Wall clock time and date at job start Tue Mar 31 2020 12:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47541 * 2 1 4 4 C 1.46498 * 119.99624 * 274.99807 * 3 2 1 5 5 C 1.50697 * 109.47255 * 274.99849 * 4 3 2 6 6 H 1.08006 * 119.99704 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00382 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99643 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00280 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47219 * 119.99815 * 9 7 5 12 12 H 1.48493 * 109.47049 * 239.99913 * 9 7 5 13 13 S 1.65601 * 120.00200 * 94.99464 * 3 2 1 14 14 O 1.42098 * 106.40069 * 336.46254 * 13 3 2 15 15 O 1.42102 * 106.40008 * 203.54234 * 13 3 2 16 16 N 1.65596 * 107.21569 * 90.00450 * 13 3 2 17 17 C 1.47420 * 125.64975 * 90.02512 * 16 13 3 18 18 C 1.54910 * 104.83315 * 204.08979 * 17 16 13 19 19 C 1.55161 * 101.58272 * 322.99025 * 18 17 16 20 20 H 1.09004 * 110.71875 * 277.13951 * 19 18 17 21 21 C 1.52989 * 110.72311 * 154.04228 * 19 18 17 22 22 C 1.53000 * 109.47166 * 66.31705 * 21 19 18 23 23 C 1.53004 * 109.47519 * 186.31791 * 21 19 18 24 24 C 1.53000 * 109.47363 * 306.32086 * 21 19 18 25 25 C 1.47032 * 125.64647 * 269.71394 * 16 13 3 26 26 H 1.08993 * 109.46971 * 300.00785 * 1 2 3 27 27 H 1.09003 * 109.46653 * 60.00131 * 1 2 3 28 28 H 1.08993 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47455 * 239.99013 * 2 1 3 30 30 H 1.09010 * 109.47038 * 119.99886 * 2 1 3 31 31 H 1.09007 * 109.47179 * 34.99494 * 4 3 2 32 32 H 1.08997 * 109.46979 * 154.99518 * 4 3 2 33 33 H 0.97001 * 119.99255 * 180.02562 * 8 7 5 34 34 H 1.09004 * 110.36804 * 322.92527 * 17 16 13 35 35 H 1.09001 * 110.36673 * 85.25481 * 17 16 13 36 36 H 1.08995 * 111.00764 * 81.06211 * 18 17 16 37 37 H 1.08998 * 111.00490 * 204.91926 * 18 17 16 38 38 H 1.09004 * 109.47112 * 60.00529 * 22 21 19 39 39 H 1.09000 * 109.47082 * 179.97438 * 22 21 19 40 40 H 1.08996 * 109.47638 * 300.00328 * 22 21 19 41 41 H 1.09005 * 109.46818 * 59.99877 * 23 21 19 42 42 H 1.09000 * 109.47684 * 179.97438 * 23 21 19 43 43 H 1.09001 * 109.46781 * 300.00333 * 23 21 19 44 44 H 1.08998 * 109.47308 * 66.00103 * 24 21 19 45 45 H 1.09001 * 109.47479 * 186.00731 * 24 21 19 46 46 H 1.09003 * 109.46882 * 305.99982 * 24 21 19 47 47 H 1.09004 * 109.87954 * 298.39715 * 25 16 13 48 48 H 1.08996 * 109.88003 * 59.56243 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1722 1.1108 -1.3838 7 6 3.8532 2.3610 -3.0844 8 7 3.0283 3.1860 -3.6916 9 14 5.5102 1.9650 -3.8505 10 1 6.2460 1.0169 -2.9759 11 1 5.3036 1.3477 -5.1853 12 1 6.2980 3.2148 -3.9997 13 16 2.4123 2.1203 1.4287 14 8 1.6868 1.4416 2.4447 15 8 2.3058 3.5187 1.1997 16 7 4.0144 1.8137 1.7137 17 6 5.1423 2.6504 1.2654 18 6 6.3544 1.6872 1.2130 19 6 6.0862 0.7817 2.4441 20 1 6.4437 1.2570 3.3576 21 6 6.7377 -0.5901 2.2593 22 6 8.2598 -0.4347 2.2497 23 6 6.3263 -1.5095 3.4110 24 6 6.2789 -1.1982 0.9325 25 6 4.5473 0.6654 2.4615 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8934 -0.5139 0.8901 31 1 1.3619 1.8095 -1.9454 32 1 2.0923 3.1801 -1.0757 33 1 3.2802 3.5884 -4.5374 34 1 4.9406 3.0604 0.2757 35 1 5.3264 3.4532 1.9793 36 1 6.3512 1.1048 0.2916 37 1 7.2917 2.2321 1.3256 38 1 8.5868 -0.0016 3.1950 39 1 8.7240 -1.4122 2.1185 40 1 8.5530 0.2202 1.4293 41 1 5.2419 -1.6203 3.4179 42 1 6.7901 -2.4871 3.2792 43 1 6.6532 -1.0763 4.3563 44 1 6.6633 -0.6000 0.1064 45 1 6.6567 -2.2173 0.8498 46 1 5.1895 -1.2106 0.8960 47 1 4.1832 0.6906 3.4886 48 1 4.2422 -0.2639 1.9805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336943889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:37 Heat of formation + Delta-G solvation = -92.819012 kcal Electronic energy + Delta-G solvation = -27776.052977 eV Core-core repulsion = 24185.126363 eV Total energy + Delta-G solvation = -3590.926614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.45860 -36.62737 -35.98597 -35.59337 -35.16500 -32.70903 -30.01321 -29.91990 -28.58507 -27.29043 -27.03047 -26.58426 -23.12516 -22.47012 -21.66200 -21.43912 -18.40513 -18.23977 -17.14984 -16.95220 -16.28343 -16.00768 -15.39197 -14.63397 -14.49031 -14.17311 -14.01346 -13.93951 -13.37180 -13.35812 -12.92722 -12.80963 -12.63494 -12.26941 -12.23428 -12.05465 -11.94036 -11.67376 -11.65639 -11.61832 -11.41022 -11.32082 -11.27519 -11.13101 -11.07205 -10.94363 -10.88218 -10.50088 -10.38915 -10.33053 -10.27012 -10.15454 -10.04257 -9.74251 -8.57052 -8.47977 -8.01968 -6.11256 -4.17266 1.28633 3.22107 3.30448 3.31972 3.55690 4.16869 4.35163 4.50246 4.67425 4.72186 4.96897 5.08338 5.22457 5.29487 5.31969 5.42982 5.49147 5.57222 5.58475 5.63549 5.72914 5.76851 5.78861 5.82733 5.85689 5.91756 5.95299 6.02597 6.09962 6.12621 6.13987 6.21723 6.28845 6.32671 6.37882 6.41165 6.56502 6.64933 6.67895 6.68547 6.87435 7.37433 7.47261 7.68326 7.86749 8.16695 8.88429 9.48370 10.96886 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.007074 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.557255 B = 3957.306830 C = 5437.709410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.535 4.535 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.283 1.283 13 S 2.798 3.202 14 O -0.997 6.997 15 O -0.976 6.976 16 N -1.014 6.014 17 C 0.124 3.876 18 C -0.129 4.129 19 C -0.086 4.086 20 H 0.079 0.921 21 C -0.060 4.060 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.149 4.149 25 C 0.127 3.873 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -8.329 10.888 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.122 3.878 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 S 2.808 3.192 14 O -0.982 6.982 15 O -0.960 6.960 16 N -0.853 5.853 17 C -0.002 4.002 18 C -0.168 4.168 19 C -0.106 4.106 20 H 0.098 0.902 21 C -0.060 4.060 22 C -0.196 4.196 23 C -0.201 4.201 24 C -0.206 4.206 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.246 -7.671 11.257 14.986 hybrid contribution 1.153 -0.404 -0.901 1.518 sum 7.399 -8.075 10.356 15.073 Atomic orbital electron populations 1.22206 0.96960 1.01349 1.02382 1.20954 0.93621 0.83032 1.01912 1.57801 1.78238 1.22862 1.24294 1.19192 0.97346 0.92192 0.79040 1.21596 1.02174 1.27760 1.05894 0.91749 1.24952 0.97110 0.94906 0.96926 1.69949 1.35880 1.29946 1.17034 0.86575 0.84111 0.78244 0.79292 1.19563 1.21077 1.20906 1.01376 0.71776 0.73312 0.72779 1.93524 1.70241 1.76573 1.57821 1.93571 1.85611 1.30827 1.86022 1.59078 1.23747 1.34584 1.67889 1.21935 0.84962 0.92554 1.00714 1.22969 0.97578 0.97482 0.98730 1.22260 0.93996 0.95309 0.99012 0.90232 1.20473 0.95366 0.94248 0.95936 1.21851 0.94527 1.01502 1.01727 1.21919 1.01618 0.98923 0.97606 1.22048 1.02007 1.00105 0.96460 1.21747 0.93802 0.88843 0.95528 0.92684 0.92064 0.92379 0.90304 0.92166 0.94456 0.93273 0.92700 0.89025 0.92445 0.89550 0.90735 0.92889 0.92880 0.92354 0.92341 0.92795 0.92769 0.91845 0.93010 0.91875 0.92083 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.31 6.06 -4.04 -0.02 2.29 16 3 N -0.99 -20.61 2.83 -115.66 -0.33 -20.94 16 4 C 0.24 6.02 5.43 -5.20 -0.03 6.00 16 5 C -0.53 -13.62 9.35 -34.44 -0.32 -13.94 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 9 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 S 2.80 57.73 6.31 -107.50 -0.68 57.05 16 14 O -1.00 -20.97 16.69 -57.17 -0.95 -21.92 16 15 O -0.98 -23.39 16.28 -57.17 -0.93 -24.32 16 16 N -1.01 -17.68 3.75 -111.41 -0.42 -18.10 16 17 C 0.12 2.04 6.98 -2.53 -0.02 2.02 16 18 C -0.13 -1.74 5.55 -24.58 -0.14 -1.87 16 19 C -0.09 -1.02 2.29 -88.78 -0.20 -1.23 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.06 -0.62 0.57 -154.51 -0.09 -0.71 16 22 C -0.14 -1.29 8.32 37.16 0.31 -0.98 16 23 C -0.14 -1.33 8.24 37.16 0.31 -1.03 16 24 C -0.15 -1.75 7.76 37.16 0.29 -1.46 16 25 C 0.13 1.80 5.41 -3.05 -0.02 1.79 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.06 0.95 7.61 -51.92 -0.40 0.56 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.09 1.75 8.11 -51.93 -0.42 1.33 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.28 5.72 -51.93 -0.30 0.98 16 37 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.56 7.48 -51.93 -0.39 0.18 16 41 H 0.06 0.56 7.06 -51.93 -0.37 0.20 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.80 6.00 -51.93 -0.31 0.49 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.91 5.42 -51.93 -0.28 0.63 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -30.50 382.32 -10.09 -40.59 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.61 Total: 0.97 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 0.35 Total: -9.88 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.01 Total: -63.46 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.88 Total: -46.24 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 57.73 SS G_CDS: -0.68 Total: 57.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.50 -10.09 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336943889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.225 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds