Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.46499 * 120.00054 * 277.97989 * 3 2 1 5 5 C 1.50699 * 109.47393 * 275.00182 * 4 3 2 6 6 H 1.08005 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00183 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47257 * 90.00104 * 9 7 5 11 11 H 1.48500 * 109.46859 * 210.00189 * 9 7 5 12 12 H 1.48504 * 109.46945 * 329.99843 * 9 7 5 13 13 S 1.65596 * 119.99881 * 97.98465 * 3 2 1 14 14 O 1.42106 * 106.40586 * 14.88719 * 13 3 2 15 15 O 1.42101 * 106.40518 * 147.80919 * 13 3 2 16 16 N 1.65600 * 107.22012 * 261.34869 * 13 3 2 17 17 C 1.46501 * 120.00052 * 62.68689 * 16 13 3 18 18 C 1.52995 * 109.47316 * 162.06633 * 17 16 13 19 19 C 1.52997 * 115.55390 * 39.55624 * 18 17 16 20 20 C 1.53002 * 109.47123 * 54.37635 * 19 18 17 21 21 C 1.53001 * 109.46738 * 65.44243 * 20 19 18 22 22 C 1.52996 * 109.47632 * 185.44079 * 20 19 18 23 23 C 1.53005 * 117.49782 * 253.85202 * 18 17 16 24 24 C 1.53002 * 60.00137 * 252.50858 * 23 18 17 25 25 H 1.09002 * 109.46714 * 292.76310 * 1 2 3 26 26 H 1.09001 * 109.47444 * 52.75616 * 1 2 3 27 27 H 1.09000 * 109.47437 * 172.76663 * 1 2 3 28 28 H 1.09000 * 109.46733 * 240.00655 * 2 1 3 29 29 H 1.08993 * 109.47132 * 120.00412 * 2 1 3 30 30 H 1.09002 * 109.47224 * 35.00384 * 4 3 2 31 31 H 1.09007 * 109.47003 * 155.00387 * 4 3 2 32 32 H 0.97006 * 119.99799 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99827 * 242.69474 * 16 13 3 34 34 H 1.09004 * 109.47013 * 282.06679 * 17 16 13 35 35 H 1.08996 * 109.47074 * 42.06140 * 17 16 13 36 36 H 1.08995 * 109.47772 * 174.38186 * 19 18 17 37 37 H 1.09004 * 109.47292 * 294.38604 * 19 18 17 38 38 H 1.08996 * 109.47166 * 305.44339 * 20 19 18 39 39 H 1.09003 * 109.47019 * 300.30655 * 21 20 19 40 40 H 1.08994 * 109.47471 * 60.30325 * 21 20 19 41 41 H 1.08997 * 109.47162 * 180.31110 * 21 20 19 42 42 H 1.09006 * 109.47017 * 59.99849 * 22 20 19 43 43 H 1.08991 * 109.47494 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.46840 * 300.00397 * 22 20 19 45 45 H 1.09003 * 117.49871 * 359.97438 * 23 18 17 46 46 H 1.09000 * 117.49820 * 145.01584 * 23 18 17 47 47 H 1.08997 * 117.49788 * 252.51555 * 24 23 18 48 48 H 1.08994 * 117.49685 * 107.48682 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0964 2.1305 -1.2564 5 6 3.4009 1.8221 -1.9451 6 1 4.1015 1.1360 -1.4923 7 6 3.6994 2.4147 -3.1536 8 7 2.8460 3.2497 -3.7052 9 14 5.3161 2.0318 -4.0076 10 1 5.1362 0.8640 -4.9071 11 1 5.7459 3.2088 -4.8045 12 1 6.3512 1.7181 -2.9901 13 16 2.4821 2.0954 1.4202 14 8 2.6275 1.0467 2.3681 15 8 3.5300 2.9975 1.0923 16 7 1.2124 3.0228 1.9401 17 6 -0.0652 2.3914 2.2793 18 6 -0.8981 3.3511 3.1314 19 6 -0.8370 4.8230 2.7183 20 6 -1.2101 4.9538 1.2402 21 6 -2.6727 4.5491 1.0458 22 6 -1.0183 6.4040 0.7921 23 6 -1.0264 3.0407 4.6241 24 6 -2.2222 2.8295 3.6933 25 1 -0.3633 0.3976 0.9477 26 1 -0.3634 0.6219 -0.8181 27 1 -0.3634 -1.0195 -0.1294 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.2673 1.8431 -1.9030 31 1 2.0401 3.1987 -1.0465 32 1 3.0563 3.6670 -4.5553 33 1 1.3147 3.9841 2.0199 34 1 -0.6076 2.1541 1.3641 35 1 0.1198 1.4751 2.8398 36 1 -1.5377 5.3994 3.3223 37 1 0.1733 5.2022 2.8728 38 1 -0.5705 4.3021 0.6450 39 1 -2.8105 3.5176 1.3701 40 1 -3.3127 5.2042 1.6367 41 1 -2.9370 4.6369 -0.0080 42 1 0.0237 6.6924 0.9307 43 1 -1.2846 6.4973 -0.2607 44 1 -1.6579 7.0558 1.3874 45 1 -0.5178 2.1525 4.9990 46 1 -1.0671 3.8852 5.3121 47 1 -3.0496 3.5351 3.7688 48 1 -2.4999 1.8026 3.4559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336951639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = -73.560652 kcal Electronic energy + Delta-G solvation = -27143.288816 eV Core-core repulsion = 23553.197307 eV Total energy + Delta-G solvation = -3590.091509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.30289 -36.59444 -36.01858 -35.12205 -35.03243 -33.99905 -32.63916 -29.97250 -27.60561 -27.15114 -26.60369 -25.97879 -23.14851 -22.49045 -21.71749 -20.53263 -19.16749 -18.66772 -17.35669 -16.70804 -16.29686 -16.01731 -15.40074 -15.27745 -14.84660 -14.35157 -14.27877 -13.78987 -13.66119 -13.44141 -13.30393 -13.03320 -12.87261 -12.25933 -12.08902 -12.02449 -11.93369 -11.64531 -11.62836 -11.58176 -11.46377 -11.38879 -11.30740 -11.15509 -10.97958 -10.86000 -10.78801 -10.51961 -10.45912 -10.34751 -10.11595 -9.97555 -9.82679 -9.70574 -9.12058 -8.42439 -8.05279 -6.04264 -4.07318 1.29449 3.32945 3.39383 3.45096 3.48868 3.70053 4.18570 4.46047 4.47365 4.62324 4.78159 4.79299 5.04266 5.09712 5.13358 5.25045 5.31531 5.37761 5.45036 5.52767 5.62761 5.66176 5.68291 5.73468 5.76151 5.78453 5.79521 5.88004 5.94977 5.96926 6.01451 6.02142 6.05219 6.17344 6.28652 6.33716 6.35827 6.46389 6.60204 6.66317 7.18440 7.29392 7.46683 7.66222 7.94050 8.23718 8.95145 9.57660 11.04218 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004709 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.547432 B = 5944.674995 C = 6677.242802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.261 3.739 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.780 3.220 14 O -1.001 7.001 15 O -0.966 6.966 16 N -1.130 6.130 17 C 0.158 3.842 18 C -0.127 4.127 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.175 4.175 24 C -0.167 4.167 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 0.802 12.517 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.139 3.861 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.788 3.212 14 O -0.985 6.985 15 O -0.949 6.949 16 N -0.890 5.890 17 C 0.032 3.968 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.202 4.202 22 C -0.206 4.206 23 C -0.212 4.212 24 C -0.205 4.205 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.349 0.618 12.773 17.777 hybrid contribution 0.484 0.370 -0.780 0.990 sum -11.865 0.988 11.993 16.899 Atomic orbital electron populations 1.22378 0.97405 1.01818 1.01937 1.21139 0.93152 0.83298 1.03418 1.57688 1.80797 1.21169 1.23638 1.18975 0.97543 0.90389 0.79206 1.21500 1.03346 1.26772 1.04809 0.92185 1.24914 0.97087 0.94885 0.97130 1.69921 1.35704 1.29592 1.18410 0.86534 0.83948 0.77753 0.79446 1.20686 1.21133 1.19713 1.01939 0.73239 0.73093 0.72942 1.93510 1.86019 1.57309 1.61656 1.93646 1.52103 1.65249 1.83926 1.56183 1.27835 1.20951 1.84039 1.20809 0.83616 0.94287 0.98129 1.21616 0.99546 0.96339 0.95325 1.21152 1.01524 0.92413 0.96276 1.21173 0.97620 0.97454 0.95780 1.21858 0.95646 1.01433 1.01255 1.21841 1.01632 0.95810 1.01270 1.23135 1.02157 1.03396 0.92489 1.23035 0.91490 1.02242 1.03737 0.93105 0.91755 0.92204 0.89920 0.90478 0.94692 0.94863 0.92790 0.75335 0.91014 0.90768 0.91716 0.91458 0.89905 0.92189 0.93365 0.92948 0.92541 0.92447 0.93230 0.88551 0.88898 0.88608 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.94 37.16 0.37 -2.05 16 2 C 0.12 2.00 6.39 -4.04 -0.03 1.97 16 3 N -0.99 -20.07 2.83 -115.66 -0.33 -20.40 16 4 C 0.26 6.37 5.09 -5.19 -0.03 6.34 16 5 C -0.52 -14.62 9.38 -34.44 -0.32 -14.94 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 S 2.78 54.94 6.03 -107.50 -0.65 54.29 16 14 O -1.00 -20.65 16.05 -57.17 -0.92 -21.57 16 15 O -0.97 -23.24 17.44 -57.17 -1.00 -24.24 16 16 N -1.13 -17.00 5.41 -10.61 -0.06 -17.05 16 17 C 0.16 1.98 4.35 -4.04 -0.02 1.96 16 18 C -0.13 -1.30 1.54 -154.51 -0.24 -1.54 16 19 C -0.08 -0.76 3.92 -26.73 -0.10 -0.87 16 20 C -0.10 -1.12 2.66 -90.62 -0.24 -1.36 16 21 C -0.14 -1.42 8.80 37.16 0.33 -1.09 16 22 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 23 C -0.17 -1.62 9.90 -26.73 -0.26 -1.89 16 24 C -0.17 -1.42 8.32 -26.73 -0.22 -1.64 16 25 H 0.05 0.62 5.21 -51.93 -0.27 0.35 16 26 H 0.06 0.94 7.80 -51.93 -0.40 0.54 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.46 8.13 -51.93 -0.42 1.04 16 29 H 0.08 1.27 6.80 -51.93 -0.35 0.92 16 30 H 0.04 0.87 7.76 -51.93 -0.40 0.46 16 31 H 0.03 0.86 7.84 -51.93 -0.41 0.45 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.41 5.74 6.51 -34.47 -0.22 5.51 16 34 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16 35 H 0.07 0.94 7.41 -51.93 -0.38 0.55 16 36 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.07 0.70 6.85 -51.93 -0.36 0.34 16 38 H 0.08 1.08 6.56 -51.93 -0.34 0.74 16 39 H 0.06 0.57 6.27 -51.93 -0.33 0.24 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.55 385.80 -10.35 -42.90 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.41 Total: 3.31 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.52 Total: -14.73 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.35 Total: -62.64 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.91 Total: -45.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.65 Total: 54.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.55 -10.35 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336951639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.660 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds