Wall clock time and date at job start Tue Mar 31 2020 12:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46788 * 2 1 4 4 C 1.46506 * 119.99891 * 85.00043 * 3 2 1 5 5 C 1.50700 * 109.46957 * 84.99777 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 S 1.65597 * 120.00189 * 264.99958 * 3 2 1 14 14 O 1.42105 * 106.40199 * 23.54157 * 13 3 2 15 15 O 1.42108 * 106.40407 * 156.46108 * 13 3 2 16 16 N 1.65604 * 107.21930 * 269.99974 * 13 3 2 17 17 C 1.46502 * 119.99640 * 65.00148 * 16 13 3 18 18 C 1.52999 * 109.46849 * 165.00106 * 17 16 13 19 19 H 1.08995 * 109.47187 * 54.99792 * 18 17 16 20 20 C 1.53000 * 109.47226 * 294.99539 * 18 17 16 21 21 C 1.52996 * 109.47522 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46821 * 60.00131 * 21 20 18 23 23 C 1.52999 * 109.47315 * 300.00077 * 22 21 20 24 24 C 1.53003 * 109.46797 * 174.99866 * 18 17 16 25 25 H 1.09004 * 109.47120 * 60.00117 * 24 18 17 26 26 C 1.52999 * 109.47315 * 299.99700 * 24 18 17 27 27 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47277 * 299.99598 * 1 2 3 29 29 H 1.08998 * 109.47476 * 60.00077 * 1 2 3 30 30 H 1.09000 * 109.46830 * 240.00554 * 2 1 3 31 31 H 1.08996 * 109.46912 * 120.00430 * 2 1 3 32 32 H 1.08994 * 109.47197 * 325.00165 * 4 3 2 33 33 H 1.08998 * 109.47414 * 204.99846 * 4 3 2 34 34 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 35 35 H 0.96993 * 120.00392 * 245.00229 * 16 13 3 36 36 H 1.08999 * 109.47050 * 284.99827 * 17 16 13 37 37 H 1.09005 * 109.47231 * 45.00109 * 17 16 13 38 38 H 1.09002 * 109.47404 * 300.00882 * 20 18 17 39 39 H 1.09005 * 109.46690 * 59.99696 * 20 18 17 40 40 H 1.09004 * 109.46870 * 300.00472 * 21 20 18 41 41 H 1.08995 * 109.47679 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.46932 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.47312 * 60.00380 * 22 21 20 44 44 H 1.09004 * 109.47367 * 300.00265 * 23 22 21 45 45 H 1.09002 * 109.47586 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.46745 * 60.00345 * 26 24 18 47 47 H 1.09001 * 109.47236 * 179.97438 * 26 24 18 48 48 H 1.08995 * 109.47178 * 300.00385 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 1.2640 5 6 3.4947 1.7888 1.8824 6 1 4.1723 1.1117 1.3835 7 6 3.8524 2.3605 3.0849 8 7 3.0271 3.1846 3.6926 9 14 5.5094 1.9646 3.8511 10 1 5.6511 2.7019 5.1323 11 1 5.6002 0.5046 4.1069 12 1 6.5942 2.3731 2.9230 13 16 2.4121 2.1203 -1.4286 14 8 1.6867 1.4415 -2.4448 15 8 2.3055 3.5187 -1.1998 16 7 4.0144 1.8139 -1.7137 17 6 4.4657 0.4415 -1.9569 18 6 5.8754 0.4660 -2.5511 19 1 6.5367 1.0311 -1.8943 20 6 5.8365 1.1294 -3.9292 21 6 7.2460 1.1534 -4.5237 22 6 7.7656 -0.2790 -4.6618 23 6 7.8046 -0.9425 -3.2837 24 6 6.3956 -0.9663 -2.6891 25 1 5.7342 -1.5313 -3.3459 26 6 6.4345 -1.6297 -1.3110 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8097 1.9453 33 1 2.0920 3.1803 1.0757 34 1 2.1668 3.3905 3.2945 35 1 4.6540 2.5430 -1.7196 36 1 4.4774 -0.1092 -1.0163 37 1 3.7855 -0.0464 -2.6551 38 1 5.1750 0.5644 -4.5860 39 1 5.4657 2.1498 -3.8309 40 1 7.9077 1.7183 -3.8670 41 1 7.2184 1.6264 -5.5053 42 1 8.7701 -0.2619 -5.0849 43 1 7.1040 -0.8439 -5.3184 44 1 8.4663 -0.3777 -2.6270 45 1 8.1752 -1.9629 -3.3820 46 1 5.4302 -1.6472 -0.8877 47 1 6.8047 -2.6503 -1.4094 48 1 7.0958 -1.0647 -0.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:49 Heat of formation + Delta-G solvation = -120.362656 kcal Electronic energy + Delta-G solvation = -26977.626379 eV Core-core repulsion = 23385.505382 eV Total energy + Delta-G solvation = -3592.120996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.34562 -36.70441 -36.15936 -35.25664 -34.92453 -32.93527 -32.74976 -30.60773 -29.88177 -26.70920 -26.16841 -25.06293 -23.15209 -21.87213 -21.74204 -21.05275 -19.96117 -18.80125 -17.29006 -17.03213 -16.49704 -16.09660 -15.15573 -14.95980 -14.82837 -14.36546 -14.19520 -14.04819 -13.76984 -13.56237 -13.22458 -13.04781 -12.74409 -12.49857 -12.28744 -12.17630 -11.93138 -11.89246 -11.66093 -11.58448 -11.53108 -11.43285 -11.36039 -11.06812 -11.01495 -10.98427 -10.93922 -10.54775 -10.50118 -10.27946 -10.15871 -10.12147 -10.03561 -9.41789 -9.02384 -8.43791 -7.95619 -6.43508 -4.17420 1.27592 3.37226 3.38881 3.48206 3.58048 4.12332 4.46917 4.50319 4.58886 4.61420 4.94711 4.97827 5.04905 5.18891 5.29712 5.31303 5.34146 5.37711 5.38739 5.48386 5.57737 5.64848 5.67106 5.72355 5.76163 5.78991 5.87548 5.92923 5.98130 6.00237 6.03306 6.12559 6.13128 6.19506 6.23644 6.32913 6.35532 6.48817 6.55679 6.60439 7.02341 7.19716 7.34948 7.56062 7.97479 8.38372 8.74470 9.54015 10.93972 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.005344 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.331227 B = 5238.527813 C = 6550.361725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.988 5.988 4 C 0.237 3.763 5 C -0.616 4.616 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.907 5.907 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.288 1.288 13 S 2.789 3.211 14 O -0.999 6.999 15 O -0.983 6.983 16 N -1.123 6.123 17 C 0.124 3.876 18 C -0.088 4.088 19 H 0.080 0.920 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.084 4.084 25 H 0.071 0.929 26 C -0.154 4.154 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.270 0.730 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -9.507 -13.560 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.829 5.829 4 C 0.114 3.886 5 C -0.655 4.655 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.542 5.542 9 Si 0.896 3.104 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.214 1.214 13 S 2.796 3.204 14 O -0.983 6.983 15 O -0.968 6.968 16 N -0.882 5.882 17 C -0.003 4.003 18 C -0.107 4.107 19 H 0.098 0.902 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.103 4.103 25 H 0.089 0.911 26 C -0.212 4.212 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.101 -8.833 -12.791 17.090 hybrid contribution -0.392 -0.261 -0.952 1.062 sum 6.708 -9.094 -13.743 17.793 Atomic orbital electron populations 1.22205 0.96902 1.01478 1.02324 1.21002 0.93728 0.82902 1.02106 1.57549 1.78761 1.22819 1.23738 1.19222 0.97638 0.91816 0.79926 1.22342 1.02605 1.31514 1.09057 0.92499 1.25763 1.04336 0.93814 0.94471 1.70789 1.09905 1.32757 1.40788 0.83565 0.74535 0.75963 0.76385 1.20741 1.21467 1.21420 1.01602 0.72928 0.72944 0.72892 1.93539 1.70956 1.76494 1.57264 1.93581 1.85946 1.31249 1.85996 1.55885 1.29050 1.14523 1.88724 1.21337 0.95927 0.82689 1.00311 1.21383 0.95885 0.96494 0.96979 0.90210 1.21601 0.96697 1.01162 0.95891 1.21542 0.96844 0.96700 1.00651 1.21539 1.00662 0.96266 0.97220 1.21574 0.96654 1.00435 0.96372 1.21099 0.96727 0.95304 0.97207 0.91063 1.21946 1.02622 1.00116 0.96466 0.92226 0.92244 0.92585 0.91863 0.90242 0.95513 0.94294 0.91974 0.75398 0.91266 0.91174 0.91815 0.91622 0.91990 0.92230 0.92356 0.92113 0.91909 0.92103 0.91884 0.92851 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.23 6.06 -4.04 -0.02 2.21 16 3 N -0.99 -20.22 2.82 -115.66 -0.33 -20.54 16 4 C 0.24 5.82 4.75 -5.19 -0.02 5.79 16 5 C -0.62 -16.12 9.38 -34.44 -0.32 -16.44 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 8 N -0.91 -26.67 13.65 55.43 0.76 -25.92 16 9 Si 1.07 24.21 29.90 -169.99 -5.08 19.13 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 13 S 2.79 55.31 6.10 -107.50 -0.66 54.65 16 14 O -1.00 -20.24 16.58 -57.17 -0.95 -21.19 16 15 O -0.98 -23.06 16.69 -57.17 -0.95 -24.01 16 16 N -1.12 -18.24 5.58 -10.61 -0.06 -18.30 16 17 C 0.12 1.71 5.42 -4.04 -0.02 1.68 16 18 C -0.09 -1.00 1.74 -90.62 -0.16 -1.16 16 19 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.12 -1.25 5.09 -26.73 -0.14 -1.39 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.11 -0.99 5.20 -26.75 -0.14 -1.13 16 24 C -0.08 -0.84 2.24 -90.64 -0.20 -1.04 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.15 -1.59 8.85 37.16 0.33 -1.26 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.96 7.61 -51.93 -0.40 0.57 16 31 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.03 0.68 7.97 -51.93 -0.41 0.26 16 33 H 0.04 1.05 6.78 -51.93 -0.35 0.70 16 34 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 35 H 0.41 6.26 8.37 -34.48 -0.29 5.97 16 36 H 0.07 0.98 6.17 -51.93 -0.32 0.66 16 37 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.75 7.54 -51.93 -0.39 0.36 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -31.84 384.59 -10.94 -42.78 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.73 Total: 4.59 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.74 Total: -16.98 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.37 Total: -64.76 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.90 Total: -45.21 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Atomic # 16 Polarization: 55.31 SS G_CDS: -0.66 Total: 54.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.84 -10.94 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.579 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds