Wall clock time and date at job start Tue Mar 31 2020 12:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46925 * 2 1 4 4 C 1.46501 * 119.99860 * 273.31319 * 3 2 1 5 5 C 1.50698 * 109.46887 * 278.97785 * 4 3 2 6 6 H 1.08001 * 120.00663 * 3.00521 * 5 4 3 7 7 C 1.37881 * 120.00076 * 183.00098 * 5 4 3 8 8 N 1.31518 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47006 * 60.00242 * 9 7 5 11 11 H 1.48499 * 109.47442 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47169 * 300.00494 * 9 7 5 13 13 S 1.65601 * 120.00124 * 93.31149 * 3 2 1 14 14 O 1.42093 * 106.40055 * 329.77780 * 13 3 2 15 15 O 1.42104 * 106.40407 * 196.86113 * 13 3 2 16 16 N 1.65599 * 107.21637 * 83.32091 * 13 3 2 17 17 C 1.46497 * 120.00332 * 66.45412 * 16 13 3 18 18 C 1.52996 * 109.47267 * 164.64429 * 17 16 13 19 19 H 1.08999 * 109.47292 * 304.99648 * 18 17 16 20 20 C 1.53000 * 109.46932 * 65.00126 * 18 17 16 21 21 C 1.53010 * 109.46890 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.46944 * 299.99694 * 21 20 18 23 23 C 1.53001 * 109.47420 * 59.99994 * 22 21 20 24 24 C 1.52997 * 109.46892 * 300.00351 * 23 22 21 25 25 H 1.09006 * 109.46766 * 179.97438 * 24 23 22 26 26 C 1.52997 * 109.46954 * 299.99367 * 24 23 22 27 27 H 1.09005 * 109.46832 * 305.08158 * 1 2 3 28 28 H 1.08998 * 109.47488 * 65.08520 * 1 2 3 29 29 H 1.09000 * 109.46703 * 185.09070 * 1 2 3 30 30 H 1.08997 * 109.47495 * 240.00300 * 2 1 3 31 31 H 1.08999 * 109.47332 * 119.99294 * 2 1 3 32 32 H 1.08994 * 109.47208 * 38.97978 * 4 3 2 33 33 H 1.09000 * 109.47109 * 158.98029 * 4 3 2 34 34 H 0.96999 * 120.00172 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99649 * 246.44827 * 16 13 3 36 36 H 1.09003 * 109.47040 * 44.64329 * 17 16 13 37 37 H 1.08999 * 109.46980 * 284.64366 * 17 16 13 38 38 H 1.09001 * 109.47334 * 299.99438 * 20 18 17 39 39 H 1.08990 * 109.47469 * 59.99883 * 20 18 17 40 40 H 1.08990 * 109.47240 * 59.99645 * 21 20 18 41 41 H 1.09006 * 109.46940 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.47377 * 300.00230 * 22 21 20 43 43 H 1.09002 * 109.47385 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47103 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.46653 * 59.99792 * 23 22 21 46 46 H 1.08998 * 109.47235 * 60.00850 * 26 24 23 47 47 H 1.09007 * 109.47070 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47382 * 299.99935 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1933 2.0963 -1.2666 5 6 3.5042 1.6955 -1.8927 6 1 4.1204 0.9441 -1.4215 7 6 3.9170 2.2882 -3.0672 8 7 3.1669 3.2036 -3.6409 9 14 5.5416 1.7910 -3.8436 10 1 5.5140 0.3412 -4.1638 11 1 5.7534 2.5697 -5.0902 12 1 6.6492 2.0671 -2.8938 13 16 2.3724 2.1343 1.4317 14 8 1.5045 1.5720 2.4062 15 8 2.4271 3.5261 1.1503 16 7 3.9079 1.6825 1.8566 17 6 5.0486 2.1077 1.0416 18 6 6.3437 1.9000 1.8292 19 1 6.2749 2.4192 2.7851 20 6 6.5568 0.4050 2.0750 21 6 7.8517 0.1973 2.8632 22 6 9.0306 0.7558 2.0637 23 6 8.8174 2.2508 1.8178 24 6 7.5226 2.4585 1.0297 25 1 7.3705 3.5236 0.8549 26 6 7.6198 1.7297 -0.3121 27 1 -0.3633 0.5907 0.8410 28 1 -0.3634 0.4329 -0.9320 29 1 -0.3633 -1.0236 0.0912 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.3759 1.8441 -1.9421 33 1 2.1928 3.1703 -1.0806 34 1 3.4575 3.6208 -4.4670 35 1 4.0520 1.1362 2.6452 36 1 4.9418 3.1628 0.7897 37 1 5.0813 1.5170 0.1262 38 1 5.7172 0.0071 2.6450 39 1 6.6256 -0.1142 1.1192 40 1 7.7825 0.7164 3.8190 41 1 8.0034 -0.8678 3.0387 42 1 9.0998 0.2367 1.1077 43 1 9.9531 0.6075 2.6249 44 1 9.6575 2.6487 1.2486 45 1 8.7482 2.7700 2.7737 46 1 7.7715 0.6647 -0.1369 47 1 6.6974 1.8780 -0.8737 48 1 8.4596 2.1277 -0.8817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:46 Heat of formation + Delta-G solvation = -130.856556 kcal Electronic energy + Delta-G solvation = -27439.944419 eV Core-core repulsion = 23847.368373 eV Total energy + Delta-G solvation = -3592.576046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.42826 -38.28811 -37.65128 -36.86538 -36.07380 -34.64244 -32.90910 -31.51196 -31.49671 -28.46483 -27.91917 -26.01793 -24.90201 -23.27994 -23.08573 -22.16517 -20.37117 -19.32228 -18.63147 -18.53728 -18.19391 -17.32409 -16.83357 -16.59056 -16.09206 -15.58137 -15.40992 -14.94596 -14.84066 -14.75030 -14.55559 -14.07182 -13.89421 -13.76352 -13.60456 -13.56064 -13.35319 -13.19867 -13.12619 -12.96529 -12.73019 -12.65647 -12.59674 -12.30928 -12.29949 -12.20220 -12.08986 -11.83894 -11.73648 -11.65010 -11.53729 -11.02680 -10.90186 -10.76047 -10.49223 -10.25292 -9.75514 -8.11888 -6.24979 -0.24964 1.46979 1.48667 1.54759 2.05039 2.46697 2.65023 3.20674 3.46737 3.75695 3.82230 3.85801 4.00231 4.24667 4.32893 4.38074 4.43682 4.47870 4.51416 4.54118 4.61251 4.68783 4.72756 4.76520 4.85449 4.90196 4.98077 5.00572 5.10681 5.16159 5.18818 5.21058 5.27697 5.31339 5.32472 5.40091 5.43646 5.48620 5.50717 5.56486 5.56975 5.74154 5.81854 5.94455 6.15904 6.28455 6.86539 7.44843 8.96179 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006711 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.629419 B = 4171.375488 C = 5996.950650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.931 5.931 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.298 1.298 12 H -0.239 1.239 13 S 2.797 3.203 14 O -1.007 7.007 15 O -1.021 7.021 16 N -1.112 6.112 17 C 0.122 3.878 18 C -0.080 4.080 19 H 0.082 0.918 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.086 4.086 25 H 0.060 0.940 26 C -0.161 4.161 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.421 0.579 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 -8.479 11.650 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.571 5.571 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.225 1.225 12 H -0.162 1.162 13 S 2.806 3.194 14 O -0.991 6.991 15 O -1.004 7.004 16 N -0.875 5.875 17 C -0.004 4.004 18 C -0.100 4.100 19 H 0.100 0.900 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.145 4.145 24 C -0.105 4.105 25 H 0.079 0.921 26 C -0.218 4.218 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.564 -7.658 11.827 17.029 hybrid contribution 0.506 -0.051 -0.986 1.110 sum 10.070 -7.709 10.840 16.684 Atomic orbital electron populations 1.22210 0.96109 1.03137 1.01303 1.21230 0.94437 0.81256 1.03302 1.57608 1.79639 1.24175 1.22210 1.18738 0.96468 0.91150 0.80145 1.21765 1.05169 1.22477 1.07709 0.90404 1.25771 1.00492 0.94724 0.97611 1.70077 1.39678 1.27783 1.19598 0.85915 0.81244 0.78238 0.78083 1.19504 1.22453 1.16232 1.01161 0.73227 0.72804 0.72238 1.93526 1.64810 1.80056 1.60694 1.93524 1.87356 1.34050 1.85509 1.55582 1.23302 1.69487 1.39132 1.21502 0.85351 0.99344 0.94209 1.21331 0.92047 0.97935 0.98708 0.90015 1.21647 0.98459 0.94413 1.00941 1.21500 0.93792 1.01209 0.98578 1.21580 0.98358 0.95375 1.00489 1.21513 0.95919 0.97163 0.99869 1.21075 0.95095 0.99296 0.95078 0.92125 1.22150 1.01417 1.01453 0.96762 0.93532 0.93448 0.89108 0.90027 0.89633 0.96655 0.96412 0.92864 0.74301 0.93289 0.90753 0.91343 0.91909 0.91528 0.91127 0.92060 0.91023 0.91633 0.91421 0.91065 0.93809 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 10.24 71.98 0.74 -4.44 16 2 C 0.12 4.07 6.02 86.38 0.52 4.59 16 3 N -1.00 -40.55 2.84 -519.85 -1.47 -42.03 16 4 C 0.26 13.01 5.44 85.63 0.47 13.47 16 5 C -0.53 -26.83 8.63 25.60 0.22 -26.61 16 6 H 0.08 3.63 6.33 -2.91 -0.02 3.61 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 9 Si 0.94 40.42 29.39 68.60 2.02 42.43 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.24 -9.27 5.69 99.48 0.57 -8.71 16 13 S 2.80 110.78 6.08 -56.49 -0.34 110.44 16 14 O -1.01 -40.10 17.00 -128.00 -2.18 -42.27 16 15 O -1.02 -49.57 15.96 -128.00 -2.04 -51.61 16 16 N -1.11 -34.48 5.94 -187.50 -1.11 -35.59 16 17 C 0.12 3.95 5.09 86.38 0.44 4.39 16 18 C -0.08 -1.94 2.07 -10.80 -0.02 -1.97 16 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 20 C -0.12 -2.35 4.80 30.60 0.15 -2.21 16 21 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16 22 C -0.12 -1.95 5.65 30.59 0.17 -1.77 16 23 C -0.11 -1.96 5.45 30.59 0.17 -1.79 16 24 C -0.09 -2.07 2.72 -10.80 -0.03 -2.10 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 C -0.16 -4.32 8.03 71.98 0.58 -3.74 16 27 H 0.05 1.52 7.75 -2.38 -0.02 1.50 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 31 H 0.09 2.37 7.85 -2.39 -0.02 2.35 16 32 H 0.02 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.02 1.02 6.79 -2.39 -0.02 1.01 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 35 H 0.42 10.19 7.40 -96.74 -0.72 9.47 16 36 H 0.05 1.87 7.71 -2.39 -0.02 1.85 16 37 H 0.07 2.64 4.40 -2.39 -0.01 2.63 16 38 H 0.07 1.26 6.89 -2.39 -0.02 1.24 16 39 H 0.06 1.37 6.43 -2.39 -0.02 1.36 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.70 4.81 -2.39 -0.01 1.69 16 47 H 0.04 1.44 5.09 -2.38 -0.01 1.43 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -66.07 369.76 -0.72 -66.79 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.09 Total: 28.21 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.04 Total: -22.64 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -2.30 Total: -131.35 kcal Atomic # 8 Polarization: -89.67 SS G_CDS: -4.22 Total: -93.89 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.02 Total: 42.43 kcal Atomic # 16 Polarization: 110.78 SS G_CDS: -0.34 Total: 110.44 kcal Total: -66.07 -0.72 -66.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.064 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds