Wall clock time and date at job start Tue Mar 31 2020 12:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.46499 * 120.00054 * 277.97989 * 3 2 1 5 5 C 1.50699 * 109.47393 * 275.00182 * 4 3 2 6 6 H 1.08005 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00183 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47257 * 90.00104 * 9 7 5 11 11 H 1.48500 * 109.46859 * 210.00189 * 9 7 5 12 12 H 1.48504 * 109.46945 * 329.99843 * 9 7 5 13 13 S 1.65596 * 119.99881 * 97.98465 * 3 2 1 14 14 O 1.42106 * 106.40586 * 14.88719 * 13 3 2 15 15 O 1.42101 * 106.40518 * 147.80919 * 13 3 2 16 16 N 1.65600 * 107.22012 * 261.34869 * 13 3 2 17 17 C 1.46501 * 120.00052 * 62.68689 * 16 13 3 18 18 C 1.52995 * 109.47316 * 162.06633 * 17 16 13 19 19 C 1.52997 * 115.55390 * 39.55624 * 18 17 16 20 20 C 1.53002 * 109.47123 * 54.37635 * 19 18 17 21 21 C 1.53001 * 109.46738 * 65.44243 * 20 19 18 22 22 C 1.52996 * 109.47632 * 185.44079 * 20 19 18 23 23 C 1.53005 * 117.49782 * 253.85202 * 18 17 16 24 24 C 1.53002 * 60.00137 * 252.50858 * 23 18 17 25 25 H 1.09002 * 109.46714 * 292.76310 * 1 2 3 26 26 H 1.09001 * 109.47444 * 52.75616 * 1 2 3 27 27 H 1.09000 * 109.47437 * 172.76663 * 1 2 3 28 28 H 1.09000 * 109.46733 * 240.00655 * 2 1 3 29 29 H 1.08993 * 109.47132 * 120.00412 * 2 1 3 30 30 H 1.09002 * 109.47224 * 35.00384 * 4 3 2 31 31 H 1.09007 * 109.47003 * 155.00387 * 4 3 2 32 32 H 0.97006 * 119.99799 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99827 * 242.69474 * 16 13 3 34 34 H 1.09004 * 109.47013 * 282.06679 * 17 16 13 35 35 H 1.08996 * 109.47074 * 42.06140 * 17 16 13 36 36 H 1.08995 * 109.47772 * 174.38186 * 19 18 17 37 37 H 1.09004 * 109.47292 * 294.38604 * 19 18 17 38 38 H 1.08996 * 109.47166 * 305.44339 * 20 19 18 39 39 H 1.09003 * 109.47019 * 300.30655 * 21 20 19 40 40 H 1.08994 * 109.47471 * 60.30325 * 21 20 19 41 41 H 1.08997 * 109.47162 * 180.31110 * 21 20 19 42 42 H 1.09006 * 109.47017 * 59.99849 * 22 20 19 43 43 H 1.08991 * 109.47494 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.46840 * 300.00397 * 22 20 19 45 45 H 1.09003 * 117.49871 * 359.97438 * 23 18 17 46 46 H 1.09000 * 117.49820 * 145.01584 * 23 18 17 47 47 H 1.08997 * 117.49788 * 252.51555 * 24 23 18 48 48 H 1.08994 * 117.49685 * 107.48682 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0964 2.1305 -1.2564 5 6 3.4009 1.8221 -1.9451 6 1 4.1015 1.1360 -1.4923 7 6 3.6994 2.4147 -3.1536 8 7 2.8460 3.2497 -3.7052 9 14 5.3161 2.0318 -4.0076 10 1 5.1362 0.8640 -4.9071 11 1 5.7459 3.2088 -4.8045 12 1 6.3512 1.7181 -2.9901 13 16 2.4821 2.0954 1.4202 14 8 2.6275 1.0467 2.3681 15 8 3.5300 2.9975 1.0923 16 7 1.2124 3.0228 1.9401 17 6 -0.0652 2.3914 2.2793 18 6 -0.8981 3.3511 3.1314 19 6 -0.8370 4.8230 2.7183 20 6 -1.2101 4.9538 1.2402 21 6 -2.6727 4.5491 1.0458 22 6 -1.0183 6.4040 0.7921 23 6 -1.0264 3.0407 4.6241 24 6 -2.2222 2.8295 3.6933 25 1 -0.3633 0.3976 0.9477 26 1 -0.3634 0.6219 -0.8181 27 1 -0.3634 -1.0195 -0.1294 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.2673 1.8431 -1.9030 31 1 2.0401 3.1987 -1.0465 32 1 3.0563 3.6670 -4.5553 33 1 1.3147 3.9841 2.0199 34 1 -0.6076 2.1541 1.3641 35 1 0.1198 1.4751 2.8398 36 1 -1.5377 5.3994 3.3223 37 1 0.1733 5.2022 2.8728 38 1 -0.5705 4.3021 0.6450 39 1 -2.8105 3.5176 1.3701 40 1 -3.3127 5.2042 1.6367 41 1 -2.9370 4.6369 -0.0080 42 1 0.0237 6.6924 0.9307 43 1 -1.2846 6.4973 -0.2607 44 1 -1.6579 7.0558 1.3874 45 1 -0.5178 2.1525 4.9990 46 1 -1.0671 3.8852 5.3121 47 1 -3.0496 3.5351 3.7688 48 1 -2.4999 1.8026 3.4559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336951639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:47 Heat of formation + Delta-G solvation = -94.646133 kcal Electronic energy + Delta-G solvation = -27144.203151 eV Core-core repulsion = 23553.197307 eV Total energy + Delta-G solvation = -3591.005844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13739 -38.28046 -37.66983 -36.84969 -35.85947 -35.16366 -34.68649 -31.52131 -28.51587 -28.40789 -27.97057 -27.03654 -24.96389 -23.31405 -23.12795 -21.37573 -20.29182 -19.97377 -19.01139 -18.33202 -18.15044 -17.36368 -16.87586 -16.35414 -16.19881 -15.78974 -15.23935 -15.10538 -14.75668 -14.69582 -14.56800 -14.30226 -14.01719 -13.79171 -13.60157 -13.33397 -13.15055 -13.12077 -13.03467 -12.98449 -12.74914 -12.71594 -12.65426 -12.30990 -12.24870 -12.18626 -12.16589 -11.99067 -11.74303 -11.68987 -11.56272 -11.35221 -10.92771 -10.71475 -10.57248 -10.19817 -9.78844 -8.18940 -6.29570 -0.28932 1.38353 1.40758 1.51325 2.04045 2.41219 2.62312 2.92777 3.12029 3.46696 3.68588 3.84400 3.93761 4.00660 4.07295 4.21535 4.28015 4.38443 4.41995 4.48488 4.51369 4.68326 4.76655 4.80443 4.86899 4.88524 4.93215 5.00829 5.03917 5.07134 5.12724 5.15605 5.16300 5.18773 5.23191 5.26598 5.36708 5.43096 5.46279 5.53399 5.55778 5.61032 5.73463 5.91623 6.10950 6.17503 6.78277 7.38809 8.88283 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004709 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.547432 B = 5944.674995 C = 6677.242802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.995 5.995 4 C 0.279 3.721 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.277 1.277 13 S 2.794 3.206 14 O -1.010 7.010 15 O -1.015 7.015 16 N -1.116 6.116 17 C 0.152 3.848 18 C -0.141 4.141 19 C -0.072 4.072 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.175 4.175 24 C -0.149 4.149 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.013 0.987 32 H 0.266 0.734 33 H 0.418 0.582 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 0.345 13.572 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.836 5.836 4 C 0.156 3.844 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.202 1.202 13 S 2.803 3.197 14 O -0.993 6.993 15 O -0.998 6.998 16 N -0.880 5.880 17 C 0.026 3.974 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.198 4.198 22 C -0.206 4.206 23 C -0.212 4.212 24 C -0.187 4.187 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.122 0.878 47 H 0.129 0.871 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.980 0.136 13.834 19.668 hybrid contribution 0.942 0.501 -1.044 1.492 sum -13.038 0.636 12.790 18.275 Atomic orbital electron populations 1.22306 0.94486 1.03501 1.02407 1.21386 0.95654 0.81492 1.03294 1.57560 1.81306 1.22384 1.22364 1.18497 0.95878 0.89643 0.80400 1.21835 1.04529 1.26731 1.05426 0.93268 1.25678 1.00238 0.94773 0.97845 1.70005 1.37201 1.30221 1.18844 0.85638 0.79918 0.78206 0.78440 1.19093 1.20410 1.20172 1.01258 0.73221 0.72600 0.72649 1.93491 1.86451 1.57782 1.61575 1.93574 1.55168 1.66484 1.84615 1.55766 1.27967 1.20927 1.83319 1.21042 0.82469 0.94949 0.98930 1.21517 1.01037 0.95848 0.95844 1.21115 1.01533 0.92630 0.95677 1.21150 0.98085 0.96795 0.96146 1.21822 0.94795 1.02101 1.01051 1.21847 1.01403 0.96320 1.01041 1.23202 1.02523 1.03631 0.91833 1.23137 0.90936 1.02964 1.01616 0.91497 0.92860 0.89441 0.90947 0.89700 0.95284 0.96892 0.92476 0.74560 0.90660 0.90593 0.89858 0.92332 0.92637 0.91647 0.91777 0.93828 0.93549 0.93426 0.91385 0.89003 0.87820 0.87080 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 9.94 71.98 0.72 -3.65 16 2 C 0.11 3.64 6.39 86.38 0.55 4.19 16 3 N -0.99 -41.02 2.83 -519.84 -1.47 -42.49 16 4 C 0.28 14.06 5.09 85.63 0.44 14.50 16 5 C -0.55 -31.12 9.38 25.60 0.24 -30.88 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.80 5.46 84.65 0.46 1.26 16 8 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 S 2.79 112.25 6.03 -56.49 -0.34 111.91 16 14 O -1.01 -41.42 16.05 -128.00 -2.05 -43.47 16 15 O -1.01 -50.54 17.44 -128.00 -2.23 -52.77 16 16 N -1.12 -33.62 5.41 -187.50 -1.01 -34.63 16 17 C 0.15 3.60 4.35 86.38 0.38 3.97 16 18 C -0.14 -2.59 1.54 -52.18 -0.08 -2.67 16 19 C -0.07 -1.32 3.92 30.59 0.12 -1.20 16 20 C -0.10 -2.18 2.66 -10.79 -0.03 -2.21 16 21 C -0.14 -2.49 8.80 71.98 0.63 -1.86 16 22 C -0.15 -3.16 9.19 71.98 0.66 -2.49 16 23 C -0.17 -2.78 9.90 30.60 0.30 -2.47 16 24 C -0.15 -2.02 8.32 30.60 0.25 -1.77 16 25 H 0.07 1.50 5.21 -2.39 -0.01 1.49 16 26 H 0.05 1.51 7.80 -2.39 -0.02 1.49 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.58 8.13 -2.39 -0.02 2.56 16 29 H 0.08 2.74 6.80 -2.39 -0.02 2.72 16 30 H 0.03 1.48 7.76 -2.39 -0.02 1.47 16 31 H 0.01 0.71 7.84 -2.38 -0.02 0.69 16 32 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 33 H 0.42 11.83 6.51 -96.74 -0.63 11.20 16 34 H 0.08 1.74 6.23 -2.38 -0.01 1.72 16 35 H 0.08 1.79 7.41 -2.39 -0.02 1.77 16 36 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.06 1.16 6.85 -2.39 -0.02 1.15 16 38 H 0.06 1.47 6.56 -2.39 -0.02 1.46 16 39 H 0.06 1.08 6.27 -2.39 -0.01 1.06 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 46 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.37 385.80 0.15 -70.23 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.30 Total: 23.11 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 4.65 Total: -25.28 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -2.20 Total: -130.88 kcal Atomic # 8 Polarization: -91.96 SS G_CDS: -4.29 Total: -96.24 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 112.25 SS G_CDS: -0.34 Total: 111.91 kcal Total: -70.37 0.15 -70.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336951639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.419 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds