Wall clock time and date at job start Tue Mar 31 2020 12:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46788 * 2 1 4 4 C 1.46506 * 119.99891 * 85.00043 * 3 2 1 5 5 C 1.50700 * 109.46957 * 84.99777 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 S 1.65597 * 120.00189 * 264.99958 * 3 2 1 14 14 O 1.42105 * 106.40199 * 23.54157 * 13 3 2 15 15 O 1.42108 * 106.40407 * 156.46108 * 13 3 2 16 16 N 1.65604 * 107.21930 * 269.99974 * 13 3 2 17 17 C 1.46502 * 119.99640 * 65.00148 * 16 13 3 18 18 C 1.52999 * 109.46849 * 165.00106 * 17 16 13 19 19 H 1.08995 * 109.47187 * 54.99792 * 18 17 16 20 20 C 1.53000 * 109.47226 * 294.99539 * 18 17 16 21 21 C 1.52996 * 109.47522 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46821 * 60.00131 * 21 20 18 23 23 C 1.52999 * 109.47315 * 300.00077 * 22 21 20 24 24 C 1.53003 * 109.46797 * 174.99866 * 18 17 16 25 25 H 1.09004 * 109.47120 * 60.00117 * 24 18 17 26 26 C 1.52999 * 109.47315 * 299.99700 * 24 18 17 27 27 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47277 * 299.99598 * 1 2 3 29 29 H 1.08998 * 109.47476 * 60.00077 * 1 2 3 30 30 H 1.09000 * 109.46830 * 240.00554 * 2 1 3 31 31 H 1.08996 * 109.46912 * 120.00430 * 2 1 3 32 32 H 1.08994 * 109.47197 * 325.00165 * 4 3 2 33 33 H 1.08998 * 109.47414 * 204.99846 * 4 3 2 34 34 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 35 35 H 0.96993 * 120.00392 * 245.00229 * 16 13 3 36 36 H 1.08999 * 109.47050 * 284.99827 * 17 16 13 37 37 H 1.09005 * 109.47231 * 45.00109 * 17 16 13 38 38 H 1.09002 * 109.47404 * 300.00882 * 20 18 17 39 39 H 1.09005 * 109.46690 * 59.99696 * 20 18 17 40 40 H 1.09004 * 109.46870 * 300.00472 * 21 20 18 41 41 H 1.08995 * 109.47679 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.46932 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.47312 * 60.00380 * 22 21 20 44 44 H 1.09004 * 109.47367 * 300.00265 * 23 22 21 45 45 H 1.09002 * 109.47586 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.46745 * 60.00345 * 26 24 18 47 47 H 1.09001 * 109.47236 * 179.97438 * 26 24 18 48 48 H 1.08995 * 109.47178 * 300.00385 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 1.2640 5 6 3.4947 1.7888 1.8824 6 1 4.1723 1.1117 1.3835 7 6 3.8524 2.3605 3.0849 8 7 3.0271 3.1846 3.6926 9 14 5.5094 1.9646 3.8511 10 1 5.6511 2.7019 5.1323 11 1 5.6002 0.5046 4.1069 12 1 6.5942 2.3731 2.9230 13 16 2.4121 2.1203 -1.4286 14 8 1.6867 1.4415 -2.4448 15 8 2.3055 3.5187 -1.1998 16 7 4.0144 1.8139 -1.7137 17 6 4.4657 0.4415 -1.9569 18 6 5.8754 0.4660 -2.5511 19 1 6.5367 1.0311 -1.8943 20 6 5.8365 1.1294 -3.9292 21 6 7.2460 1.1534 -4.5237 22 6 7.7656 -0.2790 -4.6618 23 6 7.8046 -0.9425 -3.2837 24 6 6.3956 -0.9663 -2.6891 25 1 5.7342 -1.5313 -3.3459 26 6 6.4345 -1.6297 -1.3110 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8097 1.9453 33 1 2.0920 3.1803 1.0757 34 1 2.1668 3.3905 3.2945 35 1 4.6540 2.5430 -1.7196 36 1 4.4774 -0.1092 -1.0163 37 1 3.7855 -0.0464 -2.6551 38 1 5.1750 0.5644 -4.5860 39 1 5.4657 2.1498 -3.8309 40 1 7.9077 1.7183 -3.8670 41 1 7.2184 1.6264 -5.5053 42 1 8.7701 -0.2619 -5.0849 43 1 7.1040 -0.8439 -5.3184 44 1 8.4663 -0.3777 -2.6270 45 1 8.1752 -1.9629 -3.3820 46 1 5.4302 -1.6472 -0.8877 47 1 6.8047 -2.6503 -1.4094 48 1 7.0958 -1.0647 -0.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:49 Heat of formation + Delta-G solvation = -140.656995 kcal Electronic energy + Delta-G solvation = -26978.506407 eV Core-core repulsion = 23385.505382 eV Total energy + Delta-G solvation = -3593.001025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19671 -38.38496 -37.84825 -36.96196 -36.06447 -34.92189 -33.54495 -31.57219 -31.44213 -28.07245 -27.56223 -26.02573 -25.02431 -23.41576 -22.63502 -21.86883 -20.91345 -20.23610 -19.09155 -18.62119 -18.23815 -17.57648 -16.51139 -15.97445 -15.75158 -15.64352 -15.59732 -15.21234 -15.02608 -14.91819 -14.69558 -14.24965 -14.07304 -13.78338 -13.76448 -13.38027 -13.29039 -13.24583 -13.08163 -13.03069 -12.83015 -12.72824 -12.62591 -12.54087 -12.32509 -12.27860 -11.94977 -11.91000 -11.71619 -11.70656 -11.29432 -11.27065 -10.98008 -10.84730 -10.54046 -10.28555 -9.75909 -8.60627 -6.36085 -0.32650 1.55307 1.62734 1.80865 1.94171 2.55908 2.59291 3.19138 3.36124 3.67208 3.76956 3.83474 3.87306 4.14164 4.25740 4.30563 4.33363 4.39256 4.45896 4.55668 4.58863 4.61017 4.66541 4.68677 4.74085 4.88002 4.90547 4.93035 4.95020 4.99891 5.05375 5.11276 5.19496 5.24786 5.30176 5.32818 5.35443 5.39981 5.42597 5.49103 5.51754 5.67425 5.73294 5.89415 6.11557 6.28511 6.54764 7.44453 8.75845 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.005344 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.331227 B = 5238.527813 C = 6550.361725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.249 3.751 5 C -0.612 4.612 6 H 0.067 0.933 7 C -0.031 4.031 8 N -0.937 5.937 9 Si 1.112 2.888 10 H -0.290 1.290 11 H -0.266 1.266 12 H -0.270 1.270 13 S 2.801 3.199 14 O -1.002 7.002 15 O -1.024 7.024 16 N -1.115 6.115 17 C 0.118 3.882 18 C -0.083 4.083 19 H 0.073 0.927 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.080 4.080 25 H 0.077 0.923 26 C -0.155 4.155 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.256 0.744 35 H 0.418 0.582 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -11.740 -14.726 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.832 5.832 4 C 0.125 3.875 5 C -0.651 4.651 6 H 0.085 0.915 7 C -0.230 4.230 8 N -0.575 5.575 9 Si 0.934 3.066 10 H -0.216 1.216 11 H -0.190 1.190 12 H -0.195 1.195 13 S 2.809 3.191 14 O -0.985 6.985 15 O -1.008 7.008 16 N -0.877 5.877 17 C -0.008 4.008 18 C -0.103 4.103 19 H 0.091 0.909 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.100 4.100 25 H 0.096 0.904 26 C -0.212 4.212 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.861 -11.093 -13.990 19.933 hybrid contribution -0.983 0.393 -0.669 1.252 sum 7.878 -10.700 -14.659 19.785 Atomic orbital electron populations 1.22199 0.95829 1.03422 1.01266 1.21293 0.94763 0.81209 1.03294 1.57480 1.79518 1.23992 1.22229 1.18804 0.96835 0.90557 0.81296 1.22632 1.03040 1.30693 1.08747 0.91484 1.27210 1.07005 0.93218 0.95523 1.70915 1.10043 1.34895 1.41630 0.83003 0.71109 0.76979 0.75542 1.21598 1.19047 1.19532 1.01081 0.73627 0.71828 0.72590 1.93528 1.71702 1.76256 1.57037 1.93524 1.86886 1.33965 1.86468 1.55630 1.27782 1.16032 1.88232 1.21584 0.97563 0.80977 1.00667 1.21360 0.94102 0.97798 0.97001 0.90868 1.21614 0.97864 1.00438 0.95607 1.21531 0.95659 0.97564 1.00813 1.21533 1.01376 0.95448 0.97096 1.21559 0.95632 1.01212 0.96375 1.21087 0.97621 0.93966 0.97295 0.90417 1.21951 1.01938 1.00924 0.96397 0.88804 0.93554 0.93370 0.89429 0.90199 0.96702 0.97340 0.93493 0.74722 0.91410 0.90543 0.91717 0.92697 0.92231 0.91522 0.91209 0.91719 0.92308 0.90841 0.92778 0.91411 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 10.24 71.98 0.74 -4.38 16 2 C 0.12 3.98 6.06 86.38 0.52 4.51 16 3 N -0.99 -40.61 2.82 -519.85 -1.47 -42.08 16 4 C 0.25 12.55 4.75 85.63 0.41 12.95 16 5 C -0.61 -32.02 9.38 25.60 0.24 -31.78 16 6 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 7 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 8 N -0.94 -56.30 13.65 21.45 0.29 -56.01 16 9 Si 1.11 47.84 29.90 68.60 2.05 49.89 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 13 S 2.80 111.11 6.10 -56.49 -0.34 110.77 16 14 O -1.00 -39.75 16.58 -128.00 -2.12 -41.87 16 15 O -1.02 -49.25 16.69 -128.00 -2.14 -51.39 16 16 N -1.11 -35.52 5.58 -187.48 -1.05 -36.56 16 17 C 0.12 3.06 5.42 86.38 0.47 3.53 16 18 C -0.08 -1.75 1.74 -10.79 -0.02 -1.77 16 19 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 20 C -0.12 -2.35 5.09 30.59 0.16 -2.19 16 21 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 22 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 23 C -0.11 -1.64 5.20 30.58 0.16 -1.48 16 24 C -0.08 -1.40 2.24 -10.81 -0.02 -1.43 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.15 -2.83 8.85 71.98 0.64 -2.20 16 27 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.48 7.61 -2.39 -0.02 2.46 16 31 H 0.08 2.65 8.11 -2.39 -0.02 2.64 16 32 H 0.01 0.78 7.97 -2.39 -0.02 0.76 16 33 H 0.01 0.49 6.78 -2.39 -0.02 0.47 16 34 H 0.26 15.63 7.22 -92.70 -0.67 14.96 16 35 H 0.42 12.55 8.37 -96.75 -0.81 11.74 16 36 H 0.07 1.81 6.17 -2.39 -0.01 1.79 16 37 H 0.08 1.90 7.75 -2.38 -0.02 1.88 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.20 7.54 -2.38 -0.02 1.18 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 1.07 6.32 -2.39 -0.02 1.06 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -68.34 384.59 -0.46 -68.79 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.21 Total: 27.15 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.11 Total: -28.68 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -2.22 Total: -134.66 kcal Atomic # 8 Polarization: -89.00 SS G_CDS: -4.26 Total: -93.26 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.05 Total: 49.89 kcal Atomic # 16 Polarization: 111.11 SS G_CDS: -0.34 Total: 110.77 kcal Total: -68.34 -0.46 -68.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.863 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds