Wall clock time and date at job start Tue Mar 31 2020 12:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47335 * 2 1 4 4 C 1.46501 * 120.00186 * 275.00309 * 3 2 1 5 5 C 1.50703 * 109.46578 * 279.38383 * 4 3 2 6 6 H 1.07995 * 120.00346 * 4.89016 * 5 4 3 7 7 C 1.37887 * 119.99662 * 184.88546 * 5 4 3 8 8 N 1.31514 * 119.99893 * 5.13300 * 7 5 4 9 9 Si 1.86796 * 119.99940 * 185.13112 * 7 5 4 10 10 H 1.48502 * 109.47249 * 65.00117 * 9 7 5 11 11 H 1.48497 * 109.47195 * 185.00279 * 9 7 5 12 12 H 1.48504 * 109.47367 * 305.00146 * 9 7 5 13 13 S 1.65603 * 120.00080 * 94.99695 * 3 2 1 14 14 O 1.42102 * 106.40180 * 144.48781 * 13 3 2 15 15 O 1.42103 * 106.40019 * 11.56966 * 13 3 2 16 16 N 1.65595 * 107.22108 * 258.02696 * 13 3 2 17 17 C 1.46503 * 119.99699 * 61.45114 * 16 13 3 18 18 H 1.09006 * 109.47123 * 18.51325 * 17 16 13 19 19 C 1.52995 * 109.47226 * 258.51192 * 17 16 13 20 20 C 1.53006 * 109.47285 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47372 * 59.99605 * 20 19 17 22 22 H 1.08997 * 109.47150 * 59.99936 * 21 20 19 23 23 C 1.52994 * 109.47287 * 180.02562 * 21 20 19 24 24 C 1.53004 * 109.47247 * 300.00555 * 21 20 19 25 25 C 1.52994 * 109.47182 * 59.99684 * 24 21 20 26 26 H 1.08997 * 109.47325 * 60.00551 * 25 24 21 27 27 C 1.53007 * 109.47156 * 180.02562 * 25 24 21 28 28 H 1.09004 * 109.47016 * 299.99982 * 1 2 3 29 29 H 1.08997 * 109.47245 * 59.99681 * 1 2 3 30 30 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47478 * 239.99891 * 2 1 3 32 32 H 1.09004 * 109.47493 * 120.00051 * 2 1 3 33 33 H 1.08999 * 109.47242 * 39.37926 * 4 3 2 34 34 H 1.08997 * 109.47447 * 159.38588 * 4 3 2 35 35 H 0.97005 * 119.99884 * 179.97438 * 8 7 5 36 36 H 0.96994 * 120.00881 * 241.45074 * 16 13 3 37 37 H 1.08996 * 109.47417 * 59.99959 * 19 17 16 38 38 H 1.09000 * 109.47095 * 299.99402 * 19 17 16 39 39 H 1.08997 * 109.46710 * 299.99909 * 20 19 17 40 40 H 1.09001 * 109.47242 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47000 * 60.00177 * 23 21 20 42 42 H 1.09001 * 109.47036 * 300.00180 * 23 21 20 43 43 H 1.09006 * 109.47245 * 179.97438 * 23 21 20 44 44 H 1.08996 * 109.47426 * 179.97438 * 24 21 20 45 45 H 1.09006 * 109.46547 * 299.99582 * 24 21 20 46 46 H 1.08994 * 109.47143 * 180.02562 * 27 25 24 47 47 H 1.09006 * 109.46642 * 299.99479 * 27 25 24 48 48 H 1.08997 * 109.47001 * 59.99804 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4464 1.7067 -1.9348 6 1 4.0570 0.9253 -1.5073 7 6 3.8454 2.3367 -3.0946 8 7 3.1558 3.3551 -3.5604 9 14 5.3653 1.7436 -4.0043 10 1 5.1311 0.3695 -4.5163 11 1 5.6479 2.6545 -5.1425 12 1 6.5253 1.7354 -3.0772 13 16 2.4121 2.1202 1.4287 14 8 3.5261 2.9584 1.1532 15 8 2.4336 1.0986 2.4163 16 7 1.1567 3.1255 1.8230 17 6 -0.1792 2.5717 2.0577 18 1 -0.0998 1.5025 2.2546 19 6 -1.0501 2.7992 0.8206 20 6 -2.4455 2.2214 1.0659 21 6 -3.0807 2.9167 2.2716 22 1 -3.1596 3.9858 2.0745 23 6 -4.4757 2.3385 2.5173 24 6 -2.2097 2.6893 3.5088 25 6 -0.8144 3.2671 3.2635 26 1 -0.8934 4.3362 3.0664 27 6 0.0568 3.0391 4.5005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3186 1.8686 -1.9162 34 1 2.1703 3.1806 -1.0667 35 1 3.4367 3.7985 -4.3762 36 1 1.3057 4.0809 1.8986 37 1 -0.5974 2.3041 -0.0385 38 1 -1.1295 3.8683 0.6237 39 1 -2.3665 1.1523 1.2630 40 1 -3.0661 2.3838 0.1847 41 1 -4.3963 1.2695 2.7146 42 1 -5.0964 2.5002 1.6360 43 1 -4.9281 2.8336 3.3766 44 1 -2.6619 3.1850 4.3677 45 1 -2.1307 1.6201 3.7059 46 1 1.0506 3.4511 4.3258 47 1 -0.3956 3.5343 5.3597 48 1 0.1357 1.9699 4.6972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337086486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:43 Heat of formation + Delta-G solvation = -129.829001 kcal Electronic energy + Delta-G solvation = -27511.553878 eV Core-core repulsion = 23919.022391 eV Total energy + Delta-G solvation = -3592.531488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39268 -38.24811 -37.67556 -36.84841 -35.86202 -34.71493 -33.43660 -31.81533 -31.15214 -28.48798 -27.41810 -26.32697 -24.98178 -23.45784 -22.80682 -21.52122 -20.92226 -20.09157 -18.95524 -18.37703 -18.15012 -17.52057 -16.88398 -16.20694 -15.75353 -15.69892 -15.27029 -15.03631 -14.71179 -14.68569 -14.62028 -14.13947 -13.80999 -13.60479 -13.43671 -13.30074 -13.17877 -13.14547 -13.07884 -12.97322 -12.81736 -12.75905 -12.65354 -12.50332 -12.33846 -12.19637 -12.05992 -11.89075 -11.75629 -11.68395 -11.54678 -11.29865 -11.19908 -10.94053 -10.57150 -10.24164 -9.76613 -8.19125 -6.29418 -0.27546 1.39549 1.42330 1.49693 2.03524 2.41545 2.64577 3.11706 3.50133 3.66057 3.77592 3.91266 3.99176 4.14506 4.23112 4.28404 4.44062 4.48783 4.51273 4.52696 4.59633 4.67443 4.76039 4.84751 4.88568 4.92777 5.00332 5.03340 5.08282 5.13415 5.16507 5.19252 5.20361 5.31412 5.31827 5.36989 5.44977 5.48624 5.52370 5.55159 5.57186 5.71917 5.73655 5.93524 6.12921 6.20530 6.78380 7.38714 8.88159 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.004415 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.761352 B = 6340.668877 C = 6920.996647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.280 3.720 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.279 1.279 13 S 2.792 3.208 14 O -1.019 7.019 15 O -1.007 7.007 16 N -1.114 6.114 17 C 0.154 3.846 18 H 0.084 0.916 19 C -0.145 4.145 20 C -0.109 4.109 21 C -0.092 4.092 22 H 0.070 0.930 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.090 4.090 26 H 0.082 0.918 27 C -0.150 4.150 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.015 0.985 35 H 0.266 0.734 36 H 0.419 0.581 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.372 -2.127 12.892 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.156 3.844 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.204 1.204 13 S 2.801 3.199 14 O -1.003 7.003 15 O -0.991 6.991 16 N -0.875 5.875 17 C 0.048 3.952 18 H 0.102 0.898 19 C -0.184 4.184 20 C -0.147 4.147 21 C -0.110 4.110 22 H 0.089 0.911 23 C -0.201 4.201 24 C -0.141 4.141 25 C -0.110 4.110 26 H 0.100 0.900 27 C -0.207 4.207 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.583 -2.346 13.235 20.579 hybrid contribution 1.037 0.505 -1.072 1.575 sum -14.546 -1.840 12.163 19.050 Atomic orbital electron populations 1.22509 0.94569 1.03535 1.02511 1.21363 0.95603 0.81548 1.03197 1.57547 1.81610 1.22536 1.21813 1.18506 0.95500 0.90132 0.80256 1.21829 1.07932 1.20105 1.08971 0.92990 1.25714 0.99985 0.94679 0.98246 1.70007 1.41641 1.21694 1.22960 0.85669 0.79570 0.78825 0.78004 1.18784 1.20344 1.20449 1.01332 0.73055 0.72775 0.72755 1.93571 1.51602 1.69561 1.85567 1.93498 1.87369 1.59108 1.59088 1.55823 1.23704 1.21464 1.86534 1.21093 0.80406 0.97919 0.95802 0.89786 1.22217 0.96343 1.02246 0.97613 1.21581 0.94243 1.00288 0.98572 1.21155 0.95131 1.00284 0.94435 0.91137 1.21790 0.95426 1.01108 1.01784 1.21639 0.92822 1.01466 0.98165 1.21391 0.95527 1.00707 0.93369 0.89990 1.21846 0.99353 1.01828 0.97717 0.91437 0.92394 0.89496 0.90686 0.90116 0.95539 0.96667 0.92473 0.74607 0.91679 0.91557 0.91264 0.91286 0.92494 0.92574 0.92067 0.90155 0.91574 0.93917 0.90816 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 8.89 71.98 0.64 -3.88 16 2 C 0.11 3.71 6.31 86.38 0.55 4.25 16 3 N -0.99 -40.98 2.84 -519.86 -1.47 -42.45 16 4 C 0.28 14.00 5.18 85.63 0.44 14.44 16 5 C -0.55 -31.13 9.33 25.60 0.24 -30.89 16 6 H 0.05 2.96 7.82 -2.91 -0.02 2.93 16 7 C 0.01 0.75 5.45 84.66 0.46 1.22 16 8 N -0.92 -54.24 13.29 21.45 0.28 -53.96 16 9 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 S 2.79 112.78 5.91 -56.49 -0.33 112.45 16 14 O -1.02 -51.29 17.49 -128.00 -2.24 -53.53 16 15 O -1.01 -41.25 16.06 -128.00 -2.06 -43.30 16 16 N -1.11 -33.67 4.71 -169.38 -0.80 -34.47 16 17 C 0.15 3.76 1.88 44.99 0.08 3.84 16 18 H 0.08 2.15 5.67 -2.38 -0.01 2.13 16 19 C -0.15 -3.37 4.59 30.59 0.14 -3.23 16 20 C -0.11 -1.92 5.10 30.59 0.16 -1.77 16 21 C -0.09 -1.34 2.72 -10.80 -0.03 -1.37 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 24 C -0.10 -1.54 4.48 30.59 0.14 -1.40 16 25 C -0.09 -1.71 2.40 -10.79 -0.03 -1.74 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 C -0.15 -3.05 9.03 71.98 0.65 -2.40 16 28 H 0.07 1.62 3.05 -2.38 -0.01 1.61 16 29 H 0.06 1.60 7.33 -2.39 -0.02 1.58 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 32 H 0.08 2.66 6.88 -2.38 -0.02 2.64 16 33 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.02 0.83 7.78 -2.39 -0.02 0.81 16 35 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 36 H 0.42 11.43 8.90 -96.75 -0.86 10.57 16 37 H 0.06 1.79 5.67 -2.39 -0.01 1.78 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.17 7.35 -2.39 -0.02 1.15 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.04 0.98 7.60 -2.39 -0.02 0.96 16 47 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.17 376.01 -0.41 -70.58 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.07 Total: 21.82 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.10 Total: -23.99 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -1.99 Total: -130.88 kcal Atomic # 8 Polarization: -92.54 SS G_CDS: -4.29 Total: -96.83 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 112.78 SS G_CDS: -0.33 Total: 112.45 kcal Total: -70.17 -0.41 -70.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.249 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds