Wall clock time and date at job start Tue Mar 31 2020 12:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.46987 * 2 1 4 4 C 1.46498 * 120.00318 * 85.00103 * 3 2 1 5 5 C 1.50695 * 109.46983 * 84.99842 * 4 3 2 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99661 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65605 * 119.99893 * 264.99789 * 3 2 1 14 14 O 1.42102 * 106.39986 * 23.54301 * 13 3 2 15 15 O 1.42096 * 106.40331 * 156.46011 * 13 3 2 16 16 N 1.65599 * 107.22017 * 270.00432 * 13 3 2 17 17 C 1.46496 * 120.00244 * 64.99535 * 16 13 3 18 18 H 1.08998 * 109.47161 * 335.00646 * 17 16 13 19 19 C 1.52998 * 109.47003 * 95.00130 * 17 16 13 20 20 C 1.52999 * 109.47121 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47319 * 300.00084 * 20 19 17 22 22 C 1.53003 * 109.46852 * 59.99683 * 21 20 19 23 23 C 1.52999 * 109.47417 * 300.00257 * 22 21 20 24 24 C 1.52997 * 109.46870 * 299.99845 * 23 22 21 25 25 C 1.53000 * 109.46946 * 179.97438 * 23 22 21 26 26 H 1.08999 * 109.47475 * 300.00450 * 1 2 3 27 27 H 1.09000 * 109.47448 * 60.00307 * 1 2 3 28 28 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47102 * 239.99836 * 2 1 3 30 30 H 1.09004 * 109.47007 * 119.99924 * 2 1 3 31 31 H 1.09002 * 109.46847 * 324.99541 * 4 3 2 32 32 H 1.09000 * 109.46849 * 204.99920 * 4 3 2 33 33 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 34 34 H 0.97001 * 119.99676 * 245.00414 * 16 13 3 35 35 H 1.08990 * 109.47570 * 300.00335 * 19 17 16 36 36 H 1.09008 * 109.46685 * 60.00271 * 19 17 16 37 37 H 1.08998 * 109.47141 * 60.00456 * 20 19 17 38 38 H 1.09005 * 109.47102 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.47357 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46846 * 300.00025 * 21 20 19 41 41 H 1.09008 * 109.46629 * 60.00181 * 22 21 20 42 42 H 1.08995 * 109.46948 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46839 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47488 * 299.99745 * 24 23 22 45 45 H 1.08997 * 109.47147 * 60.00372 * 24 23 22 46 46 H 1.08998 * 109.47105 * 299.99905 * 25 23 22 47 47 H 1.08999 * 109.46795 * 60.00097 * 25 23 22 48 48 H 1.08999 * 109.46939 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4947 1.7888 1.8822 6 1 4.1720 1.1111 1.3839 7 6 3.8524 2.3607 3.0848 8 7 3.0275 3.1857 3.6919 9 14 5.5088 1.9637 3.8517 10 1 6.5227 2.9366 3.3712 11 1 5.9178 0.5900 3.4631 12 1 5.4028 2.0489 5.3305 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5185 -1.2000 16 7 4.0143 1.8136 -1.7138 17 6 4.4656 0.4413 -1.9569 18 1 3.7681 -0.2577 -1.4954 19 6 4.5242 0.1830 -3.4638 20 6 4.9949 -1.2505 -3.7176 21 6 6.3866 -1.4450 -3.1123 22 6 6.3280 -1.1867 -1.6054 23 6 5.8573 0.2467 -1.3516 24 6 6.8369 1.2274 -1.9993 25 6 5.7981 0.5047 0.1554 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3616 1.8098 1.9452 32 1 2.0921 3.1803 1.0754 33 1 2.1675 3.3921 3.2934 34 1 4.6540 2.5428 -1.7198 35 1 3.5328 0.3212 -3.8949 36 1 5.2218 0.8821 -3.9253 37 1 4.2971 -1.9491 -3.2562 38 1 5.0371 -1.4343 -4.7912 39 1 6.7222 -2.4661 -3.2936 40 1 7.0845 -0.7464 -3.5739 41 1 5.6301 -1.8855 -1.1440 42 1 7.3193 -1.3258 -1.1742 43 1 6.5013 2.2486 -1.8189 44 1 7.8282 1.0888 -1.5681 45 1 6.8786 1.0434 -3.0728 46 1 5.1000 -0.1940 0.6164 47 1 6.7894 0.3660 0.5869 48 1 5.4623 1.5258 0.3362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336955786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:11 Heat of formation + Delta-G solvation = -104.068963 kcal Electronic energy + Delta-G solvation = -28284.522373 eV Core-core repulsion = 24693.107925 eV Total energy + Delta-G solvation = -3591.414449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80462 -36.66819 -36.16137 -35.24034 -34.05109 -33.04754 -32.81289 -29.87871 -29.02099 -27.27331 -26.33768 -25.74889 -23.13648 -22.37751 -21.80440 -21.00640 -19.07886 -18.46440 -17.27124 -16.93497 -16.54406 -16.26163 -15.13302 -14.85597 -14.47510 -14.33465 -13.92526 -13.77707 -13.50887 -13.43908 -13.07687 -12.97377 -12.85510 -12.44857 -11.95047 -11.86531 -11.79896 -11.74611 -11.66668 -11.49429 -11.45062 -11.38241 -11.26982 -11.14109 -11.00098 -10.85340 -10.65276 -10.52899 -10.44282 -10.23179 -10.16095 -9.95300 -9.90132 -9.28877 -8.97291 -8.40550 -7.87808 -6.38313 -4.12896 1.28905 3.37275 3.39615 3.48193 3.54730 4.13055 4.47723 4.64988 4.73788 4.81479 4.97511 5.08495 5.20138 5.24563 5.34058 5.37571 5.42197 5.45748 5.52562 5.67495 5.70127 5.73948 5.78053 5.82161 5.89121 6.01497 6.03847 6.09007 6.09588 6.19326 6.22099 6.23582 6.29012 6.32721 6.38739 6.54717 6.55547 6.60529 6.68707 6.93034 7.06249 7.23567 7.37647 7.58300 8.03604 8.47913 8.78737 9.58979 10.97707 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.007292 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.738271 B = 3838.654856 C = 5223.757014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.986 5.986 4 C 0.236 3.764 5 C -0.631 4.631 6 H 0.084 0.916 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 1.061 2.939 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.286 1.286 13 S 2.786 3.214 14 O -0.998 6.998 15 O -0.985 6.985 16 N -1.118 6.118 17 C 0.174 3.826 18 H 0.079 0.921 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.067 4.067 24 C -0.144 4.144 25 C -0.152 4.152 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.270 0.730 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -9.675 -11.951 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.828 5.828 4 C 0.113 3.887 5 C -0.670 4.670 6 H 0.102 0.898 7 C -0.183 4.183 8 N -0.546 5.546 9 Si 0.889 3.111 10 H -0.214 1.214 11 H -0.211 1.211 12 H -0.212 1.212 13 S 2.794 3.206 14 O -0.981 6.981 15 O -0.969 6.969 16 N -0.876 5.876 17 C 0.066 3.934 18 H 0.097 0.903 19 C -0.180 4.180 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.145 4.145 23 C -0.069 4.069 24 C -0.201 4.201 25 C -0.208 4.208 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.734 -8.982 -11.173 15.439 hybrid contribution -0.433 -0.210 -0.878 1.001 sum 5.301 -9.191 -12.051 16.057 Atomic orbital electron populations 1.22202 0.96935 1.01435 1.02318 1.21022 0.93711 0.82970 1.02009 1.57546 1.78733 1.22718 1.23757 1.19232 0.97863 0.91696 0.79872 1.22942 1.03090 1.31822 1.09185 0.89801 1.25662 1.04056 0.93989 0.94558 1.70743 1.09960 1.33003 1.40932 0.83672 0.74961 0.75957 0.76480 1.21400 1.21122 1.21180 1.01677 0.73003 0.72932 0.72953 1.93542 1.71022 1.76395 1.57180 1.93577 1.85972 1.31357 1.86014 1.56055 1.28940 1.14368 1.88259 1.20622 0.96075 0.82189 0.94517 0.90324 1.22150 1.02519 0.96822 0.96514 1.21490 0.96791 0.96744 1.00367 1.21619 0.97276 1.01039 0.96048 1.21602 1.01373 0.95789 0.95783 1.20776 0.94069 0.95192 0.96828 1.21960 0.98677 0.99054 1.00447 1.22277 1.01183 1.04743 0.92642 0.92252 0.92593 0.92288 0.91920 0.90243 0.95682 0.94462 0.91969 0.75394 0.90718 0.91305 0.91918 0.92057 0.92336 0.91729 0.91804 0.91770 0.92538 0.92669 0.92225 0.91818 0.93494 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.13 2.20 5.77 -4.05 -0.02 2.17 16 3 N -0.99 -19.71 2.82 -115.67 -0.33 -20.03 16 4 C 0.24 5.66 4.75 -5.20 -0.02 5.63 16 5 C -0.63 -15.75 8.97 -34.44 -0.31 -16.06 16 6 H 0.08 1.90 3.23 -52.49 -0.17 1.74 16 7 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 8 N -0.91 -26.51 13.65 55.43 0.76 -25.76 16 9 Si 1.06 23.89 29.90 -169.99 -5.08 18.80 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.79 54.55 6.01 -107.50 -0.65 53.90 16 14 O -1.00 -19.91 16.37 -57.17 -0.94 -20.84 16 15 O -0.98 -22.98 16.69 -57.17 -0.95 -23.93 16 16 N -1.12 -17.97 4.73 -4.89 -0.02 -17.99 16 17 C 0.17 2.41 1.81 -67.93 -0.12 2.29 16 18 H 0.08 1.13 6.22 -51.93 -0.32 0.81 16 19 C -0.14 -1.73 5.25 -26.73 -0.14 -1.87 16 20 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 21 C -0.12 -1.15 5.65 -26.73 -0.15 -1.31 16 22 C -0.11 -1.16 4.73 -26.73 -0.13 -1.29 16 23 C -0.07 -0.86 0.59 -154.51 -0.09 -0.95 16 24 C -0.14 -1.66 7.60 37.16 0.28 -1.38 16 25 C -0.15 -2.37 6.84 37.16 0.25 -2.12 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.95 6.20 -51.93 -0.32 0.63 16 30 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.03 0.62 7.98 -51.93 -0.41 0.21 16 32 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 33 H 0.27 7.87 7.22 -40.82 -0.29 7.58 16 34 H 0.41 6.21 7.03 -34.47 -0.24 5.97 16 35 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 36 H 0.07 0.79 6.43 -51.92 -0.33 0.45 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 41 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 46 H 0.06 1.06 7.09 -51.93 -0.37 0.69 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.57 6.04 -51.93 -0.31 1.26 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -30.77 364.20 -9.95 -40.72 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.90 Total: 7.60 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.33 Total: -17.97 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.41 Total: -63.78 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.89 Total: -44.77 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.08 Total: 18.80 kcal Atomic # 16 Polarization: 54.55 SS G_CDS: -0.65 Total: 53.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.77 -9.95 -40.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336955786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.349 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds