Wall clock time and date at job start Tue Mar 31 2020 12:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47383 * 2 1 4 4 C 1.46493 * 120.00251 * 274.47900 * 3 2 1 5 5 C 1.50701 * 109.46922 * 274.99820 * 4 3 2 6 6 H 1.07999 * 119.99932 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00046 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47573 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47089 * 120.00249 * 9 7 5 12 12 H 1.48498 * 109.47680 * 240.00130 * 9 7 5 13 13 S 1.65604 * 119.99659 * 94.47278 * 3 2 1 14 14 O 1.42094 * 106.40040 * 150.66487 * 13 3 2 15 15 O 1.42106 * 106.40032 * 17.75173 * 13 3 2 16 16 N 1.65590 * 107.22126 * 264.21020 * 13 3 2 17 17 C 1.46508 * 119.99992 * 293.94717 * 16 13 3 18 18 H 1.09000 * 109.46526 * 26.02156 * 17 16 13 19 19 C 1.52996 * 109.47045 * 266.01735 * 17 16 13 20 20 C 1.52999 * 109.47255 * 300.00022 * 19 17 16 21 21 C 1.52999 * 109.46853 * 299.99718 * 20 19 17 22 22 H 1.08999 * 109.47712 * 300.00137 * 21 20 19 23 23 C 1.53002 * 109.47202 * 179.97438 * 21 20 19 24 24 C 1.53010 * 109.47086 * 60.00121 * 21 20 19 25 25 C 1.52994 * 109.47029 * 300.00186 * 24 21 20 26 26 H 1.09008 * 109.47012 * 299.99317 * 25 24 21 27 27 C 1.53001 * 109.46923 * 180.02562 * 25 24 21 28 28 H 1.08994 * 109.47612 * 181.90776 * 1 2 3 29 29 H 1.09005 * 109.46609 * 301.90961 * 1 2 3 30 30 H 1.09001 * 109.46924 * 61.90730 * 1 2 3 31 31 H 1.08999 * 109.47285 * 240.00425 * 2 1 3 32 32 H 1.08999 * 109.47058 * 120.00681 * 2 1 3 33 33 H 1.09004 * 109.47178 * 34.99594 * 4 3 2 34 34 H 1.09005 * 109.47420 * 154.99799 * 4 3 2 35 35 H 0.97001 * 120.00024 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00581 * 113.94519 * 16 13 3 37 37 H 1.09001 * 109.47286 * 59.99872 * 19 17 16 38 38 H 1.09006 * 109.47032 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.47089 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47268 * 59.99737 * 20 19 17 41 41 H 1.08998 * 109.47163 * 300.00169 * 23 21 20 42 42 H 1.09002 * 109.46845 * 60.00406 * 23 21 20 43 43 H 1.09001 * 109.47200 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46897 * 179.97438 * 24 21 20 45 45 H 1.09003 * 109.46282 * 59.99972 * 24 21 20 46 46 H 1.08998 * 109.46816 * 305.93762 * 27 25 24 47 47 H 1.08997 * 109.47619 * 65.94651 * 27 25 24 48 48 H 1.09000 * 109.46573 * 185.94757 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1692 2.1049 -1.2648 5 6 3.5110 1.7831 -1.8707 6 1 4.1842 1.1075 -1.3640 7 6 3.8795 2.3521 -3.0713 8 7 3.0599 3.1752 -3.6879 9 14 5.5430 1.9538 -3.8219 10 1 6.2714 1.0083 -2.9383 11 1 5.3478 1.3327 -5.1567 12 1 6.3322 3.2032 -3.9681 13 16 2.3999 2.1245 1.4299 14 8 3.4194 3.0684 1.1319 15 8 2.5558 1.0895 2.3910 16 7 1.0739 2.9999 1.8963 17 6 0.6360 4.1477 1.0980 18 1 0.9571 4.0152 0.0648 19 6 1.2536 5.4279 1.6639 20 6 0.8029 5.6137 3.1142 21 6 -0.7227 5.7179 3.1647 22 1 -1.0486 6.5718 2.5708 23 6 -1.1735 5.9030 4.6151 24 6 -1.3404 4.4375 2.5988 25 6 -0.8896 4.2517 1.1486 26 1 -1.2155 5.1056 0.5545 27 6 -1.5077 2.9717 0.5824 28 1 -0.3634 -1.0270 0.0342 29 1 -0.3633 0.5432 0.8724 30 1 -0.3633 0.4839 -0.9066 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3786 1.8039 -1.9521 34 1 2.1015 3.1771 -1.0803 35 1 3.3194 3.5757 -4.5324 36 1 0.5871 2.7529 2.6981 37 1 2.3404 5.3538 1.6279 38 1 0.9281 6.2818 1.0697 39 1 1.2425 6.5261 3.5172 40 1 1.1287 4.7598 3.7082 41 1 -0.8478 5.0489 5.2087 42 1 -0.7335 6.8150 5.0187 43 1 -2.2604 5.9768 4.6511 44 1 -2.4273 4.5116 2.6352 45 1 -1.0145 3.5837 3.1928 46 1 -1.2690 2.1330 1.2363 47 1 -2.5898 3.0874 0.5201 48 1 -1.1046 2.7829 -0.4125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337086487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:46 Heat of formation + Delta-G solvation = -108.777106 kcal Electronic energy + Delta-G solvation = -27726.151897 eV Core-core repulsion = 24134.533288 eV Total energy + Delta-G solvation = -3591.618609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.52242 -36.55826 -36.02720 -35.07570 -34.41315 -32.66762 -32.37755 -30.40522 -29.98342 -26.74455 -26.49112 -25.73815 -23.13368 -21.98303 -21.68141 -20.58793 -19.74214 -18.51226 -17.37033 -16.69938 -16.26835 -15.91923 -15.20317 -14.86342 -14.68937 -14.31910 -13.87245 -13.80123 -13.75947 -13.49513 -13.18482 -12.87763 -12.47042 -12.37695 -12.09526 -12.07857 -11.87441 -11.79959 -11.60502 -11.55478 -11.43999 -11.26348 -11.22590 -10.99671 -10.97953 -10.89947 -10.66498 -10.51772 -10.44072 -10.34333 -10.22199 -9.95806 -9.84068 -9.67239 -9.05843 -8.42523 -8.03193 -6.05890 -4.08671 1.33431 3.31617 3.39511 3.45038 3.62394 4.20561 4.46094 4.64230 4.70343 4.74107 5.03690 5.12535 5.20536 5.26690 5.32848 5.39033 5.45450 5.53664 5.55903 5.60963 5.62121 5.72601 5.77233 5.78016 5.82022 5.84952 5.91738 5.99652 6.03186 6.14714 6.15602 6.22300 6.28853 6.31475 6.40910 6.44594 6.54038 6.60730 6.65630 6.69424 7.19985 7.32428 7.46203 7.67388 7.92911 8.22469 8.94103 9.56507 11.02563 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.004829 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.136081 B = 5796.373890 C = 6117.716178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.524 4.524 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.779 3.221 14 O -0.964 6.964 15 O -1.004 7.004 16 N -1.124 6.124 17 C 0.159 3.841 18 H 0.095 0.905 19 C -0.139 4.139 20 C -0.111 4.111 21 C -0.094 4.094 22 H 0.069 0.931 23 C -0.147 4.147 24 C -0.107 4.107 25 C -0.093 4.093 26 H 0.079 0.921 27 C -0.149 4.149 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.405 0.595 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 2.530 11.560 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.007 4.007 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 S 2.787 3.213 14 O -0.947 6.947 15 O -0.989 6.989 16 N -0.883 5.883 17 C 0.052 3.948 18 H 0.112 0.888 19 C -0.178 4.178 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.087 0.913 23 C -0.204 4.204 24 C -0.144 4.144 25 C -0.113 4.113 26 H 0.097 0.903 27 C -0.206 4.206 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.239 0.761 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.026 2.635 11.684 16.280 hybrid contribution 0.297 -0.184 -0.447 0.567 sum -10.729 2.451 11.238 15.729 Atomic orbital electron populations 1.22342 0.97297 1.01277 1.02091 1.21105 0.93074 0.83262 1.03300 1.57709 1.81065 1.21436 1.23100 1.19053 0.97301 0.90780 0.79213 1.21536 1.01823 1.27586 1.05424 0.92162 1.24904 0.97312 0.94888 0.96856 1.69917 1.36075 1.30568 1.17035 0.86488 0.84084 0.78330 0.78815 1.19683 1.21058 1.20866 1.01974 0.73684 0.72967 0.72665 1.93623 1.54002 1.62774 1.84328 1.93518 1.86124 1.57665 1.61565 1.56279 1.51357 1.43115 1.37525 1.20829 0.93858 0.85109 0.95008 0.88753 1.22055 1.02227 0.97453 0.96073 1.21532 0.94591 1.01515 0.97188 1.21171 0.95824 0.98130 0.96085 0.91279 1.21830 1.00686 1.01500 0.96382 1.21628 0.99726 0.97435 0.95659 1.21359 0.94441 0.99056 0.96483 0.90272 1.21931 0.99724 0.97184 1.01756 0.92483 0.92999 0.92004 0.89913 0.90748 0.94771 0.94707 0.92824 0.76146 0.90118 0.91212 0.92308 0.91946 0.92811 0.92912 0.93006 0.92093 0.92050 0.92265 0.93182 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.20 37.16 0.38 -1.98 16 2 C 0.12 2.05 6.37 -4.04 -0.03 2.02 16 3 N -0.99 -19.83 2.82 -115.66 -0.33 -20.15 16 4 C 0.26 6.16 4.83 -5.20 -0.03 6.14 16 5 C -0.52 -14.43 9.38 -34.44 -0.32 -14.75 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 S 2.78 54.25 5.99 -107.50 -0.64 53.61 16 14 O -0.96 -22.69 16.46 -57.17 -0.94 -23.63 16 15 O -1.00 -20.82 16.60 -57.17 -0.95 -21.76 16 16 N -1.12 -16.43 4.14 -4.89 -0.02 -16.45 16 17 C 0.16 2.25 2.43 -67.93 -0.17 2.08 16 18 H 0.09 1.57 5.65 -51.93 -0.29 1.28 16 19 C -0.14 -1.90 5.64 -26.73 -0.15 -2.05 16 20 C -0.11 -1.26 5.05 -26.73 -0.13 -1.39 16 21 C -0.09 -0.90 2.72 -90.61 -0.25 -1.15 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 24 C -0.11 -1.03 4.30 -26.73 -0.11 -1.15 16 25 C -0.09 -1.05 2.53 -90.62 -0.23 -1.28 16 26 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 27 C -0.15 -1.67 8.83 37.16 0.33 -1.35 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.66 6.07 -51.93 -0.32 0.35 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.47 8.11 -51.93 -0.42 1.04 16 32 H 0.07 1.25 6.89 -51.93 -0.36 0.89 16 33 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.04 0.87 5.76 -51.93 -0.30 0.57 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.41 5.01 6.84 -34.47 -0.24 4.78 16 37 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.74 7.47 -51.93 -0.39 0.35 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.59 6.50 -51.93 -0.34 0.26 16 46 H 0.06 0.65 5.84 -51.93 -0.30 0.35 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -31.72 375.68 -10.35 -42.07 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.38 Total: 2.84 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.46 Total: -14.11 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.39 Total: -61.41 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.89 Total: -45.40 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 54.25 SS G_CDS: -0.64 Total: 53.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.72 -10.35 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds