Wall clock time and date at job start Tue Mar 31 2020 12:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.47042 * 2 1 4 4 C 1.46502 * 119.99844 * 276.49193 * 3 2 1 5 5 C 1.50697 * 109.46834 * 275.00064 * 4 3 2 6 6 H 1.07997 * 120.00614 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99725 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47354 * 90.00026 * 9 7 5 11 11 H 1.48502 * 109.47322 * 210.00204 * 9 7 5 12 12 H 1.48503 * 109.47304 * 329.99960 * 9 7 5 13 13 S 1.65602 * 119.99963 * 96.49186 * 3 2 1 14 14 O 1.42099 * 106.40050 * 162.37326 * 13 3 2 15 15 O 1.42105 * 106.40142 * 29.45794 * 13 3 2 16 16 N 1.65601 * 107.21846 * 275.91792 * 13 3 2 17 17 C 1.46498 * 119.99738 * 295.64072 * 16 13 3 18 18 H 1.09005 * 109.47184 * 24.03072 * 17 16 13 19 19 C 1.52997 * 109.47455 * 264.02965 * 17 16 13 20 20 C 1.53007 * 109.47048 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.46990 * 60.00305 * 20 19 17 22 22 H 1.08995 * 109.47373 * 59.99660 * 21 20 19 23 23 C 1.52999 * 109.46784 * 179.97438 * 21 20 19 24 24 C 1.53000 * 109.46756 * 299.99448 * 21 20 19 25 25 C 1.53000 * 109.46813 * 144.02892 * 17 16 13 26 26 H 1.09003 * 109.47409 * 299.99939 * 25 17 16 27 27 C 1.53001 * 109.47332 * 60.00097 * 25 17 16 28 28 H 1.08996 * 109.46888 * 184.71816 * 1 2 3 29 29 H 1.09005 * 109.46889 * 304.71523 * 1 2 3 30 30 H 1.08997 * 109.47256 * 64.71103 * 1 2 3 31 31 H 1.09001 * 109.46703 * 240.00283 * 2 1 3 32 32 H 1.08996 * 109.46822 * 120.00183 * 2 1 3 33 33 H 1.09002 * 109.46997 * 35.00397 * 4 3 2 34 34 H 1.09001 * 109.46975 * 154.99960 * 4 3 2 35 35 H 0.97003 * 120.00367 * 180.02562 * 8 7 5 36 36 H 0.96994 * 120.00226 * 115.64857 * 16 13 3 37 37 H 1.08995 * 109.47005 * 300.00291 * 19 17 16 38 38 H 1.08996 * 109.47161 * 60.00172 * 19 17 16 39 39 H 1.09003 * 109.46676 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.47340 * 299.99945 * 20 19 17 41 41 H 1.09005 * 109.47325 * 59.99700 * 23 21 20 42 42 H 1.08996 * 109.46908 * 179.97438 * 23 21 20 43 43 H 1.09002 * 109.47308 * 299.99505 * 23 21 20 44 44 H 1.08995 * 109.47353 * 300.00225 * 24 21 20 45 45 H 1.08996 * 109.46942 * 180.02562 * 24 21 20 46 46 H 1.09002 * 109.46945 * 60.00144 * 27 25 17 47 47 H 1.08996 * 109.47358 * 180.02562 * 27 25 17 48 48 H 1.08997 * 109.46883 * 300.00390 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1273 2.1196 -1.2606 5 6 3.4482 1.8052 -1.9144 6 1 4.1374 1.1233 -1.4387 7 6 3.7768 2.3883 -3.1199 8 7 2.9377 3.2191 -3.6989 9 14 5.4138 1.9981 -3.9306 10 1 5.2556 0.8232 -4.8250 11 1 5.8638 3.1686 -4.7259 12 1 6.4234 1.6921 -2.8855 13 16 2.4473 2.1078 1.4250 14 8 3.2436 3.2324 1.0781 15 8 2.8998 1.0703 2.2841 16 7 1.0620 2.7077 2.1057 17 6 0.3154 3.7720 1.4302 18 1 0.5357 3.7493 0.3629 19 6 0.7260 5.1283 2.0070 20 6 -0.0543 6.2396 1.3020 21 6 -1.5538 6.0263 1.5184 22 1 -1.7737 6.0488 2.5857 23 6 -2.3340 7.1380 0.8139 24 6 -1.9644 4.6700 0.9415 25 6 -1.1843 3.5589 1.6461 26 1 -1.4768 2.5926 1.2351 27 6 -1.4936 3.5906 3.1442 28 1 -0.3633 -1.0242 0.0845 29 1 -0.3633 0.5853 0.8448 30 1 -0.3633 0.4390 -0.9291 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3142 1.8265 -1.9248 34 1 2.0660 3.1895 -1.0615 35 1 3.1687 3.6290 -4.5472 36 1 0.7449 2.3546 2.9516 37 1 0.5057 5.1509 3.0743 38 1 1.7943 5.2801 1.8533 39 1 0.2386 7.2059 1.7126 40 1 0.1656 6.2171 0.2347 41 1 -2.1142 7.1159 -0.2535 42 1 -3.4023 6.9857 0.9677 43 1 -2.0414 8.1041 1.2253 44 1 -1.7445 4.6475 -0.1258 45 1 -3.0327 4.5181 1.0953 46 1 -1.2011 4.5569 3.5551 47 1 -2.5618 3.4384 3.2979 48 1 -0.9380 2.7989 3.6467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337086485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:41 Heat of formation + Delta-G solvation = -130.583540 kcal Electronic energy + Delta-G solvation = -27448.039132 eV Core-core repulsion = 23855.474925 eV Total energy + Delta-G solvation = -3592.564207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58398 -38.26721 -37.67802 -36.83879 -35.85847 -34.71317 -32.93519 -31.60882 -31.42732 -28.50084 -27.67336 -26.46140 -24.94741 -23.40127 -23.17584 -21.97006 -20.35771 -19.75697 -19.02260 -18.28821 -18.23989 -17.56082 -16.85265 -16.31082 -15.67165 -15.59729 -15.34068 -15.17064 -14.79577 -14.70262 -14.58285 -14.21088 -13.83845 -13.63436 -13.56576 -13.37435 -13.20529 -13.07861 -13.02437 -12.93490 -12.82798 -12.74475 -12.69886 -12.49399 -12.36691 -12.22162 -12.17463 -11.93061 -11.79152 -11.67755 -11.62978 -11.29006 -11.10472 -10.88761 -10.59264 -10.26235 -9.79478 -8.20500 -6.32044 -0.30417 1.37354 1.39723 1.50109 2.05165 2.39609 2.65897 3.10397 3.46421 3.70902 3.75535 3.88056 4.00547 4.12470 4.24860 4.26516 4.41062 4.46817 4.47652 4.50715 4.59636 4.65969 4.75789 4.79312 4.88188 4.95160 5.01322 5.03779 5.06036 5.12598 5.15819 5.17638 5.20453 5.28586 5.30679 5.33833 5.41048 5.46655 5.51549 5.53396 5.57835 5.70572 5.73299 5.92699 6.12072 6.23888 6.76143 7.36571 8.86807 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.005100 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.974741 B = 5488.423620 C = 6375.240388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -0.996 5.996 4 C 0.277 3.723 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.276 1.276 13 S 2.792 3.208 14 O -1.010 7.010 15 O -1.016 7.016 16 N -1.108 6.108 17 C 0.158 3.842 18 H 0.058 0.942 19 C -0.138 4.138 20 C -0.113 4.113 21 C -0.088 4.088 22 H 0.089 0.911 23 C -0.146 4.146 24 C -0.108 4.108 25 C -0.089 4.089 26 H 0.079 0.921 27 C -0.148 4.148 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.422 0.578 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 1.985 12.414 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.837 5.837 4 C 0.153 3.847 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.201 1.201 13 S 2.800 3.200 14 O -0.993 6.993 15 O -1.000 7.000 16 N -0.871 5.871 17 C 0.051 3.949 18 H 0.076 0.924 19 C -0.177 4.177 20 C -0.152 4.152 21 C -0.107 4.107 22 H 0.107 0.893 23 C -0.204 4.204 24 C -0.146 4.146 25 C -0.109 4.109 26 H 0.097 0.903 27 C -0.205 4.205 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.259 0.741 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.963 2.208 12.441 18.831 hybrid contribution 0.902 -0.223 -0.784 1.215 sum -13.061 1.985 11.658 17.619 Atomic orbital electron populations 1.22178 0.94280 1.03267 1.02260 1.21364 0.95568 0.81403 1.03256 1.57567 1.81542 1.22577 1.21996 1.18549 0.95753 0.90087 0.80272 1.21837 1.04032 1.27224 1.05942 0.93261 1.25702 1.00533 0.94664 0.97614 1.70002 1.37482 1.30407 1.18182 0.85621 0.79789 0.78261 0.78432 1.19008 1.20348 1.20105 1.01357 0.73840 0.72485 0.72308 1.93562 1.67984 1.53642 1.84094 1.93495 1.80648 1.58584 1.67275 1.55837 1.45897 1.50332 1.35048 1.20836 0.93039 0.85974 0.95012 0.92393 1.22071 0.99600 0.94288 1.01714 1.21584 0.95646 0.98044 0.99886 1.21180 0.93490 0.94776 1.01213 0.89295 1.21819 1.00348 0.98114 1.00070 1.21623 1.00329 0.93559 0.99122 1.21333 0.91469 0.99872 0.98221 0.90305 1.21938 1.02371 1.02500 0.93730 0.89455 0.91743 0.93113 0.91005 0.89890 0.95494 0.96594 0.92412 0.74109 0.89268 0.93786 0.90861 0.93719 0.93724 0.91473 0.92273 0.93208 0.89583 0.91423 0.90871 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.23 71.99 0.74 -3.47 16 2 C 0.11 3.75 6.41 86.38 0.55 4.31 16 3 N -1.00 -41.66 2.83 -519.83 -1.47 -43.13 16 4 C 0.28 14.17 4.89 85.63 0.42 14.59 16 5 C -0.55 -31.70 9.38 25.60 0.24 -31.46 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.84 5.46 84.66 0.46 1.30 16 8 N -0.92 -54.33 13.29 21.45 0.28 -54.05 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 S 2.79 113.25 6.00 -56.49 -0.34 112.92 16 14 O -1.01 -50.35 16.29 -128.00 -2.09 -52.44 16 15 O -1.02 -43.10 16.82 -128.00 -2.15 -45.25 16 16 N -1.11 -32.00 5.49 -169.39 -0.93 -32.93 16 17 C 0.16 4.41 2.39 44.99 0.11 4.52 16 18 H 0.06 2.01 6.91 -2.38 -0.02 1.99 16 19 C -0.14 -3.69 5.25 30.60 0.16 -3.53 16 20 C -0.11 -2.67 5.20 30.60 0.16 -2.51 16 21 C -0.09 -1.58 2.44 -10.79 -0.03 -1.60 16 22 H 0.09 1.32 6.43 -2.39 -0.02 1.30 16 23 C -0.15 -2.36 9.19 71.98 0.66 -1.70 16 24 C -0.11 -2.03 4.73 30.58 0.14 -1.88 16 25 C -0.09 -1.78 2.90 -10.81 -0.03 -1.81 16 26 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 27 C -0.15 -2.20 8.31 71.98 0.60 -1.61 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.50 7.87 -2.38 -0.02 1.48 16 30 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 31 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 32 H 0.08 2.67 6.98 -2.39 -0.02 2.65 16 33 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 34 H 0.02 0.89 6.63 -2.39 -0.02 0.88 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.42 9.49 7.04 -96.75 -0.68 8.81 16 37 H 0.09 1.93 6.43 -2.39 -0.02 1.92 16 38 H 0.04 1.47 7.74 -2.39 -0.02 1.46 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 0.96 4.81 -2.39 -0.01 0.95 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.81 6.51 -2.39 -0.02 0.80 16 Total: -1.00 -71.63 377.31 -0.23 -71.86 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.25 Total: 20.60 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.19 Total: -24.87 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -2.11 Total: -130.11 kcal Atomic # 8 Polarization: -93.45 SS G_CDS: -4.24 Total: -97.69 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 113.25 SS G_CDS: -0.34 Total: 112.92 kcal Total: -71.63 -0.23 -71.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.723 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds