Wall clock time and date at job start Tue Mar 31 2020 12:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46495 * 119.99753 * 275.00325 * 3 2 1 5 5 C 1.50698 * 109.47121 * 84.99977 * 4 3 2 6 6 H 1.07997 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99987 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47711 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47098 * 119.99996 * 9 7 5 12 12 H 1.48497 * 109.47023 * 239.99479 * 9 7 5 13 13 S 1.65602 * 120.00006 * 94.99676 * 3 2 1 14 14 O 1.42097 * 106.40599 * 203.54158 * 13 3 2 15 15 O 1.42097 * 106.40158 * 336.46648 * 13 3 2 16 16 N 1.65602 * 107.21332 * 90.00139 * 13 3 2 17 17 C 1.46930 * 120.62983 * 90.00372 * 16 13 3 18 18 C 1.53187 * 108.77549 * 233.58613 * 17 16 13 19 19 C 1.53043 * 109.31338 * 305.36215 * 18 17 16 20 20 H 1.09004 * 109.45789 * 301.35082 * 19 18 17 21 21 C 1.52999 * 109.46391 * 181.37464 * 19 18 17 22 22 C 1.53045 * 109.53769 * 61.36344 * 19 18 17 23 23 C 1.52999 * 109.49402 * 58.59093 * 22 19 18 24 24 C 1.52999 * 109.49652 * 178.65438 * 22 19 18 25 25 C 1.46926 * 120.63401 * 269.71871 * 16 13 3 26 26 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 29 29 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 30 30 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 31 31 H 1.09002 * 109.46665 * 204.99493 * 4 3 2 32 32 H 1.08998 * 109.47564 * 324.99734 * 4 3 2 33 33 H 0.97007 * 119.99956 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.58340 * 353.36900 * 17 16 13 35 35 H 1.08995 * 109.58777 * 113.79145 * 17 16 13 36 36 H 1.09002 * 109.50262 * 65.31142 * 18 17 16 37 37 H 1.08999 * 109.49912 * 185.37935 * 18 17 16 38 38 H 1.08996 * 109.47044 * 59.99578 * 21 19 18 39 39 H 1.08999 * 109.47106 * 180.02562 * 21 19 18 40 40 H 1.08996 * 109.46700 * 299.99757 * 21 19 18 41 41 H 1.09000 * 109.47315 * 60.00065 * 23 22 19 42 42 H 1.08996 * 109.46870 * 179.97438 * 23 22 19 43 43 H 1.08997 * 109.47247 * 300.00031 * 23 22 19 44 44 H 1.09003 * 109.47338 * 60.00056 * 24 22 19 45 45 H 1.08995 * 109.46950 * 180.02562 * 24 22 19 46 46 H 1.08998 * 109.47356 * 300.00148 * 24 22 19 47 47 H 1.09001 * 109.58690 * 246.20096 * 25 16 13 48 48 H 1.09001 * 109.58637 * 6.63232 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 0.8360 2.7288 -1.6355 6 1 -0.0228 2.5942 -0.9946 7 6 0.7225 3.4681 -2.7938 8 7 1.7684 3.6325 -3.5740 9 14 -0.9166 4.2362 -3.2548 10 1 -1.9275 3.9049 -2.2188 11 1 -0.7645 5.7107 -3.3449 12 1 -1.3611 3.7034 -4.5677 13 16 2.4122 2.1203 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4415 2.4448 16 7 4.0144 1.8137 1.7137 17 6 5.0517 2.7258 1.2129 18 6 6.0673 1.9180 0.3988 19 6 6.6020 0.7675 1.2548 20 1 7.0645 1.1701 2.1560 21 6 7.6421 -0.0212 0.4567 22 6 5.4483 -0.1595 1.6445 23 6 4.7763 -0.6978 0.3798 24 6 5.9889 -1.3273 2.4721 25 6 4.4254 0.6278 2.4775 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9079 2.8918 -1.1512 32 1 2.4689 1.4183 -2.0481 33 1 1.6887 4.1529 -4.3888 34 1 4.5951 3.4848 0.5776 35 1 5.5546 3.2040 2.0533 36 1 5.5827 1.5149 -0.4905 37 1 6.8926 2.5650 0.1017 38 1 8.4644 0.6385 0.1799 39 1 8.0226 -0.8408 1.0661 40 1 7.1797 -0.4234 -0.4447 41 1 5.5050 -1.2533 -0.2106 42 1 3.9551 -1.3583 0.6578 43 1 4.3904 0.1344 -0.2089 44 1 6.4666 -0.9435 3.3735 45 1 5.1670 -1.9875 2.7490 46 1 6.7183 -1.8832 1.8830 47 1 4.8784 0.9384 3.4190 48 1 3.5555 0.0020 2.6770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336949495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:47 Heat of formation + Delta-G solvation = -91.754236 kcal Electronic energy + Delta-G solvation = -28121.171181 eV Core-core repulsion = 24530.290739 eV Total energy + Delta-G solvation = -3590.880442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70393 -36.66392 -36.01686 -35.12054 -34.38896 -32.60361 -32.51186 -29.78308 -28.29346 -27.29924 -26.69819 -26.34166 -22.77539 -22.65199 -21.96580 -21.76143 -18.66735 -18.04116 -17.15502 -16.86905 -16.34232 -15.74935 -15.22911 -14.86558 -14.61019 -14.28037 -14.10876 -13.79605 -13.55594 -13.16190 -13.09995 -12.95621 -12.57415 -12.27001 -12.20407 -11.98334 -11.84248 -11.80712 -11.77162 -11.49734 -11.34578 -11.25725 -11.21688 -11.08263 -11.00734 -10.96328 -10.92291 -10.63203 -10.44250 -10.34305 -10.12400 -10.05360 -9.86300 -9.56352 -8.72407 -8.41508 -8.02680 -6.04399 -4.06801 1.23782 3.31734 3.39732 3.44552 3.51859 4.12747 4.46515 4.58447 4.70468 4.71258 4.94186 5.12114 5.20576 5.29915 5.31352 5.34646 5.46201 5.48912 5.49603 5.66058 5.67162 5.71569 5.81596 5.83068 5.88106 5.90363 5.95671 5.97230 6.02121 6.03081 6.11092 6.16426 6.22792 6.30083 6.32381 6.42559 6.53685 6.61971 6.70309 6.88002 7.01083 7.25840 7.45588 7.67625 7.94118 8.24402 8.95698 9.57870 11.04246 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.005112 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.974312 B = 5476.110523 C = 5857.374489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 N -0.991 5.991 4 C 0.261 3.739 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.285 1.285 13 S 2.777 3.223 14 O -0.964 6.964 15 O -0.996 6.996 16 N -1.010 6.010 17 C 0.123 3.877 18 C -0.133 4.133 19 C -0.076 4.076 20 H 0.067 0.933 21 C -0.149 4.149 22 C -0.074 4.074 23 C -0.151 4.151 24 C -0.141 4.141 25 C 0.134 3.866 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 -9.821 9.125 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 N -0.833 5.833 4 C 0.139 3.861 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.211 1.211 13 S 2.787 3.213 14 O -0.948 6.948 15 O -0.980 6.980 16 N -0.847 5.847 17 C -0.002 4.002 18 C -0.172 4.172 19 C -0.094 4.094 20 H 0.085 0.915 21 C -0.206 4.206 22 C -0.076 4.076 23 C -0.208 4.208 24 C -0.199 4.199 25 C 0.008 3.992 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.618 -9.203 9.513 16.969 hybrid contribution -0.598 0.284 -0.653 0.930 sum 10.020 -8.920 8.861 16.077 Atomic orbital electron populations 1.22269 0.96525 1.00740 1.03651 1.20966 0.94654 0.82443 1.00828 1.57817 1.78276 1.22841 1.24346 1.19002 0.97359 0.90789 0.78992 1.21575 0.96415 1.31573 1.06642 0.91925 1.24916 0.96744 0.96068 0.96288 1.69924 1.29165 1.40781 1.13711 0.86515 0.84002 0.79205 0.78168 1.19680 1.20894 1.21072 1.02125 0.72534 0.73637 0.73045 1.93613 1.85203 1.30336 1.85653 1.93518 1.70222 1.76470 1.57797 1.58441 1.25100 1.33608 1.67585 1.21355 0.89475 0.91498 0.97910 1.22039 0.98716 0.97173 0.99234 1.21042 0.94757 0.95168 0.98447 0.91472 1.21937 0.98395 0.99936 1.00383 1.20978 0.95393 0.94988 0.96208 1.22084 1.00164 1.01579 0.96996 1.21879 1.00988 0.97562 0.99502 1.21483 0.98434 0.85857 0.93445 0.90281 0.93197 0.92906 0.91207 0.92376 0.94739 0.94885 0.92865 0.88893 0.91846 0.90513 0.91133 0.93019 0.92659 0.92253 0.92483 0.92842 0.90895 0.92774 0.92580 0.92116 0.91735 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.83 37.16 0.37 -2.70 16 2 C 0.14 2.36 5.54 -4.04 -0.02 2.34 16 3 N -0.99 -20.01 2.59 -115.66 -0.30 -20.31 16 4 C 0.26 6.29 5.12 -5.20 -0.03 6.26 16 5 C -0.52 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.73 6.89 -52.49 -0.36 1.37 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 55.85 6.01 -107.50 -0.65 55.20 16 14 O -0.96 -23.27 15.82 -57.17 -0.90 -24.17 16 15 O -1.00 -20.93 15.81 -57.17 -0.90 -21.83 16 16 N -1.01 -15.60 2.77 -113.27 -0.31 -15.92 16 17 C 0.12 1.75 6.37 -3.71 -0.02 1.72 16 18 C -0.13 -1.60 5.02 -26.61 -0.13 -1.73 16 19 C -0.08 -0.77 2.00 -90.57 -0.18 -0.95 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 21 C -0.15 -1.34 8.49 37.16 0.32 -1.03 16 22 C -0.07 -0.79 0.55 -154.16 -0.08 -0.87 16 23 C -0.15 -1.76 7.36 37.16 0.27 -1.48 16 24 C -0.14 -1.22 8.09 37.16 0.30 -0.92 16 25 C 0.13 1.70 5.10 -3.49 -0.02 1.68 16 26 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 30 H 0.06 0.88 7.03 -51.93 -0.36 0.51 16 31 H 0.03 0.89 7.61 -51.93 -0.40 0.49 16 32 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 34 H 0.09 1.52 7.13 -51.93 -0.37 1.15 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.04 6.34 -51.93 -0.33 0.71 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.44 6.40 -51.93 -0.33 0.11 16 40 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 41 H 0.06 0.60 6.47 -51.93 -0.34 0.26 16 42 H 0.05 0.60 7.44 -51.93 -0.39 0.21 16 43 H 0.07 1.00 5.58 -51.93 -0.29 0.71 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -31.73 369.55 -9.72 -41.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.32 Total: -1.08 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 0.38 Total: -10.65 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.12 Total: -61.23 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.81 Total: -46.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 55.85 SS G_CDS: -0.65 Total: 55.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.73 -9.72 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336949495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.303 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds