Wall clock time and date at job start Tue Mar 31 2020 12:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47335 * 2 1 4 4 C 1.46501 * 120.00186 * 275.00309 * 3 2 1 5 5 C 1.50703 * 109.46578 * 279.38383 * 4 3 2 6 6 H 1.07995 * 120.00346 * 4.89016 * 5 4 3 7 7 C 1.37887 * 119.99662 * 184.88546 * 5 4 3 8 8 N 1.31514 * 119.99893 * 5.13300 * 7 5 4 9 9 Si 1.86796 * 119.99940 * 185.13112 * 7 5 4 10 10 H 1.48502 * 109.47249 * 65.00117 * 9 7 5 11 11 H 1.48497 * 109.47195 * 185.00279 * 9 7 5 12 12 H 1.48504 * 109.47367 * 305.00146 * 9 7 5 13 13 S 1.65603 * 120.00080 * 94.99695 * 3 2 1 14 14 O 1.42102 * 106.40180 * 144.48781 * 13 3 2 15 15 O 1.42103 * 106.40019 * 11.56966 * 13 3 2 16 16 N 1.65595 * 107.22108 * 258.02696 * 13 3 2 17 17 C 1.46503 * 119.99699 * 61.45114 * 16 13 3 18 18 H 1.09006 * 109.47123 * 18.51325 * 17 16 13 19 19 C 1.52995 * 109.47226 * 258.51192 * 17 16 13 20 20 C 1.53006 * 109.47285 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47372 * 59.99605 * 20 19 17 22 22 H 1.08997 * 109.47150 * 59.99936 * 21 20 19 23 23 C 1.52994 * 109.47287 * 180.02562 * 21 20 19 24 24 C 1.53004 * 109.47247 * 300.00555 * 21 20 19 25 25 C 1.52994 * 109.47182 * 59.99684 * 24 21 20 26 26 H 1.08997 * 109.47325 * 60.00551 * 25 24 21 27 27 C 1.53007 * 109.47156 * 180.02562 * 25 24 21 28 28 H 1.09004 * 109.47016 * 299.99982 * 1 2 3 29 29 H 1.08997 * 109.47245 * 59.99681 * 1 2 3 30 30 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47478 * 239.99891 * 2 1 3 32 32 H 1.09004 * 109.47493 * 120.00051 * 2 1 3 33 33 H 1.08999 * 109.47242 * 39.37926 * 4 3 2 34 34 H 1.08997 * 109.47447 * 159.38588 * 4 3 2 35 35 H 0.97005 * 119.99884 * 179.97438 * 8 7 5 36 36 H 0.96994 * 120.00881 * 241.45074 * 16 13 3 37 37 H 1.08996 * 109.47417 * 59.99959 * 19 17 16 38 38 H 1.09000 * 109.47095 * 299.99402 * 19 17 16 39 39 H 1.08997 * 109.46710 * 299.99909 * 20 19 17 40 40 H 1.09001 * 109.47242 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47000 * 60.00177 * 23 21 20 42 42 H 1.09001 * 109.47036 * 300.00180 * 23 21 20 43 43 H 1.09006 * 109.47245 * 179.97438 * 23 21 20 44 44 H 1.08996 * 109.47426 * 179.97438 * 24 21 20 45 45 H 1.09006 * 109.46547 * 299.99582 * 24 21 20 46 46 H 1.08994 * 109.47143 * 180.02562 * 27 25 24 47 47 H 1.09006 * 109.46642 * 299.99479 * 27 25 24 48 48 H 1.08997 * 109.47001 * 59.99804 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4464 1.7067 -1.9348 6 1 4.0570 0.9253 -1.5073 7 6 3.8454 2.3367 -3.0946 8 7 3.1558 3.3551 -3.5604 9 14 5.3653 1.7436 -4.0043 10 1 5.1311 0.3695 -4.5163 11 1 5.6479 2.6545 -5.1425 12 1 6.5253 1.7354 -3.0772 13 16 2.4121 2.1202 1.4287 14 8 3.5261 2.9584 1.1532 15 8 2.4336 1.0986 2.4163 16 7 1.1567 3.1255 1.8230 17 6 -0.1792 2.5717 2.0577 18 1 -0.0998 1.5025 2.2546 19 6 -1.0501 2.7992 0.8206 20 6 -2.4455 2.2214 1.0659 21 6 -3.0807 2.9167 2.2716 22 1 -3.1596 3.9858 2.0745 23 6 -4.4757 2.3385 2.5173 24 6 -2.2097 2.6893 3.5088 25 6 -0.8144 3.2671 3.2635 26 1 -0.8934 4.3362 3.0664 27 6 0.0568 3.0391 4.5005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3186 1.8686 -1.9162 34 1 2.1703 3.1806 -1.0667 35 1 3.4367 3.7985 -4.3762 36 1 1.3057 4.0809 1.8986 37 1 -0.5974 2.3041 -0.0385 38 1 -1.1295 3.8683 0.6237 39 1 -2.3665 1.1523 1.2630 40 1 -3.0661 2.3838 0.1847 41 1 -4.3963 1.2695 2.7146 42 1 -5.0964 2.5002 1.6360 43 1 -4.9281 2.8336 3.3766 44 1 -2.6619 3.1850 4.3677 45 1 -2.1307 1.6201 3.7059 46 1 1.0506 3.4511 4.3258 47 1 -0.3956 3.5343 5.3597 48 1 0.1357 1.9699 4.6972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337086486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:44 Heat of formation + Delta-G solvation = -108.272357 kcal Electronic energy + Delta-G solvation = -27510.619112 eV Core-core repulsion = 23919.022391 eV Total energy + Delta-G solvation = -3591.596721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.48821 -36.56649 -36.03804 -35.11572 -34.88305 -32.74596 -32.44645 -30.65055 -29.80915 -26.69960 -26.55086 -25.44337 -23.22753 -22.09571 -21.67715 -20.63622 -20.05227 -18.61602 -17.31173 -16.71766 -16.35190 -16.08911 -15.28365 -14.88542 -14.69723 -14.34907 -14.15284 -14.08903 -13.53724 -13.34161 -13.14416 -12.84190 -12.59695 -12.40872 -12.30886 -12.09260 -11.91912 -11.83944 -11.57862 -11.48892 -11.41593 -11.40714 -11.28634 -11.05280 -10.94772 -10.89040 -10.75881 -10.57723 -10.48385 -10.41721 -10.29704 -10.07631 -9.92288 -9.74850 -9.09716 -8.41753 -8.04401 -6.05091 -4.07775 1.31320 3.34226 3.38120 3.42378 3.54768 4.17565 4.46078 4.53735 4.57748 4.72727 4.89800 5.05475 5.09460 5.24567 5.30068 5.30715 5.35031 5.44165 5.46496 5.49835 5.58462 5.66494 5.71327 5.74710 5.75953 5.78593 5.85015 5.91609 5.94247 6.02679 6.08510 6.14663 6.20080 6.26019 6.29438 6.33395 6.45972 6.50511 6.66788 6.68296 7.19314 7.30281 7.45769 7.66746 7.93839 8.23704 8.94263 9.56816 11.03520 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.004415 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.761352 B = 6340.668877 C = 6920.996647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.779 3.221 14 O -0.969 6.969 15 O -1.000 7.000 16 N -1.127 6.127 17 C 0.160 3.840 18 H 0.089 0.911 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.095 4.095 22 H 0.069 0.931 23 C -0.147 4.147 24 C -0.107 4.107 25 C -0.095 4.095 26 H 0.074 0.926 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -1.542 12.144 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.139 3.861 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.952 6.952 15 O -0.984 6.984 16 N -0.884 5.884 17 C 0.052 3.948 18 H 0.107 0.893 19 C -0.186 4.186 20 C -0.150 4.150 21 C -0.113 4.113 22 H 0.088 0.912 23 C -0.204 4.204 24 C -0.145 4.145 25 C -0.115 4.115 26 H 0.092 0.908 27 C -0.205 4.205 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.857 -1.737 12.479 18.729 hybrid contribution 0.544 0.326 -0.908 1.107 sum -13.314 -1.411 11.572 17.696 Atomic orbital electron populations 1.22587 0.97501 1.01643 1.02314 1.21126 0.93098 0.83311 1.03376 1.57687 1.81107 1.21314 1.23147 1.18977 0.96964 0.91146 0.79028 1.21457 1.06707 1.20193 1.08356 0.92154 1.24926 0.97080 0.94552 0.97419 1.69914 1.40173 1.20874 1.22509 0.86589 0.83337 0.78529 0.79184 1.20280 1.21240 1.20011 1.01992 0.73177 0.73101 0.73041 1.93644 1.48312 1.68373 1.84907 1.93515 1.87049 1.58637 1.59188 1.56210 1.23511 1.21515 1.87161 1.20818 0.81774 0.97938 0.94224 0.89324 1.22256 0.95137 1.02361 0.98825 1.21591 0.95769 1.00056 0.97622 1.21182 0.94552 1.00303 0.95280 0.91210 1.21823 0.96343 1.00967 1.01265 1.21646 0.94106 1.01315 0.97436 1.21396 0.94761 1.00410 0.94896 0.90755 1.21817 0.99830 1.02208 0.96643 0.92402 0.91786 0.92304 0.89802 0.90657 0.95287 0.94364 0.92703 0.75627 0.89654 0.91409 0.91700 0.91708 0.92716 0.92777 0.92966 0.91822 0.91700 0.92388 0.92939 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.89 37.15 0.33 -2.16 16 2 C 0.12 2.02 6.31 -4.05 -0.03 1.99 16 3 N -0.99 -20.05 2.84 -115.67 -0.33 -20.38 16 4 C 0.26 6.35 5.18 -5.19 -0.03 6.32 16 5 C -0.53 -14.65 9.33 -34.44 -0.32 -14.98 16 6 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 7 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 S 2.78 55.06 5.91 -107.50 -0.64 54.43 16 14 O -0.97 -23.56 17.49 -57.17 -1.00 -24.56 16 15 O -1.00 -20.45 16.06 -57.17 -0.92 -21.37 16 16 N -1.13 -16.98 4.71 -4.89 -0.02 -17.00 16 17 C 0.16 2.03 1.88 -67.93 -0.13 1.90 16 18 H 0.09 1.19 5.67 -51.93 -0.29 0.89 16 19 C -0.15 -1.77 4.59 -26.73 -0.12 -1.90 16 20 C -0.11 -1.11 5.10 -26.73 -0.14 -1.24 16 21 C -0.09 -0.82 2.72 -90.62 -0.25 -1.07 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.10 9.19 37.15 0.34 -0.76 16 24 C -0.11 -0.95 4.48 -26.73 -0.12 -1.07 16 25 C -0.09 -0.99 2.40 -90.62 -0.22 -1.21 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 C -0.15 -1.62 9.03 37.16 0.34 -1.28 16 28 H 0.06 0.74 3.05 -51.93 -0.16 0.58 16 29 H 0.06 0.91 7.33 -51.93 -0.38 0.53 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 32 H 0.08 1.25 6.88 -51.93 -0.36 0.90 16 33 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.04 1.00 7.78 -51.93 -0.40 0.60 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.41 5.56 8.90 -34.47 -0.31 5.25 16 37 H 0.08 1.19 5.67 -51.93 -0.29 0.89 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.63 7.35 -51.93 -0.38 0.24 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -32.50 376.01 -10.39 -42.89 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.43 Total: 2.61 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.43 Total: -13.80 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.39 Total: -62.63 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.92 Total: -45.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 55.06 SS G_CDS: -0.64 Total: 54.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.50 -10.39 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.382 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds