Wall clock time and date at job start Tue Mar 31 2020 12:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.46987 * 2 1 4 4 C 1.46498 * 120.00318 * 85.00103 * 3 2 1 5 5 C 1.50695 * 109.46983 * 84.99842 * 4 3 2 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99661 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65605 * 119.99893 * 264.99789 * 3 2 1 14 14 O 1.42102 * 106.39986 * 23.54301 * 13 3 2 15 15 O 1.42096 * 106.40331 * 156.46011 * 13 3 2 16 16 N 1.65599 * 107.22017 * 270.00432 * 13 3 2 17 17 C 1.46496 * 120.00244 * 64.99535 * 16 13 3 18 18 H 1.08998 * 109.47161 * 335.00646 * 17 16 13 19 19 C 1.52998 * 109.47003 * 95.00130 * 17 16 13 20 20 C 1.52999 * 109.47121 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47319 * 300.00084 * 20 19 17 22 22 C 1.53003 * 109.46852 * 59.99683 * 21 20 19 23 23 C 1.52999 * 109.47417 * 300.00257 * 22 21 20 24 24 C 1.52997 * 109.46870 * 299.99845 * 23 22 21 25 25 C 1.53000 * 109.46946 * 179.97438 * 23 22 21 26 26 H 1.08999 * 109.47475 * 300.00450 * 1 2 3 27 27 H 1.09000 * 109.47448 * 60.00307 * 1 2 3 28 28 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47102 * 239.99836 * 2 1 3 30 30 H 1.09004 * 109.47007 * 119.99924 * 2 1 3 31 31 H 1.09002 * 109.46847 * 324.99541 * 4 3 2 32 32 H 1.09000 * 109.46849 * 204.99920 * 4 3 2 33 33 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 34 34 H 0.97001 * 119.99676 * 245.00414 * 16 13 3 35 35 H 1.08990 * 109.47570 * 300.00335 * 19 17 16 36 36 H 1.09008 * 109.46685 * 60.00271 * 19 17 16 37 37 H 1.08998 * 109.47141 * 60.00456 * 20 19 17 38 38 H 1.09005 * 109.47102 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.47357 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46846 * 300.00025 * 21 20 19 41 41 H 1.09008 * 109.46629 * 60.00181 * 22 21 20 42 42 H 1.08995 * 109.46948 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46839 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47488 * 299.99745 * 24 23 22 45 45 H 1.08997 * 109.47147 * 60.00372 * 24 23 22 46 46 H 1.08998 * 109.47105 * 299.99905 * 25 23 22 47 47 H 1.08999 * 109.46795 * 60.00097 * 25 23 22 48 48 H 1.08999 * 109.46939 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4947 1.7888 1.8822 6 1 4.1720 1.1111 1.3839 7 6 3.8524 2.3607 3.0848 8 7 3.0275 3.1857 3.6919 9 14 5.5088 1.9637 3.8517 10 1 6.5227 2.9366 3.3712 11 1 5.9178 0.5900 3.4631 12 1 5.4028 2.0489 5.3305 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5185 -1.2000 16 7 4.0143 1.8136 -1.7138 17 6 4.4656 0.4413 -1.9569 18 1 3.7681 -0.2577 -1.4954 19 6 4.5242 0.1830 -3.4638 20 6 4.9949 -1.2505 -3.7176 21 6 6.3866 -1.4450 -3.1123 22 6 6.3280 -1.1867 -1.6054 23 6 5.8573 0.2467 -1.3516 24 6 6.8369 1.2274 -1.9993 25 6 5.7981 0.5047 0.1554 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3616 1.8098 1.9452 32 1 2.0921 3.1803 1.0754 33 1 2.1675 3.3921 3.2934 34 1 4.6540 2.5428 -1.7198 35 1 3.5328 0.3212 -3.8949 36 1 5.2218 0.8821 -3.9253 37 1 4.2971 -1.9491 -3.2562 38 1 5.0371 -1.4343 -4.7912 39 1 6.7222 -2.4661 -3.2936 40 1 7.0845 -0.7464 -3.5739 41 1 5.6301 -1.8855 -1.1440 42 1 7.3193 -1.3258 -1.1742 43 1 6.5013 2.2486 -1.8189 44 1 7.8282 1.0888 -1.5681 45 1 6.8786 1.0434 -3.0728 46 1 5.1000 -0.1940 0.6164 47 1 6.7894 0.3660 0.5869 48 1 5.4623 1.5258 0.3362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336955786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:10 Heat of formation + Delta-G solvation = -124.306238 kcal Electronic energy + Delta-G solvation = -28285.399927 eV Core-core repulsion = 24693.107925 eV Total energy + Delta-G solvation = -3592.292003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80958 -38.34383 -37.82770 -36.93377 -35.15753 -34.87621 -33.94603 -31.45365 -30.02734 -28.41591 -27.95591 -26.92754 -24.94502 -23.42969 -23.31921 -21.91449 -20.56571 -19.59170 -19.01206 -18.52161 -18.20543 -17.64491 -16.55603 -15.96900 -15.71665 -15.55710 -15.43951 -15.19180 -14.92067 -14.69766 -14.47658 -14.18123 -14.03793 -13.74672 -13.71814 -13.31423 -13.22412 -13.10355 -13.04489 -12.95299 -12.79669 -12.66726 -12.63639 -12.32133 -12.26742 -12.22982 -12.01846 -11.90157 -11.78491 -11.71949 -11.24169 -11.17640 -11.05371 -10.76555 -10.48749 -10.19336 -9.66060 -8.51203 -6.26203 -0.29955 1.54659 1.62315 1.77169 1.96066 2.58355 2.61366 3.25839 3.39827 3.63632 3.77753 3.88096 3.92602 4.20414 4.25063 4.31399 4.35626 4.38962 4.47496 4.52107 4.60615 4.62546 4.76933 4.84047 4.88014 4.91328 4.93762 4.98521 5.04680 5.09446 5.13625 5.19549 5.26156 5.29216 5.29869 5.32639 5.38664 5.44246 5.47050 5.55802 5.66890 5.73837 5.77530 6.00598 6.16949 6.44257 6.65337 7.54727 8.83804 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.007292 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.738271 B = 3838.654856 C = 5223.757014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.990 5.990 4 C 0.248 3.752 5 C -0.622 4.622 6 H 0.108 0.892 7 C -0.031 4.031 8 N -0.947 5.947 9 Si 1.099 2.901 10 H -0.278 1.278 11 H -0.254 1.254 12 H -0.295 1.295 13 S 2.797 3.203 14 O -1.000 7.000 15 O -1.027 7.027 16 N -1.109 6.109 17 C 0.165 3.835 18 H 0.073 0.927 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.061 4.061 24 C -0.145 4.145 25 C -0.152 4.152 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.011 0.989 32 H 0.004 0.996 33 H 0.254 0.746 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 -12.288 -13.553 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.830 5.830 4 C 0.124 3.876 5 C -0.661 4.661 6 H 0.125 0.875 7 C -0.229 4.229 8 N -0.585 5.585 9 Si 0.922 3.078 10 H -0.204 1.204 11 H -0.177 1.177 12 H -0.221 1.221 13 S 2.806 3.194 14 O -0.984 6.984 15 O -1.012 7.012 16 N -0.871 5.871 17 C 0.058 3.942 18 H 0.091 0.909 19 C -0.177 4.177 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.063 4.063 24 C -0.202 4.202 25 C -0.209 4.209 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.253 0.747 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.966 -11.626 -12.812 19.046 hybrid contribution -1.166 0.566 -0.459 1.375 sum 6.800 -11.059 -13.270 18.565 Atomic orbital electron populations 1.22194 0.95942 1.03336 1.01216 1.21291 0.94669 0.81329 1.03123 1.57458 1.79490 1.23815 1.22245 1.18826 0.97284 0.90292 0.81194 1.23382 1.03386 1.30752 1.08563 0.87457 1.27019 1.06526 0.93602 0.95794 1.70873 1.10123 1.35565 1.41938 0.83206 0.71717 0.77677 0.75213 1.20398 1.17739 1.22122 1.01171 0.73760 0.71791 0.72687 1.93532 1.71785 1.76125 1.56932 1.93518 1.86952 1.34186 1.86515 1.55803 1.27583 1.15875 1.87839 1.20920 0.96748 0.80412 0.96088 0.90869 1.22123 1.02017 0.98823 0.94764 1.21505 0.97291 0.94882 1.01522 1.21595 0.96794 1.02373 0.94657 1.21598 1.01770 0.93853 0.97124 1.20731 0.93598 0.97211 0.94727 1.21979 0.98711 0.98016 1.01491 1.22203 1.01291 1.02412 0.95005 0.93599 0.93428 0.88901 0.89657 0.90159 0.97113 0.97763 0.93656 0.74741 0.92448 0.90319 0.91973 0.90507 0.90566 0.90930 0.91992 0.90682 0.93603 0.91595 0.90575 0.93139 0.92310 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.12 4.02 5.77 86.38 0.50 4.52 16 3 N -0.99 -40.09 2.82 -519.86 -1.47 -41.56 16 4 C 0.25 12.35 4.75 85.63 0.41 12.76 16 5 C -0.62 -31.41 8.97 25.60 0.23 -31.18 16 6 H 0.11 4.82 3.23 -2.91 -0.01 4.81 16 7 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 8 N -0.95 -57.01 13.65 21.45 0.29 -56.72 16 9 Si 1.10 47.60 29.90 68.60 2.05 49.65 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 S 2.80 110.77 6.01 -56.49 -0.34 110.44 16 14 O -1.00 -39.52 16.37 -128.00 -2.10 -41.61 16 15 O -1.03 -49.66 16.69 -128.00 -2.14 -51.80 16 16 N -1.11 -35.07 4.73 -169.40 -0.80 -35.87 16 17 C 0.16 4.28 1.81 44.99 0.08 4.36 16 18 H 0.07 1.97 6.22 -2.39 -0.01 1.96 16 19 C -0.14 -3.04 5.25 30.59 0.16 -2.88 16 20 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 21 C -0.12 -1.70 5.65 30.60 0.17 -1.52 16 22 C -0.11 -1.89 4.73 30.59 0.14 -1.74 16 23 C -0.06 -1.40 0.59 -52.18 -0.03 -1.43 16 24 C -0.14 -2.91 7.60 71.98 0.55 -2.37 16 25 C -0.15 -4.45 6.84 71.98 0.49 -3.96 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.44 6.20 -2.39 -0.01 2.43 16 30 H 0.08 2.65 8.11 -2.38 -0.02 2.63 16 31 H 0.01 0.57 7.98 -2.39 -0.02 0.55 16 32 H 0.00 0.25 6.78 -2.39 -0.02 0.23 16 33 H 0.25 15.63 7.22 -92.71 -0.67 14.96 16 34 H 0.42 12.47 7.03 -96.75 -0.68 11.79 16 35 H 0.06 1.48 7.64 -2.39 -0.02 1.46 16 36 H 0.08 1.57 6.43 -2.38 -0.02 1.55 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.97 6.43 -2.39 -0.02 0.96 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.01 6.51 -2.39 -0.02 1.00 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.28 4.81 -2.39 -0.01 1.27 16 46 H 0.05 1.58 7.09 -2.39 -0.02 1.57 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.02 6.04 -2.39 -0.01 2.00 16 Total: -1.00 -68.06 364.20 -0.04 -68.10 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.38 Total: 30.18 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.08 Total: -30.80 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -1.98 Total: -134.15 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -4.23 Total: -93.41 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.05 Total: 49.65 kcal Atomic # 16 Polarization: 110.77 SS G_CDS: -0.34 Total: 110.44 kcal Total: -68.06 -0.04 -68.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336955786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.209 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds