Wall clock time and date at job start Tue Mar 31 2020 12:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46495 * 119.99753 * 275.00325 * 3 2 1 5 5 C 1.50698 * 109.47121 * 84.99977 * 4 3 2 6 6 H 1.07997 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99987 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47711 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47098 * 119.99996 * 9 7 5 12 12 H 1.48497 * 109.47023 * 239.99479 * 9 7 5 13 13 S 1.65602 * 120.00006 * 94.99676 * 3 2 1 14 14 O 1.42097 * 106.40599 * 203.54158 * 13 3 2 15 15 O 1.42097 * 106.40158 * 336.46648 * 13 3 2 16 16 N 1.65602 * 107.21332 * 90.00139 * 13 3 2 17 17 C 1.46930 * 120.62983 * 90.00372 * 16 13 3 18 18 C 1.53187 * 108.77549 * 233.58613 * 17 16 13 19 19 C 1.53043 * 109.31338 * 305.36215 * 18 17 16 20 20 H 1.09004 * 109.45789 * 301.35082 * 19 18 17 21 21 C 1.52999 * 109.46391 * 181.37464 * 19 18 17 22 22 C 1.53045 * 109.53769 * 61.36344 * 19 18 17 23 23 C 1.52999 * 109.49402 * 58.59093 * 22 19 18 24 24 C 1.52999 * 109.49652 * 178.65438 * 22 19 18 25 25 C 1.46926 * 120.63401 * 269.71871 * 16 13 3 26 26 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 29 29 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 30 30 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 31 31 H 1.09002 * 109.46665 * 204.99493 * 4 3 2 32 32 H 1.08998 * 109.47564 * 324.99734 * 4 3 2 33 33 H 0.97007 * 119.99956 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.58340 * 353.36900 * 17 16 13 35 35 H 1.08995 * 109.58777 * 113.79145 * 17 16 13 36 36 H 1.09002 * 109.50262 * 65.31142 * 18 17 16 37 37 H 1.08999 * 109.49912 * 185.37935 * 18 17 16 38 38 H 1.08996 * 109.47044 * 59.99578 * 21 19 18 39 39 H 1.08999 * 109.47106 * 180.02562 * 21 19 18 40 40 H 1.08996 * 109.46700 * 299.99757 * 21 19 18 41 41 H 1.09000 * 109.47315 * 60.00065 * 23 22 19 42 42 H 1.08996 * 109.46870 * 179.97438 * 23 22 19 43 43 H 1.08997 * 109.47247 * 300.00031 * 23 22 19 44 44 H 1.09003 * 109.47338 * 60.00056 * 24 22 19 45 45 H 1.08995 * 109.46950 * 180.02562 * 24 22 19 46 46 H 1.08998 * 109.47356 * 300.00148 * 24 22 19 47 47 H 1.09001 * 109.58690 * 246.20096 * 25 16 13 48 48 H 1.09001 * 109.58637 * 6.63232 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 0.8360 2.7288 -1.6355 6 1 -0.0228 2.5942 -0.9946 7 6 0.7225 3.4681 -2.7938 8 7 1.7684 3.6325 -3.5740 9 14 -0.9166 4.2362 -3.2548 10 1 -1.9275 3.9049 -2.2188 11 1 -0.7645 5.7107 -3.3449 12 1 -1.3611 3.7034 -4.5677 13 16 2.4122 2.1203 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4415 2.4448 16 7 4.0144 1.8137 1.7137 17 6 5.0517 2.7258 1.2129 18 6 6.0673 1.9180 0.3988 19 6 6.6020 0.7675 1.2548 20 1 7.0645 1.1701 2.1560 21 6 7.6421 -0.0212 0.4567 22 6 5.4483 -0.1595 1.6445 23 6 4.7763 -0.6978 0.3798 24 6 5.9889 -1.3273 2.4721 25 6 4.4254 0.6278 2.4775 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9079 2.8918 -1.1512 32 1 2.4689 1.4183 -2.0481 33 1 1.6887 4.1529 -4.3888 34 1 4.5951 3.4848 0.5776 35 1 5.5546 3.2040 2.0533 36 1 5.5827 1.5149 -0.4905 37 1 6.8926 2.5650 0.1017 38 1 8.4644 0.6385 0.1799 39 1 8.0226 -0.8408 1.0661 40 1 7.1797 -0.4234 -0.4447 41 1 5.5050 -1.2533 -0.2106 42 1 3.9551 -1.3583 0.6578 43 1 4.3904 0.1344 -0.2089 44 1 6.4666 -0.9435 3.3735 45 1 5.1670 -1.9875 2.7490 46 1 6.7183 -1.8832 1.8830 47 1 4.8784 0.9384 3.4190 48 1 3.5555 0.0020 2.6770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336949495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:46 Heat of formation + Delta-G solvation = -111.871806 kcal Electronic energy + Delta-G solvation = -28122.043544 eV Core-core repulsion = 24530.290739 eV Total energy + Delta-G solvation = -3591.752805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65334 -38.35670 -37.69057 -36.84191 -35.47869 -34.63693 -33.47061 -31.42807 -29.22087 -28.68781 -28.05024 -27.32185 -24.67376 -23.73057 -23.25045 -22.95123 -20.03662 -19.10061 -18.77476 -18.54781 -18.18838 -17.27015 -16.54647 -16.12387 -15.91304 -15.59542 -15.18317 -14.99667 -14.89362 -14.63653 -14.58613 -14.14424 -14.00248 -13.68375 -13.51919 -13.31429 -13.16659 -13.07821 -12.98303 -12.86691 -12.81180 -12.76638 -12.63949 -12.53136 -12.45497 -12.26817 -12.17312 -11.99245 -11.86521 -11.63947 -11.58882 -11.38446 -11.01177 -10.95992 -10.56393 -9.90000 -9.73617 -8.17704 -6.26820 -0.33515 1.36793 1.39757 1.50617 2.04084 2.40500 2.60089 3.13450 3.37529 3.63797 3.83198 3.86519 3.97454 4.09977 4.23082 4.34041 4.44651 4.49055 4.54094 4.57692 4.65740 4.70835 4.78045 4.83428 4.87328 4.93661 4.95391 4.97121 4.98879 5.15748 5.17256 5.18593 5.20943 5.23261 5.27733 5.33178 5.38713 5.45409 5.48065 5.58076 5.64242 5.71542 5.75917 5.77447 6.03570 6.16352 6.81161 7.40828 8.89993 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.005112 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.974312 B = 5476.110523 C = 5857.374489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.993 5.993 4 C 0.281 3.719 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.924 5.924 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.271 1.271 13 S 2.786 3.214 14 O -1.013 7.013 15 O -1.007 7.007 16 N -1.000 6.000 17 C 0.119 3.881 18 C -0.129 4.129 19 C -0.072 4.072 20 H 0.081 0.919 21 C -0.145 4.145 22 C -0.070 4.070 23 C -0.153 4.153 24 C -0.137 4.137 25 C 0.125 3.875 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -11.551 10.121 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.157 3.843 5 C -0.576 4.576 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.196 1.196 13 S 2.796 3.204 14 O -0.996 6.996 15 O -0.991 6.991 16 N -0.841 5.841 17 C -0.007 4.007 18 C -0.168 4.168 19 C -0.090 4.090 20 H 0.099 0.901 21 C -0.202 4.202 22 C -0.071 4.071 23 C -0.210 4.210 24 C -0.194 4.194 25 C 0.000 4.000 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.827 -10.956 10.518 19.250 hybrid contribution -0.931 0.786 -0.906 1.518 sum 10.897 -10.170 9.612 17.736 Atomic orbital electron populations 1.22248 0.96911 1.02455 1.01441 1.21226 0.94383 0.81091 1.02735 1.57674 1.79092 1.23791 1.22802 1.18505 0.95271 0.90147 0.80332 1.21883 0.97325 1.31825 1.06603 0.92906 1.25656 0.99870 0.96620 0.96419 1.70008 1.30767 1.41486 1.14146 0.85647 0.80321 0.78289 0.78300 1.19641 1.20753 1.19627 1.01580 0.73556 0.72494 0.72757 1.93545 1.86431 1.33439 1.86224 1.93490 1.71408 1.76323 1.57877 1.58057 1.23405 1.34935 1.67698 1.21497 0.89319 0.91189 0.98653 1.22013 0.98281 0.97961 0.98499 1.21040 0.94877 0.94378 0.98704 0.90094 1.21896 0.97967 1.00298 1.00050 1.20970 0.94851 0.95610 0.95711 1.22091 1.00697 1.00817 0.97400 1.21845 1.01353 0.96574 0.99668 1.21831 0.99074 0.84823 0.94291 0.92936 0.89562 0.94529 0.89831 0.89809 0.97028 0.95587 0.92587 0.92040 0.89468 0.92516 0.89709 0.92492 0.91060 0.93095 0.91351 0.92527 0.93472 0.91585 0.92288 0.91015 0.89685 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.03 9.83 71.98 0.71 -5.33 16 2 C 0.13 4.44 5.54 86.38 0.48 4.92 16 3 N -0.99 -41.01 2.59 -519.84 -1.35 -42.36 16 4 C 0.28 14.10 5.12 85.63 0.44 14.54 16 5 C -0.54 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.05 3.02 6.89 -2.91 -0.02 3.00 16 7 C 0.01 0.77 5.46 84.66 0.46 1.23 16 8 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 9 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 S 2.79 114.40 6.01 -56.49 -0.34 114.06 16 14 O -1.01 -51.03 15.82 -128.00 -2.03 -53.05 16 15 O -1.01 -42.33 15.81 -128.00 -2.02 -44.35 16 16 N -1.00 -30.58 2.77 -512.29 -1.42 -32.00 16 17 C 0.12 3.35 6.37 86.36 0.55 3.90 16 18 C -0.13 -2.99 5.02 30.67 0.15 -2.84 16 19 C -0.07 -1.27 2.00 -10.76 -0.02 -1.30 16 20 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 21 C -0.15 -2.18 8.49 71.98 0.61 -1.57 16 22 C -0.07 -1.31 0.55 -51.96 -0.03 -1.34 16 23 C -0.15 -3.30 7.36 71.98 0.53 -2.77 16 24 C -0.14 -1.85 8.09 71.98 0.58 -1.27 16 25 C 0.12 2.91 5.10 86.51 0.44 3.35 16 26 H 0.05 2.11 6.59 -2.39 -0.02 2.10 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.60 8.00 -2.39 -0.02 2.58 16 30 H 0.08 2.41 7.03 -2.38 -0.02 2.39 16 31 H 0.01 0.64 7.61 -2.39 -0.02 0.62 16 32 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 33 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 34 H 0.06 2.13 7.13 -2.39 -0.02 2.12 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.56 6.34 -2.39 -0.02 1.54 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.86 6.40 -2.39 -0.02 0.85 16 40 H 0.05 0.86 6.47 -2.39 -0.02 0.84 16 41 H 0.07 1.30 6.47 -2.39 -0.02 1.29 16 42 H 0.06 1.15 7.44 -2.39 -0.02 1.14 16 43 H 0.05 1.28 5.58 -2.39 -0.01 1.26 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.85 6.40 -2.39 -0.02 0.83 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 1.98 7.12 -2.39 -0.02 1.96 16 Total: -1.00 -69.94 369.55 1.20 -68.74 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.92 Total: 14.10 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.12 Total: -18.51 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -2.48 Total: -128.19 kcal Atomic # 8 Polarization: -93.35 SS G_CDS: -4.05 Total: -97.40 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 114.40 SS G_CDS: -0.34 Total: 114.06 kcal Total: -69.94 1.20 -68.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336949495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.134 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds