 109.47122 * 60.00388 * 25 23 22 45 45 H 1.08997 * 109.46844 * 180.02562 * 25 23 22 46 46 H 1.09003 * 109.47678 * 300.00039 * 25 23 22 47 47 H 1.09002 * 108.94674 * 258.55336 * 26 16 13 48 48 H 1.09000 * 108.94972 * 17.18030 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1616 2.1075 -1.2643 5 6 3.4998 1.7870 -1.8788 6 1 4.1758 1.1098 -1.3779 7 6 3.8608 2.3576 -3.0809 8 7 3.0375 3.1819 -3.6911 9 14 5.5193 1.9598 -3.8430 10 1 5.6096 0.4996 -4.0975 11 1 5.6646 2.6961 -5.1244 12 1 6.6022 2.3680 -2.9125 13 16 2.4083 2.1216 1.4290 14 8 1.7568 1.3839 2.4540 15 8 2.2091 3.5140 1.2269 16 7 4.0341 1.9109 1.6625 17 6 4.4814 0.7785 2.4420 18 6 4.5550 1.1737 3.9376 19 6 5.6811 2.0914 4.1685 20 1 6.6003 1.5977 3.8531 21 6 5.7737 2.3737 5.6694 22 6 5.5686 3.4224 3.4312 23 6 6.1061 3.2651 2.0302 24 1 6.8636 2.4813 2.0196 25 6 6.7372 4.5833 1.5779 26 6 4.9670 2.8869 1.0657 27 1 -0.3633 0.4441 0.9267 28 1 -0.3634 0.5804 -0.8481 29 1 -0.3634 -1.0246 -0.0788 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3669 1.8079 -1.9475 33 1 2.0951 3.1792 -1.0772 34 1 3.2916 3.5836 -4.5366 35 1 5.4688 0.4691 2.0993 36 1 3.7799 -0.0468 2.3188 37 1 4.6910 0.2766 4.5415 38 1 3.6252 1.6633 4.2275 39 1 4.8792 2.9048 5.9950 40 1 5.8547 1.4319 6.2119 41 1 6.6530 2.9857 5.8704 42 1 4.5229 3.7266 3.3876 43 1 6.1466 4.1808 3.9595 44 1 7.5515 4.8468 2.2530 45 1 7.1257 4.4717 0.5657 46 1 5.9838 5.3709 1.5927 47 1 5.3970 2.4577 0.1607 48 1 4.4143 3.7880 0.8000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336910005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:57 Heat of formation + Delta-G solvation = -116.072185 kcal Electronic energy + Delta-G solvation = -27887.279834 eV Core-core repulsion = 24295.344886 eV Total energy + Delta-G solvation = -3591.934947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.21327 -38.40305 -37.67024 -36.86658 -35.57636 -35.00543 -34.67108 -31.54554 -29.72124 -28.49677 -27.52325 -26.68886 -24.92774 -24.19638 -23.24112 -21.24492 -20.89692 -19.68790 -18.69570 -18.43321 -18.20570 -17.55066 -16.82303 -16.29284 -16.10999 -15.53697 -15.35277 -15.08031 -14.79203 -14.59557 -14.19361 -13.98493 -13.79523 -13.78902 -13.66215 -13.47023 -13.34944 -13.23603 -13.15647 -13.04916 -12.76694 -12.70142 -12.67850 -12.59528 -12.42584 -12.23530 -12.13719 -12.00795 -11.77259 -11.61854 -11.39289 -11.33456 -11.29151 -11.12267 -10.55474 -9.89173 -9.71143 -8.14260 -6.27995 -0.28236 1.44932 1.46015 1.53675 2.00172 2.43958 2.54890 3.17305 3.38376 3.62123 3.85076 3.88694 3.96607 4.07535 4.17280 4.23201 4.35714 4.41242 4.47982 4.60046 4.67826 4.69188 4.72781 4.78126 4.85322 4.93038 4.93905 4.97317 4.99824 5.04971 5.12035 5.17071 5.17836 5.24742 5.31561 5.32851 5.38077 5.44275 5.48544 5.50669 5.55189 5.61289 5.76450 5.83325 6.05350 6.12713 6.83669 7.41963 8.93863 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.006589 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.362000 B = 4248.488756 C = 5730.298837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.999 5.999 4 C 0.262 3.738 5 C -0.534 4.534 6 H 0.073 0.927 7 C 0.013 3.987 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.261 1.261 13 S 2.786 3.214 14 O -0.999 6.999 15 O -1.022 7.022 16 N -0.987 5.987 17 C 0.119 3.881 18 C -0.132 4.132 19 C -0.089 4.089 20 H 0.084 0.916 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.091 4.091 24 H 0.093 0.907 25 C -0.146 4.146 26 C 0.124 3.876 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.063 0.937 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.935 -5.808 14.049 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.839 5.839 4 C 0.139 3.861 5 C -0.574 4.574 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.186 1.186 13 S 2.797 3.203 14 O -0.983 6.983 15 O -1.006 7.006 16 N -0.827 5.827 17 C -0.007 4.007 18 C -0.171 4.171 19 C -0.107 4.107 20 H 0.103 0.897 21 C -0.204 4.204 22 C -0.143 4.143 23 C -0.111 4.111 24 H 0.111 0.889 25 C -0.204 4.204 26 C -0.001 4.001 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.313 -5.258 14.463 17.038 hybrid contribution 0.327 0.161 -1.295 1.345 sum 7.641 -5.097 13.169 16.055 Atomic orbital electron populations 1.22203 0.96022 1.03337 1.01188 1.21260 0.94584 0.81379 1.03232 1.57726 1.79414 1.23991 1.22806 1.18687 0.96697 0.90481 0.80270 1.21738 1.02233 1.27535 1.05857 0.90914 1.25792 1.00721 0.94683 0.97478 1.70070 1.38122 1.31264 1.17513 0.85635 0.80086 0.78502 0.77677 1.19286 1.21605 1.18593 1.01551 0.73745 0.72412 0.72614 1.93506 1.74478 1.73712 1.56563 1.93494 1.85837 1.34516 1.86796 1.57260 1.24337 1.36177 1.64884 1.21444 1.02440 0.86386 0.90380 1.21386 0.98687 1.00830 0.96233 1.20056 0.99288 0.95141 0.96218 0.89739 1.21950 1.01543 1.02034 0.94837 1.21241 1.00108 0.98082 0.94912 1.21287 0.96199 0.99097 0.94480 0.88924 1.21870 1.00766 0.95938 1.01826 1.21795 0.91639 0.90756 0.95874 0.93492 0.93590 0.88843 0.90134 0.89578 0.96481 0.97041 0.92668 0.88272 0.90531 0.88553 0.93976 0.93951 0.91670 0.91765 0.94916 0.90123 0.90007 0.92740 0.93646 0.91886 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 10.24 71.98 0.74 -4.59 16 2 C 0.12 4.17 6.08 86.38 0.52 4.70 16 3 N -1.00 -42.32 2.82 -519.83 -1.47 -43.79 16 4 C 0.26 13.46 5.44 85.63 0.47 13.93 16 5 C -0.53 -27.53 9.23 25.60 0.24 -27.29 16 6 H 0.07 3.53 7.75 -2.91 -0.02 3.50 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 9 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 S 2.79 115.44 5.95 -56.49 -0.34 115.10 16 14 O -1.00 -40.52 15.24 -128.00 -1.95 -42.47 16 15 O -1.02 -50.73 15.23 -128.00 -1.95 -52.68 16 16 N -0.99 -33.32 2.59 -512.31 -1.33 -34.65 16 17 C 0.12 3.08 5.24 87.37 0.46 3.53 16 18 C -0.13 -3.04 4.86 29.39 0.14 -2.90 16 19 C -0.09 -1.78 2.16 -12.77 -0.03 -1.81 16 20 H 0.08 1.42 7.36 -2.39 -0.02 1.41 16 21 C -0.15 -2.48 8.88 71.98 0.64 -1.84 16 22 C -0.11 -2.55 4.45 29.76 0.13 -2.42 16 23 C -0.09 -2.29 2.54 -11.15 -0.03 -2.32 16 24 H 0.09 1.97 7.32 -2.39 -0.02 1.95 16 25 C -0.15 -3.45 8.88 71.98 0.64 -2.81 16 26 C 0.12 4.26 5.65 86.50 0.49 4.75 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 31 H 0.09 2.56 7.50 -2.39 -0.02 2.54 16 32 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.01 0.67 6.97 -2.39 -0.02 0.66 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 36 H 0.08 1.92 7.59 -2.38 -0.02 1.90 16 37 H 0.10 1.73 8.06 -2.39 -0.02 1.71 16 38 H 0.04 1.19 7.62 -2.38 -0.02 1.17 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 41 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 42 H 0.03 0.98 7.48 -2.39 -0.02 0.97 16 43 H 0.08 1.64 7.40 -2.39 -0.02 1.62 16 44 H 0.08 1.48 8.09 -2.38 -0.02 1.47 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 47 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 48 H 0.06 2.40 6.55 -2.39 -0.02 2.39 16 Total: -1.00 -66.47 380.18 1.05 -65.42 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.90 Total: 21.22 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.87 Total: -17.94 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -2.51 Total: -131.94 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -3.90 Total: -95.15 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 115.44 SS G_CDS: -0.34 Total: 115.10 kcal Total: -66.47 1.05 -65.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.648 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds