Wall clock time and date at job start Tue Mar 31 2020 12:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46925 * 2 1 4 4 C 1.46501 * 119.99860 * 273.31319 * 3 2 1 5 5 C 1.50698 * 109.46887 * 278.97785 * 4 3 2 6 6 H 1.08001 * 120.00663 * 3.00521 * 5 4 3 7 7 C 1.37881 * 120.00076 * 183.00098 * 5 4 3 8 8 N 1.31518 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47006 * 60.00242 * 9 7 5 11 11 H 1.48499 * 109.47442 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47169 * 300.00494 * 9 7 5 13 13 S 1.65601 * 120.00124 * 93.31149 * 3 2 1 14 14 O 1.42093 * 106.40055 * 329.77780 * 13 3 2 15 15 O 1.42104 * 106.40407 * 196.86113 * 13 3 2 16 16 N 1.65599 * 107.21637 * 83.32091 * 13 3 2 17 17 C 1.46497 * 120.00332 * 66.45412 * 16 13 3 18 18 C 1.52996 * 109.47267 * 164.64429 * 17 16 13 19 19 H 1.08999 * 109.47292 * 304.99648 * 18 17 16 20 20 C 1.53000 * 109.46932 * 65.00126 * 18 17 16 21 21 C 1.53010 * 109.46890 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.46944 * 299.99694 * 21 20 18 23 23 C 1.53001 * 109.47420 * 59.99994 * 22 21 20 24 24 C 1.52997 * 109.46892 * 300.00351 * 23 22 21 25 25 H 1.09006 * 109.46766 * 179.97438 * 24 23 22 26 26 C 1.52997 * 109.46954 * 299.99367 * 24 23 22 27 27 H 1.09005 * 109.46832 * 305.08158 * 1 2 3 28 28 H 1.08998 * 109.47488 * 65.08520 * 1 2 3 29 29 H 1.09000 * 109.46703 * 185.09070 * 1 2 3 30 30 H 1.08997 * 109.47495 * 240.00300 * 2 1 3 31 31 H 1.08999 * 109.47332 * 119.99294 * 2 1 3 32 32 H 1.08994 * 109.47208 * 38.97978 * 4 3 2 33 33 H 1.09000 * 109.47109 * 158.98029 * 4 3 2 34 34 H 0.96999 * 120.00172 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99649 * 246.44827 * 16 13 3 36 36 H 1.09003 * 109.47040 * 44.64329 * 17 16 13 37 37 H 1.08999 * 109.46980 * 284.64366 * 17 16 13 38 38 H 1.09001 * 109.47334 * 299.99438 * 20 18 17 39 39 H 1.08990 * 109.47469 * 59.99883 * 20 18 17 40 40 H 1.08990 * 109.47240 * 59.99645 * 21 20 18 41 41 H 1.09006 * 109.46940 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.47377 * 300.00230 * 22 21 20 43 43 H 1.09002 * 109.47385 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47103 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.46653 * 59.99792 * 23 22 21 46 46 H 1.08998 * 109.47235 * 60.00850 * 26 24 23 47 47 H 1.09007 * 109.47070 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47382 * 299.99935 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1933 2.0963 -1.2666 5 6 3.5042 1.6955 -1.8927 6 1 4.1204 0.9441 -1.4215 7 6 3.9170 2.2882 -3.0672 8 7 3.1669 3.2036 -3.6409 9 14 5.5416 1.7910 -3.8436 10 1 5.5140 0.3412 -4.1638 11 1 5.7534 2.5697 -5.0902 12 1 6.6492 2.0671 -2.8938 13 16 2.3724 2.1343 1.4317 14 8 1.5045 1.5720 2.4062 15 8 2.4271 3.5261 1.1503 16 7 3.9079 1.6825 1.8566 17 6 5.0486 2.1077 1.0416 18 6 6.3437 1.9000 1.8292 19 1 6.2749 2.4192 2.7851 20 6 6.5568 0.4050 2.0750 21 6 7.8517 0.1973 2.8632 22 6 9.0306 0.7558 2.0637 23 6 8.8174 2.2508 1.8178 24 6 7.5226 2.4585 1.0297 25 1 7.3705 3.5236 0.8549 26 6 7.6198 1.7297 -0.3121 27 1 -0.3633 0.5907 0.8410 28 1 -0.3634 0.4329 -0.9320 29 1 -0.3633 -1.0236 0.0912 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.3759 1.8441 -1.9421 33 1 2.1928 3.1703 -1.0806 34 1 3.4575 3.6208 -4.4670 35 1 4.0520 1.1362 2.6452 36 1 4.9418 3.1628 0.7897 37 1 5.0813 1.5170 0.1262 38 1 5.7172 0.0071 2.6450 39 1 6.6256 -0.1142 1.1192 40 1 7.7825 0.7164 3.8190 41 1 8.0034 -0.8678 3.0387 42 1 9.0998 0.2367 1.1077 43 1 9.9531 0.6075 2.6249 44 1 9.6575 2.6487 1.2486 45 1 8.7482 2.7700 2.7737 46 1 7.7715 0.6647 -0.1369 47 1 6.6974 1.8780 -0.8737 48 1 8.4596 2.1277 -0.8817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:47 Heat of formation + Delta-G solvation = -111.495445 kcal Electronic energy + Delta-G solvation = -27439.104858 eV Core-core repulsion = 23847.368373 eV Total energy + Delta-G solvation = -3591.736485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44275 -36.59315 -35.99818 -35.14267 -34.80928 -32.70501 -31.97751 -30.48192 -29.90777 -26.85017 -26.60735 -24.87762 -23.12094 -22.18696 -21.69687 -21.16957 -18.87423 -18.23281 -17.07806 -16.77820 -16.44588 -15.79156 -15.58540 -15.22665 -14.55216 -14.40084 -14.08113 -13.78535 -13.69381 -13.29263 -12.95549 -12.84900 -12.72597 -12.60766 -12.05338 -12.00419 -11.88956 -11.66626 -11.58403 -11.46544 -11.31568 -11.25792 -11.23083 -11.09600 -11.00706 -10.91971 -10.60737 -10.41538 -10.31048 -10.12503 -10.03178 -9.93769 -9.81303 -9.76551 -8.84576 -8.48158 -8.02952 -6.10618 -4.17271 1.36921 3.24165 3.30348 3.31591 3.61271 4.23111 4.35176 4.69645 4.74278 4.75178 5.11300 5.22366 5.24937 5.26141 5.39701 5.42639 5.44624 5.45869 5.53944 5.68503 5.75607 5.77408 5.82622 5.89345 5.98503 6.02345 6.03977 6.06356 6.14081 6.17038 6.24211 6.31959 6.35899 6.38496 6.43527 6.53082 6.61711 6.70015 6.75595 6.77962 7.33666 7.41684 7.50089 7.72162 7.86700 8.16924 8.86513 9.48005 10.97281 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006711 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.629419 B = 4171.375488 C = 5996.950650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.262 1.262 13 S 2.785 3.215 14 O -1.003 7.003 15 O -0.980 6.980 16 N -1.130 6.130 17 C 0.120 3.880 18 C -0.087 4.087 19 H 0.071 0.929 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.084 4.084 25 H 0.073 0.927 26 C -0.162 4.162 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -6.213 10.001 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.187 1.187 13 S 2.793 3.207 14 O -0.987 6.987 15 O -0.963 6.963 16 N -0.889 5.889 17 C -0.006 4.006 18 C -0.107 4.107 19 H 0.090 0.910 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.104 4.104 25 H 0.091 0.909 26 C -0.219 4.219 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.427 -5.353 10.134 13.657 hybrid contribution 1.230 -0.745 -0.522 1.530 sum 8.657 -6.098 9.612 14.301 Atomic orbital electron populations 1.22224 0.97025 1.01276 1.02458 1.20930 0.93538 0.82969 1.01930 1.57717 1.78956 1.22965 1.23710 1.19201 0.97016 0.92750 0.78880 1.21490 1.05208 1.22941 1.08090 0.91837 1.24937 0.97131 0.94767 0.96871 1.69923 1.37582 1.26067 1.19034 0.86863 0.84581 0.78547 0.79106 1.20374 1.21470 1.18689 1.01719 0.72649 0.73731 0.72606 1.93541 1.64058 1.80280 1.60859 1.93572 1.86595 1.31187 1.84973 1.56002 1.24769 1.69518 1.38653 1.21544 0.83716 1.01409 0.93910 1.21356 0.94097 0.96245 0.98977 0.91027 1.21640 0.96901 0.96160 1.00790 1.21517 0.95051 1.00226 0.98684 1.21572 0.97580 0.96328 1.00402 1.21548 0.97371 0.96176 0.99864 1.21063 0.93800 1.00221 0.95280 0.90883 1.22174 1.02996 1.00328 0.96353 0.92408 0.92221 0.92522 0.90153 0.92352 0.94813 0.92778 0.92574 0.76345 0.90433 0.89381 0.92136 0.91148 0.92313 0.92405 0.91623 0.92659 0.92197 0.92286 0.92343 0.90673 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.28 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.04 2.84 -115.66 -0.33 -20.37 16 4 C 0.24 5.90 5.44 -5.19 -0.03 5.87 16 5 C -0.54 -13.35 8.63 -34.44 -0.30 -13.65 16 6 H 0.06 1.49 6.33 -52.49 -0.33 1.16 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 9 Si 0.88 19.60 29.39 -169.99 -5.00 14.60 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.40 5.69 56.52 0.32 -5.07 16 13 S 2.79 54.97 6.08 -107.50 -0.65 54.32 16 14 O -1.00 -20.48 17.00 -57.17 -0.97 -21.45 16 15 O -0.98 -22.97 15.96 -57.17 -0.91 -23.89 16 16 N -1.13 -18.06 5.94 -10.62 -0.06 -18.12 16 17 C 0.12 1.96 5.09 -4.05 -0.02 1.94 16 18 C -0.09 -1.13 2.07 -90.62 -0.19 -1.31 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.12 -1.35 4.80 -26.73 -0.13 -1.48 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 22 C -0.12 -1.20 5.65 -26.73 -0.15 -1.35 16 23 C -0.11 -1.18 5.45 -26.73 -0.15 -1.33 16 24 C -0.08 -1.08 2.72 -90.62 -0.25 -1.32 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 C -0.16 -2.29 8.03 37.16 0.30 -1.99 16 27 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 32 H 0.03 0.86 8.13 -51.93 -0.42 0.43 16 33 H 0.05 1.47 6.79 -51.93 -0.35 1.11 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.40 5.34 7.40 -34.47 -0.26 5.08 16 36 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 37 H 0.09 1.57 4.40 -51.93 -0.23 1.34 16 38 H 0.06 0.66 6.89 -51.93 -0.36 0.30 16 39 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 47 H 0.07 1.27 5.09 -51.93 -0.26 1.01 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -29.90 369.76 -10.63 -40.53 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.20 Total: 7.32 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.81 Total: -14.38 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.35 Total: -62.62 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.88 Total: -45.33 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.00 Total: 14.60 kcal Atomic # 16 Polarization: 54.97 SS G_CDS: -0.65 Total: 54.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.90 -10.63 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.967 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds