Wall clock time and date at job start Tue Mar 31 2020 12:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46905 * 2 1 4 4 C 1.46505 * 119.99983 * 276.44201 * 3 2 1 5 5 C 1.50703 * 109.46988 * 275.00371 * 4 3 2 6 6 H 1.07991 * 119.99958 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00483 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46840 * 59.99872 * 9 7 5 11 11 H 1.48494 * 109.47342 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47151 * 300.00300 * 9 7 5 13 13 S 1.65598 * 120.00284 * 96.44153 * 3 2 1 14 14 O 1.42095 * 106.40404 * 160.11086 * 13 3 2 15 15 O 1.42100 * 106.39728 * 27.19011 * 13 3 2 16 16 N 1.65595 * 107.21870 * 273.65216 * 13 3 2 17 17 C 1.46927 * 120.63217 * 95.89513 * 16 13 3 18 18 C 1.53194 * 108.76473 * 126.40827 * 17 16 13 19 19 H 1.09004 * 109.50793 * 294.69373 * 18 17 16 20 20 C 1.53000 * 109.48832 * 174.60465 * 18 17 16 21 21 C 1.53038 * 109.31698 * 54.65567 * 18 17 16 22 22 C 1.53043 * 109.52500 * 298.61732 * 21 18 17 23 23 C 1.53001 * 109.49827 * 181.32371 * 22 21 18 24 24 C 1.53003 * 109.49772 * 301.38448 * 22 21 18 25 25 C 1.46926 * 120.63279 * 275.91857 * 16 13 3 26 26 H 1.09000 * 109.46579 * 185.10626 * 1 2 3 27 27 H 1.08991 * 109.47506 * 305.10909 * 1 2 3 28 28 H 1.08997 * 109.46972 * 65.11031 * 1 2 3 29 29 H 1.09000 * 109.46984 * 240.00021 * 2 1 3 30 30 H 1.09003 * 109.47007 * 119.99708 * 2 1 3 31 31 H 1.09005 * 109.47084 * 34.99911 * 4 3 2 32 32 H 1.09001 * 109.47096 * 154.99821 * 4 3 2 33 33 H 0.96993 * 120.00785 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.58808 * 246.20031 * 17 16 13 35 35 H 1.09001 * 109.58685 * 6.48542 * 17 16 13 36 36 H 1.09005 * 109.46606 * 300.16533 * 20 18 17 37 37 H 1.08997 * 109.47333 * 60.16402 * 20 18 17 38 38 H 1.08998 * 109.47468 * 180.16952 * 20 18 17 39 39 H 1.08992 * 109.46194 * 178.60383 * 21 18 17 40 40 H 1.08996 * 109.45785 * 58.62330 * 21 18 17 41 41 H 1.08994 * 109.47216 * 59.99627 * 23 22 21 42 42 H 1.09000 * 109.46901 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46850 * 299.99485 * 23 22 21 44 44 H 1.08999 * 109.46895 * 65.55781 * 24 22 21 45 45 H 1.08998 * 109.46987 * 185.55384 * 24 22 21 46 46 H 1.08996 * 109.47379 * 305.55932 * 24 22 21 47 47 H 1.08996 * 109.59245 * 113.79664 * 25 16 13 48 48 H 1.09004 * 109.70076 * 353.44170 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1283 2.1193 -1.2608 5 6 3.4497 1.8047 -1.9134 6 1 4.1388 1.1235 -1.4366 7 6 3.7792 2.3874 -3.1187 8 7 2.9402 3.2173 -3.6992 9 14 5.4175 1.9980 -3.9275 10 1 5.5016 0.5404 -4.1987 11 1 5.5289 2.7461 -5.2054 12 1 6.5241 2.3975 -3.0214 13 16 2.4460 2.1083 1.4250 14 8 3.2863 3.2015 1.0814 15 8 2.8473 1.0654 2.3028 16 7 1.0700 2.7622 2.0740 17 6 0.2956 2.0269 3.0832 18 6 0.1073 2.9246 4.3102 19 1 1.0755 3.1174 4.7723 20 6 -0.8099 2.2273 5.3169 21 6 -0.5244 4.2493 3.8761 22 6 0.4078 4.9629 2.8943 23 6 -0.2090 6.3023 2.4861 24 6 1.7626 5.2071 3.5620 25 6 0.5999 4.0884 1.6512 26 1 -0.3632 -1.0236 0.0915 27 1 -0.3634 0.5910 0.8406 28 1 -0.3633 0.4325 -0.9322 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3158 1.8259 -1.9256 32 1 2.0667 3.1892 -1.0620 33 1 3.1719 3.6270 -4.5473 34 1 -0.6781 1.7593 2.6731 35 1 0.8330 1.1225 3.3686 36 1 -1.7773 2.0336 4.8535 37 1 -0.3596 1.2839 5.6258 38 1 -0.9462 2.8675 6.1885 39 1 -0.6823 4.8801 4.7507 40 1 -1.4810 4.0538 3.3916 41 1 -0.3481 6.9230 3.3712 42 1 0.4551 6.8099 1.7866 43 1 -1.1735 6.1278 2.0094 44 1 2.2465 4.2511 3.7623 45 1 2.3923 5.8012 2.8997 46 1 1.6143 5.7427 4.4996 47 1 -0.3490 3.9890 1.1243 48 1 1.3374 4.5469 0.9924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336943223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:02 Heat of formation + Delta-G solvation = -97.372804 kcal Electronic energy + Delta-G solvation = -27690.063272 eV Core-core repulsion = 24098.939191 eV Total energy + Delta-G solvation = -3591.124081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.51333 -36.69091 -36.00356 -35.11762 -34.24670 -33.35964 -32.64444 -29.95897 -27.28091 -26.84505 -26.70285 -26.58337 -24.27753 -23.11069 -21.62773 -20.76843 -18.90862 -18.12608 -17.38288 -16.66160 -16.25618 -15.82974 -15.22424 -14.97259 -14.63262 -14.33573 -14.09727 -13.85529 -13.59851 -13.29631 -13.08854 -12.88080 -12.49539 -12.33272 -12.11795 -12.07768 -11.99138 -11.93773 -11.68896 -11.65458 -11.52060 -11.42077 -11.30487 -11.13156 -10.97778 -10.91026 -10.84066 -10.65401 -10.46047 -10.39616 -10.20679 -10.16261 -9.96867 -9.74755 -8.72752 -8.41547 -8.03067 -6.04673 -4.08552 1.22965 3.34672 3.38031 3.42657 3.50995 4.09983 4.45931 4.57927 4.67595 4.75368 4.88070 5.08966 5.19030 5.24320 5.28950 5.30352 5.42446 5.51215 5.56171 5.56568 5.64690 5.69695 5.70799 5.75580 5.78338 5.84087 5.86955 5.97777 5.98768 6.01177 6.05714 6.07418 6.16296 6.24611 6.27184 6.31212 6.48811 6.51437 6.61069 6.64454 6.86700 7.27572 7.44904 7.66254 7.92931 8.23112 8.93465 9.56503 11.03794 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.004828 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.608163 B = 5798.319119 C = 6436.427586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.961 6.961 15 O -0.998 6.998 16 N -1.009 6.009 17 C 0.124 3.876 18 C -0.108 4.108 19 H 0.077 0.923 20 C -0.145 4.145 21 C -0.097 4.097 22 C -0.077 4.077 23 C -0.140 4.140 24 C -0.141 4.141 25 C 0.132 3.868 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 0.652 14.613 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.945 6.945 15 O -0.982 6.982 16 N -0.846 5.846 17 C -0.002 4.002 18 C -0.128 4.128 19 H 0.095 0.905 20 C -0.203 4.203 21 C -0.135 4.135 22 C -0.078 4.078 23 C -0.198 4.198 24 C -0.198 4.198 25 C 0.006 3.994 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.115 0.796 14.785 17.931 hybrid contribution 0.452 -0.161 -0.787 0.922 sum -9.663 0.635 13.998 17.021 Atomic orbital electron populations 1.22254 0.97229 1.01138 1.02283 1.21119 0.93103 0.83337 1.03318 1.57788 1.80832 1.21272 1.23405 1.19010 0.97368 0.90945 0.79002 1.21456 1.02737 1.27318 1.05356 0.92345 1.24910 0.97199 0.94807 0.96956 1.69904 1.35923 1.29827 1.17810 0.86602 0.84189 0.78402 0.78534 1.20187 1.21160 1.20013 1.02081 0.73354 0.73215 0.72656 1.93613 1.63173 1.54053 1.83648 1.93496 1.80893 1.57894 1.65929 1.58391 1.46156 1.26818 1.53273 1.21425 0.96445 0.94626 0.87672 1.21524 0.99996 0.95590 0.95660 0.90467 1.21774 0.99421 1.00468 0.98590 1.21588 0.98029 0.95483 0.98398 1.20862 0.96067 0.95121 0.95795 1.21813 1.00725 0.95875 1.01345 1.21874 0.96100 1.01719 1.00094 1.21433 1.00797 0.81543 0.95600 0.92394 0.93160 0.92035 0.89868 0.90852 0.94792 0.94506 0.92675 0.91860 0.89204 0.92598 0.92446 0.92596 0.92023 0.91885 0.92591 0.92091 0.92549 0.92739 0.92046 0.92941 0.91689 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.23 37.16 0.38 -2.04 16 2 C 0.12 2.08 6.41 -4.04 -0.03 2.05 16 3 N -0.99 -20.79 2.83 -115.65 -0.33 -21.12 16 4 C 0.26 6.48 5.11 -5.19 -0.03 6.45 16 5 C -0.53 -14.92 9.38 -34.44 -0.32 -15.25 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 56.52 6.09 -107.50 -0.65 55.86 16 14 O -0.96 -23.14 15.76 -57.17 -0.90 -24.04 16 15 O -1.00 -21.18 15.21 -57.17 -0.87 -22.05 16 16 N -1.01 -15.66 2.70 -113.52 -0.31 -15.97 16 17 C 0.12 1.57 5.29 -3.71 -0.02 1.55 16 18 C -0.11 -1.16 2.53 -90.50 -0.23 -1.39 16 19 H 0.08 0.91 6.46 -51.93 -0.34 0.58 16 20 C -0.14 -1.23 9.20 37.16 0.34 -0.88 16 21 C -0.10 -0.98 3.99 -26.69 -0.11 -1.09 16 22 C -0.08 -0.91 0.77 -154.39 -0.12 -1.03 16 23 C -0.14 -1.42 8.48 37.16 0.32 -1.11 16 24 C -0.14 -1.81 7.87 37.16 0.29 -1.52 16 25 C 0.13 1.90 5.13 -3.71 -0.02 1.88 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.08 1.52 8.12 -51.93 -0.42 1.09 16 30 H 0.07 1.23 6.94 -51.93 -0.36 0.87 16 31 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.04 0.98 7.51 -51.93 -0.39 0.59 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.70 7.51 -51.93 -0.39 0.31 16 35 H 0.09 1.20 6.79 -51.93 -0.35 0.85 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.78 6.15 -51.93 -0.32 0.46 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.09 1.56 7.08 -51.93 -0.37 1.19 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -32.24 380.20 -10.01 -42.25 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.76 Total: -1.59 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 0.36 Total: -10.66 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.10 Total: -62.41 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.77 Total: -46.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 56.52 SS G_CDS: -0.65 Total: 55.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.24 -10.01 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336943223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.124 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds