Wall clock time and date at job start Tue Mar 31 2020 12:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.46493 * 120.00108 * 85.00348 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99903 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 S 1.65601 * 119.99800 * 264.99849 * 3 2 1 14 14 O 1.42102 * 106.40315 * 23.54410 * 13 3 2 15 15 O 1.42106 * 106.39789 * 156.46091 * 13 3 2 16 16 N 1.65595 * 107.22339 * 269.99884 * 13 3 2 17 17 C 1.46498 * 119.99939 * 64.99896 * 16 13 3 18 18 H 1.09003 * 109.46777 * 25.00325 * 17 16 13 19 19 C 1.53003 * 109.47464 * 265.00784 * 17 16 13 20 20 C 1.53004 * 109.47216 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47045 * 59.99401 * 20 19 17 22 22 H 1.09004 * 109.46981 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47252 * 60.00446 * 21 20 19 24 24 C 1.53003 * 109.47496 * 299.99812 * 21 20 19 25 25 C 1.53001 * 109.46491 * 60.00472 * 24 21 20 26 26 H 1.08991 * 109.47729 * 60.00226 * 25 24 21 27 27 C 1.53006 * 109.46732 * 180.02562 * 25 24 21 28 28 H 1.09002 * 109.46962 * 299.99665 * 1 2 3 29 29 H 1.09004 * 109.47194 * 59.99737 * 1 2 3 30 30 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47329 * 240.00207 * 2 1 3 32 32 H 1.08997 * 109.47464 * 119.99999 * 2 1 3 33 33 H 1.09001 * 109.47786 * 155.00176 * 4 3 2 34 34 H 1.09006 * 109.47401 * 34.99761 * 4 3 2 35 35 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 36 36 H 0.97000 * 120.00397 * 245.00413 * 16 13 3 37 37 H 1.09003 * 109.46749 * 299.99558 * 19 17 16 38 38 H 1.08998 * 109.47441 * 59.99627 * 19 17 16 39 39 H 1.08996 * 109.47121 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.46825 * 299.99420 * 20 19 17 41 41 H 1.08996 * 109.47215 * 59.99563 * 23 21 20 42 42 H 1.08998 * 109.47163 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.46984 * 299.99822 * 23 21 20 44 44 H 1.08995 * 109.46997 * 179.97438 * 24 21 20 45 45 H 1.08995 * 109.47016 * 300.00734 * 24 21 20 46 46 H 1.09004 * 109.46873 * 179.97438 * 27 25 24 47 47 H 1.08998 * 109.46980 * 299.99665 * 27 25 24 48 48 H 1.09003 * 109.47366 * 59.99830 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6356 6 1 -0.0226 2.5949 0.9943 7 6 0.7224 3.4672 2.7944 8 7 1.7681 3.6308 3.5751 9 14 -0.9164 4.2365 3.2548 10 1 -1.0045 5.5996 2.6721 11 1 -2.0225 3.3992 2.7250 12 1 -1.0249 4.3223 4.7334 13 16 2.4121 2.1201 -1.4287 14 8 1.6867 1.4415 -2.4448 15 8 2.3056 3.5186 -1.1998 16 7 4.0143 1.8137 -1.7138 17 6 4.4657 0.4414 -1.9569 18 1 3.6372 -0.1497 -2.3473 19 6 4.9574 -0.1738 -0.6452 20 6 5.4294 -1.6069 -0.8992 21 6 6.5718 -1.5947 -1.9168 22 1 6.9078 -2.6157 -2.0981 23 6 7.7343 -0.7647 -1.3685 24 6 6.0800 -0.9796 -3.2286 25 6 5.6082 0.4534 -2.9745 26 1 6.4363 1.0448 -2.5839 27 6 5.1158 1.0683 -4.2861 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.9080 2.8918 1.1513 34 1 2.4690 1.4182 2.0480 35 1 2.6191 3.2316 3.3358 36 1 4.6540 2.5429 -1.7198 37 1 5.7859 0.4173 -0.2548 38 1 4.1436 -0.1820 0.0799 39 1 5.7801 -2.0449 0.0352 40 1 4.6012 -2.1982 -1.2898 41 1 8.0847 -1.2029 -0.4341 42 1 8.5484 -0.7564 -2.0933 43 1 7.3981 0.2563 -1.1875 44 1 6.8941 -0.9706 -3.9533 45 1 5.2519 -1.5710 -3.6191 46 1 4.7792 2.0892 -4.1050 47 1 5.9294 1.0769 -5.0114 48 1 4.2875 0.4769 -4.6763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337086488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:49 Heat of formation + Delta-G solvation = -133.313920 kcal Electronic energy + Delta-G solvation = -27478.179185 eV Core-core repulsion = 23885.496580 eV Total energy + Delta-G solvation = -3592.682605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60164 -38.33312 -37.88610 -36.90815 -35.82515 -34.87856 -33.43824 -31.40661 -30.96451 -28.24019 -27.50044 -26.91385 -24.78203 -23.55418 -23.21143 -22.13122 -20.68527 -19.63795 -19.24057 -18.51028 -18.25008 -17.49422 -16.64261 -15.99687 -15.74563 -15.66991 -15.46848 -15.29041 -14.92773 -14.79791 -14.61932 -14.12772 -13.94998 -13.68495 -13.66441 -13.52845 -13.23098 -13.17761 -13.05297 -12.93031 -12.89652 -12.81893 -12.67382 -12.54545 -12.37301 -12.23513 -11.96881 -11.93580 -11.73995 -11.64257 -11.35861 -11.21913 -11.03961 -10.97690 -10.53536 -10.32539 -9.77701 -8.60746 -6.33226 -0.37364 1.51962 1.59777 1.77180 1.97837 2.54174 2.60782 3.17132 3.38039 3.61957 3.73840 3.84354 3.87366 4.14797 4.19685 4.24939 4.39325 4.40095 4.42954 4.52819 4.54458 4.59895 4.62845 4.75148 4.80688 4.87067 4.90552 4.92277 4.98500 5.03275 5.04677 5.11352 5.20811 5.22439 5.25402 5.33933 5.37355 5.43404 5.48488 5.49289 5.54453 5.67276 5.75314 5.91944 6.09351 6.28020 6.59122 7.41434 8.76575 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.004319 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.213214 B = 6482.082763 C = 6807.445971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.990 5.990 4 C 0.264 3.736 5 C -0.612 4.612 6 H 0.047 0.953 7 C -0.028 4.028 8 N -0.935 5.935 9 Si 1.107 2.893 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.277 1.277 13 S 2.793 3.207 14 O -1.005 7.005 15 O -1.018 7.018 16 N -1.114 6.114 17 C 0.153 3.847 18 H 0.081 0.919 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.090 4.090 22 H 0.084 0.916 23 C -0.152 4.152 24 C -0.104 4.104 25 C -0.090 4.090 26 H 0.085 0.915 27 C -0.152 4.152 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -13.674 -12.436 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.830 5.830 4 C 0.140 3.860 5 C -0.651 4.651 6 H 0.066 0.934 7 C -0.227 4.227 8 N -0.573 5.573 9 Si 0.930 3.070 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.202 1.202 13 S 2.802 3.198 14 O -0.988 6.988 15 O -1.002 7.002 16 N -0.875 5.875 17 C 0.046 3.954 18 H 0.099 0.901 19 C -0.184 4.184 20 C -0.148 4.148 21 C -0.108 4.108 22 H 0.102 0.898 23 C -0.209 4.209 24 C -0.142 4.142 25 C -0.110 4.110 26 H 0.104 0.896 27 C -0.209 4.209 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.076 -12.406 -11.861 19.903 hybrid contribution 1.105 -0.284 -0.655 1.315 sum 11.180 -12.689 -12.516 21.040 Atomic orbital electron populations 1.22232 0.96735 1.02554 1.01488 1.21255 0.94667 0.80877 1.02955 1.57472 1.79362 1.23849 1.22346 1.18665 0.95750 0.90246 0.81343 1.22691 0.97495 1.35283 1.09619 0.93436 1.27032 1.06577 0.95625 0.93448 1.70895 1.01737 1.44820 1.39799 0.83060 0.71458 0.76097 0.76413 1.20854 1.19576 1.20188 1.01331 0.73816 0.71922 0.72760 1.93515 1.71663 1.76311 1.57350 1.93566 1.86571 1.33809 1.86212 1.55894 1.27685 1.15958 1.87989 1.21057 0.98197 0.80052 0.96066 0.90142 1.22187 1.01699 0.97761 0.96712 1.21547 0.98551 0.94890 0.99850 1.21123 0.95068 1.00098 0.94512 0.89785 1.21946 0.97784 1.00200 1.00971 1.21620 1.01352 0.93738 0.97528 1.21400 0.96611 0.98489 0.94465 0.89637 1.21869 1.01536 1.00383 0.97126 0.93038 0.94417 0.89424 0.89492 0.89681 0.97574 0.95788 0.93196 0.74567 0.90975 0.92295 0.91105 0.91290 0.92818 0.92052 0.92830 0.90092 0.91483 0.93812 0.90779 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 9.83 71.98 0.71 -5.27 16 2 C 0.13 4.25 4.95 86.38 0.43 4.67 16 3 N -0.99 -40.16 2.52 -519.85 -1.31 -41.47 16 4 C 0.26 13.09 4.43 85.64 0.38 13.47 16 5 C -0.61 -34.55 8.41 25.60 0.22 -34.33 16 6 H 0.05 2.73 6.89 -2.91 -0.02 2.71 16 7 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 8 N -0.93 -56.52 13.65 21.45 0.29 -56.22 16 9 Si 1.11 51.71 29.90 68.60 2.05 53.76 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 S 2.79 111.38 6.03 -56.49 -0.34 111.04 16 14 O -1.01 -41.46 16.45 -128.00 -2.11 -43.56 16 15 O -1.02 -50.69 17.11 -128.00 -2.19 -52.88 16 16 N -1.11 -32.06 4.76 -169.38 -0.81 -32.87 16 17 C 0.15 3.51 2.26 44.99 0.10 3.61 16 18 H 0.08 1.96 7.13 -2.39 -0.02 1.95 16 19 C -0.14 -3.08 5.25 30.60 0.16 -2.92 16 20 C -0.11 -1.78 5.45 30.60 0.17 -1.61 16 21 C -0.09 -1.19 3.19 -10.79 -0.03 -1.22 16 22 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 23 C -0.15 -2.05 8.50 71.98 0.61 -1.43 16 24 C -0.10 -1.43 4.73 30.60 0.14 -1.29 16 25 C -0.09 -1.59 2.08 -10.79 -0.02 -1.61 16 26 H 0.09 1.42 6.43 -2.39 -0.02 1.41 16 27 C -0.15 -2.88 9.03 71.98 0.65 -2.23 16 28 H 0.05 2.08 6.59 -2.39 -0.02 2.06 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.42 7.24 -2.38 -0.02 2.41 16 32 H 0.08 2.57 8.00 -2.39 -0.02 2.55 16 33 H 0.01 0.34 7.48 -2.39 -0.02 0.32 16 34 H 0.02 1.19 7.87 -2.38 -0.02 1.17 16 35 H 0.26 15.49 7.22 -92.71 -0.67 14.82 16 36 H 0.42 10.79 8.84 -96.75 -0.85 9.94 16 37 H 0.07 1.54 6.43 -2.39 -0.02 1.52 16 38 H 0.06 1.46 6.60 -2.39 -0.02 1.44 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.82 4.81 -2.39 -0.01 0.81 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 0.94 7.60 -2.39 -0.02 0.92 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.31 374.02 -0.26 -72.57 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.18 Total: 20.97 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.97 Total: -31.33 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -1.83 Total: -130.57 kcal Atomic # 8 Polarization: -92.15 SS G_CDS: -4.30 Total: -96.44 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Atomic # 16 Polarization: 111.38 SS G_CDS: -0.34 Total: 111.04 kcal Total: -72.31 -0.26 -72.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.748 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds