Wall clock time and date at job start Tue Mar 31 2020 12:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47220 * 2 1 4 4 C 1.46505 * 119.99591 * 274.99999 * 3 2 1 5 5 C 1.50694 * 109.47135 * 274.99646 * 4 3 2 6 6 H 1.08004 * 119.99832 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99778 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47508 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46957 * 120.00394 * 9 7 5 12 12 H 1.48502 * 109.47116 * 239.99655 * 9 7 5 13 13 S 1.65600 * 120.00403 * 94.99794 * 3 2 1 14 14 O 1.42099 * 106.40041 * 336.45921 * 13 3 2 15 15 O 1.42103 * 106.40382 * 203.54012 * 13 3 2 16 16 N 1.65599 * 107.21815 * 90.00046 * 13 3 2 17 17 C 1.46506 * 119.99791 * 89.99936 * 16 13 3 18 18 C 1.46501 * 120.00111 * 270.00257 * 16 13 3 19 19 C 1.53001 * 109.46892 * 264.99830 * 18 16 13 20 20 C 1.52994 * 109.47232 * 294.99923 * 19 18 16 21 21 C 1.53001 * 109.47232 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.46702 * 60.00249 * 21 20 19 23 23 C 1.53005 * 109.46821 * 299.99637 * 22 21 20 24 24 C 1.52997 * 109.46677 * 174.99950 * 19 18 16 25 25 H 1.09003 * 109.47182 * 300.00243 * 1 2 3 26 26 H 1.08997 * 109.47545 * 60.00397 * 1 2 3 27 27 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47324 * 239.99772 * 2 1 3 29 29 H 1.09001 * 109.47092 * 119.99816 * 2 1 3 30 30 H 1.08998 * 109.47285 * 35.00119 * 4 3 2 31 31 H 1.09005 * 109.46574 * 154.99935 * 4 3 2 32 32 H 0.97003 * 120.00103 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47060 * 90.00564 * 17 16 13 34 34 H 1.09004 * 109.47073 * 210.00053 * 17 16 13 35 35 H 1.09000 * 109.47212 * 330.00135 * 17 16 13 36 36 H 1.09001 * 109.47135 * 24.99777 * 18 16 13 37 37 H 1.09001 * 109.46893 * 145.00071 * 18 16 13 38 38 H 1.09003 * 109.47188 * 55.00260 * 19 18 16 39 39 H 1.09003 * 109.47309 * 300.00262 * 20 19 18 40 40 H 1.09007 * 109.47258 * 59.99826 * 20 19 18 41 41 H 1.08998 * 109.47222 * 299.99833 * 21 20 19 42 42 H 1.09004 * 109.47068 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.46430 * 180.02562 * 22 21 20 44 44 H 1.08993 * 109.47733 * 60.00270 * 22 21 20 45 45 H 1.08998 * 109.47179 * 300.00463 * 23 22 21 46 46 H 1.09002 * 109.46604 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.47486 * 299.99701 * 24 19 18 48 48 H 1.08993 * 109.47564 * 60.00389 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4947 1.7887 -1.8824 6 1 4.1720 1.1110 -1.3839 7 6 3.8529 2.3612 -3.0845 8 7 3.0284 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 6.2453 1.0163 -2.9766 11 1 5.3017 1.3474 -5.1861 12 1 6.2980 3.2135 -4.0006 13 16 2.4122 2.1202 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3057 3.5187 1.1997 16 7 4.0144 1.8138 1.7137 17 6 5.0372 2.7325 1.2077 18 6 4.4090 0.6239 2.4718 19 6 4.5942 0.9956 3.9444 20 6 5.7661 1.9696 4.0810 21 6 5.9509 2.3418 5.5535 22 6 6.2405 1.0784 6.3664 23 6 5.0684 0.1043 6.2297 24 6 4.8840 -0.2681 4.7567 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3617 1.8096 -1.9453 31 1 2.0921 3.1802 -1.0756 32 1 3.2802 3.5893 -4.5370 33 1 5.2387 3.4995 1.9556 34 1 5.9526 2.1784 0.9999 35 1 4.6815 3.2033 0.2912 36 1 3.6332 -0.1368 2.3839 37 1 5.3464 0.2344 2.0747 38 1 3.6848 1.4667 4.3173 39 1 6.6756 1.4985 3.7080 40 1 5.5597 2.8699 3.5021 41 1 5.0415 2.8132 5.9260 42 1 6.7862 3.0355 5.6508 43 1 6.3717 1.3435 7.4154 44 1 7.1499 0.6071 5.9939 45 1 4.1590 0.5757 6.6023 46 1 5.2745 -0.7956 6.8092 47 1 4.0490 -0.9621 4.6594 48 1 5.7933 -0.7392 4.3838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336912418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:09 Heat of formation + Delta-G solvation = -122.171050 kcal Electronic energy + Delta-G solvation = -27192.040503 eV Core-core repulsion = 23599.841089 eV Total energy + Delta-G solvation = -3592.199414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.86824 -38.33549 -37.66443 -36.88601 -36.76947 -34.67364 -32.31637 -31.54410 -31.45463 -28.55294 -28.14923 -25.26458 -24.90160 -23.40737 -23.23446 -22.23190 -20.56688 -19.80172 -18.69179 -18.47165 -18.14443 -17.43504 -16.62204 -16.53673 -15.94974 -15.42135 -15.16987 -15.02043 -14.85817 -14.73207 -14.62831 -14.45526 -13.99341 -13.80256 -13.60319 -13.45620 -13.31484 -13.15427 -13.04322 -13.02449 -12.75350 -12.70911 -12.65868 -12.46148 -12.38643 -12.23658 -12.10260 -11.93212 -11.80238 -11.64955 -11.57083 -11.32651 -11.14287 -10.80689 -10.57145 -9.90696 -9.68816 -8.14502 -6.28291 -0.28692 1.44394 1.46135 1.57360 2.00709 2.44485 2.57486 3.17411 3.39966 3.71483 3.84621 3.88513 3.94879 4.05562 4.32695 4.37709 4.41830 4.47753 4.50175 4.54983 4.61644 4.67780 4.69607 4.71426 4.74137 4.86481 4.90852 4.97498 5.03299 5.08565 5.11253 5.14200 5.24292 5.26901 5.31217 5.32404 5.35889 5.39441 5.45492 5.52859 5.55654 5.64316 5.73931 5.79413 6.02404 6.12878 6.84444 7.41979 8.94059 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.004743 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.129170 B = 5902.624618 C = 6872.273500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.998 5.998 4 C 0.261 3.739 5 C -0.535 4.535 6 H 0.074 0.926 7 C 0.010 3.990 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.792 3.208 14 O -0.999 6.999 15 O -1.020 7.020 16 N -0.999 5.999 17 C 0.096 3.904 18 C 0.126 3.874 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -8.873 15.943 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.839 5.839 4 C 0.137 3.863 5 C -0.574 4.574 6 H 0.092 0.908 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.179 1.179 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.801 3.199 14 O -0.983 6.983 15 O -1.004 7.004 16 N -0.839 5.839 17 C -0.049 4.049 18 C 0.001 3.999 19 C -0.126 4.126 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.510 -8.259 16.328 19.421 hybrid contribution 0.460 0.272 -1.185 1.300 sum 6.970 -7.986 15.143 18.485 Atomic orbital electron populations 1.22198 0.96019 1.03283 1.01206 1.21252 0.94589 0.81351 1.03183 1.57727 1.79311 1.24008 1.22812 1.18711 0.96714 0.90590 0.80266 1.21838 1.02358 1.27372 1.05863 0.90770 1.25832 1.00829 0.94681 0.97576 1.70086 1.38108 1.31286 1.17600 0.85466 0.79498 0.78141 0.78319 1.17902 1.20969 1.20892 1.01439 0.73495 0.72409 0.72556 1.93511 1.71369 1.76143 1.57315 1.93509 1.86781 1.33684 1.86457 1.57601 1.24143 1.34967 1.67202 1.21619 0.92145 0.92833 0.98323 1.21569 1.02517 0.85232 0.90600 1.21615 0.98643 0.97632 0.94725 1.21753 0.98030 0.99131 0.96822 1.21563 1.01169 0.98085 0.95139 1.21521 0.98461 0.95412 0.99862 1.21542 0.98433 0.99617 0.96095 1.21512 1.02335 0.95852 0.94992 0.93573 0.93519 0.88893 0.90107 0.89671 0.96420 0.96896 0.92668 0.91895 0.88926 0.92963 0.90502 0.88316 0.93281 0.90588 0.92350 0.93434 0.91350 0.91565 0.91163 0.93165 0.90671 0.91801 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 10.24 71.98 0.74 -4.51 16 2 C 0.12 4.12 6.06 86.38 0.52 4.65 16 3 N -1.00 -41.73 2.82 -519.87 -1.47 -43.20 16 4 C 0.26 13.31 5.43 85.63 0.47 13.77 16 5 C -0.54 -27.50 9.17 25.60 0.23 -27.27 16 6 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.01 0.53 5.46 84.66 0.46 0.99 16 8 N -0.93 -53.84 13.29 21.45 0.28 -53.55 16 9 Si 0.96 41.25 29.54 68.60 2.03 43.28 16 10 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 S 2.79 114.06 5.97 -56.49 -0.34 113.72 16 14 O -1.00 -40.40 16.08 -128.00 -2.06 -42.46 16 15 O -1.02 -50.19 15.76 -128.00 -2.02 -52.21 16 16 N -1.00 -32.65 3.15 -539.09 -1.70 -34.35 16 17 C 0.10 3.02 9.11 127.77 1.16 4.19 16 18 C 0.13 3.18 4.88 86.38 0.42 3.60 16 19 C -0.11 -2.46 2.39 -10.80 -0.03 -2.48 16 20 C -0.12 -2.51 4.72 30.59 0.14 -2.36 16 21 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 22 C -0.12 -1.76 5.92 30.60 0.18 -1.58 16 23 C -0.12 -1.96 5.93 30.61 0.18 -1.78 16 24 C -0.11 -1.95 5.21 30.61 0.16 -1.80 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 29 H 0.09 2.46 7.32 -2.39 -0.02 2.44 16 30 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 31 H 0.01 0.75 6.91 -2.38 -0.02 0.74 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.06 1.78 6.22 -2.39 -0.01 1.77 16 34 H 0.09 2.36 7.94 -2.38 -0.02 2.34 16 35 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 36 H 0.08 1.91 7.32 -2.39 -0.02 1.89 16 37 H 0.10 2.04 7.96 -2.39 -0.02 2.02 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.38 5.09 -2.38 -0.01 1.37 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -66.64 382.92 0.46 -66.17 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.90 Total: 19.25 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.83 Total: -16.66 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -2.88 Total: -131.10 kcal Atomic # 8 Polarization: -90.59 SS G_CDS: -4.08 Total: -94.67 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 114.06 SS G_CDS: -0.34 Total: 113.72 kcal Total: -66.64 0.46 -66.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.998 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds