Wall clock time and date at job start Tue Mar 31 2020 12:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46652 * 2 1 4 4 C 1.46503 * 119.99784 * 276.57889 * 3 2 1 5 5 C 1.50709 * 109.46939 * 277.47145 * 4 3 2 6 6 H 1.07997 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99681 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00302 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99473 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47214 * 60.00266 * 9 7 5 11 11 H 1.48506 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47384 * 300.00110 * 9 7 5 13 13 S 1.65602 * 120.00177 * 96.57767 * 3 2 1 14 14 O 1.42105 * 106.40067 * 167.22949 * 13 3 2 15 15 O 1.42100 * 106.39971 * 34.31140 * 13 3 2 16 16 N 1.65595 * 107.21684 * 280.77045 * 13 3 2 17 17 C 1.50167 * 120.53932 * 94.68746 * 16 13 3 18 18 C 1.46239 * 107.53105 * 109.60548 * 17 16 13 19 19 H 1.08996 * 108.52498 * 297.16803 * 18 17 16 20 20 C 1.53001 * 108.51989 * 179.49664 * 18 17 16 21 21 C 1.52486 * 114.23542 * 58.41086 * 18 17 16 22 22 C 1.50122 * 105.42937 * 270.53556 * 21 18 17 23 23 C 1.54848 * 110.77887 * 97.73018 * 22 21 18 24 24 C 1.43441 * 120.53735 * 274.70786 * 16 13 3 25 25 H 1.08995 * 108.00136 * 149.95274 * 24 16 13 26 26 C 1.53000 * 108.15763 * 33.26136 * 24 16 13 27 27 H 1.08996 * 109.46694 * 185.05118 * 1 2 3 28 28 H 1.08997 * 109.47335 * 305.04746 * 1 2 3 29 29 H 1.08992 * 109.47367 * 65.05376 * 1 2 3 30 30 H 1.08996 * 109.47143 * 240.00205 * 2 1 3 31 31 H 1.08990 * 109.47309 * 119.99571 * 2 1 3 32 32 H 1.08998 * 109.47342 * 37.47173 * 4 3 2 33 33 H 1.09005 * 109.47353 * 157.47812 * 4 3 2 34 34 H 0.96992 * 119.99912 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.84794 * 229.12189 * 17 16 13 36 36 H 1.09009 * 109.84312 * 350.03925 * 17 16 13 37 37 H 1.09000 * 109.47039 * 60.00077 * 20 18 17 38 38 H 1.09005 * 109.47239 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.47271 * 300.00076 * 20 18 17 40 40 H 1.09009 * 110.18385 * 151.59098 * 21 18 17 41 41 H 1.09004 * 110.29815 * 29.55002 * 21 18 17 42 42 H 1.08998 * 109.20915 * 337.41492 * 22 21 18 43 43 H 1.08996 * 109.21178 * 218.05146 * 22 21 18 44 44 H 1.09006 * 109.35678 * 81.36055 * 23 22 21 45 45 H 1.08996 * 109.36111 * 200.94859 * 23 22 21 46 46 H 1.09006 * 109.47344 * 286.10061 * 26 24 16 47 47 H 1.08999 * 109.47325 * 46.09721 * 26 24 16 48 48 H 1.08997 * 109.47578 * 166.10093 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1253 2.1203 -1.2604 5 6 3.4183 1.7600 -1.9458 6 1 4.0925 1.0511 -1.4884 7 6 3.7398 2.3346 -3.1572 8 7 2.9185 3.1975 -3.7144 9 14 5.3420 1.8874 -4.0069 10 1 5.3648 0.4287 -4.2845 11 1 5.4507 2.6366 -5.2845 12 1 6.4847 2.2417 -3.1272 13 16 2.4491 2.1073 1.4247 14 8 3.1476 3.2943 1.0749 15 8 3.0090 1.0879 2.2411 16 7 1.0519 2.5896 2.1712 17 6 0.3930 1.7129 3.1970 18 6 0.5673 2.3526 4.5005 19 1 1.6334 2.4026 4.7219 20 6 -0.1079 1.4829 5.5629 21 6 -0.0130 3.7599 4.5897 22 6 1.0956 4.6770 4.1615 23 6 0.9397 5.0689 2.6715 24 6 0.4510 3.8514 1.8481 25 1 -0.6259 3.7571 1.9873 26 6 0.7140 4.1398 0.3687 27 1 -0.3632 -1.0237 0.0905 28 1 -0.3634 0.5901 0.8413 29 1 -0.3634 0.4334 -0.9317 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 1.2869 1.8602 -1.9065 33 1 2.1084 3.1910 -1.0565 34 1 3.1449 3.6019 -4.5663 35 1 -0.6690 1.6141 2.9723 36 1 0.8634 0.7296 3.2005 37 1 0.3519 0.4946 5.5692 38 1 0.0125 1.9463 6.5421 39 1 -1.1694 1.3882 5.3341 40 1 -0.3098 3.9800 5.6153 41 1 -0.8663 3.8603 3.9188 42 1 2.0520 4.1733 4.3015 43 1 1.0721 5.5784 4.7737 44 1 0.2147 5.8783 2.5848 45 1 1.9014 5.4049 2.2838 46 1 1.7579 4.4232 0.2337 47 1 0.5010 3.2469 -0.2190 48 1 0.0705 4.9548 0.0374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337088545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:07 Heat of formation + Delta-G solvation = -75.283857 kcal Electronic energy + Delta-G solvation = -28220.380472 eV Core-core repulsion = 24630.214239 eV Total energy + Delta-G solvation = -3590.166233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.40094 -36.89395 -36.13556 -35.09760 -34.66386 -33.15762 -32.63206 -30.17068 -29.28974 -26.60383 -26.19757 -25.52752 -23.44069 -22.73616 -21.62077 -20.77173 -20.08054 -17.89765 -16.94611 -16.63995 -16.33153 -16.11639 -15.20039 -14.97947 -14.82151 -14.41794 -14.18398 -13.93578 -13.39894 -13.24945 -12.92695 -12.70162 -12.56248 -12.42986 -12.31546 -12.05499 -12.00035 -11.97930 -11.74542 -11.47496 -11.34260 -11.21521 -11.09991 -10.98961 -10.89121 -10.84871 -10.56540 -10.44729 -10.38059 -10.29392 -10.21932 -9.96438 -9.92238 -9.55589 -8.75566 -8.39204 -8.00830 -6.03863 -4.07439 1.26584 3.34496 3.38089 3.42414 3.49084 4.08162 4.46004 4.60913 4.76252 4.86399 4.99226 5.04788 5.14405 5.23356 5.30475 5.31109 5.43254 5.54660 5.55864 5.61091 5.66899 5.72086 5.75022 5.76523 5.78091 5.89573 5.98610 6.03216 6.04573 6.09239 6.21315 6.27661 6.30139 6.34521 6.38248 6.39216 6.53704 6.62175 6.67829 6.91032 7.03634 7.32420 7.50489 7.69786 7.93833 8.26056 8.94728 9.57217 11.04377 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.004949 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.474948 B = 5655.850207 C = 6088.586047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.782 3.218 14 O -0.964 6.964 15 O -1.001 7.001 16 N -1.003 6.003 17 C 0.133 3.867 18 C -0.114 4.114 19 H 0.073 0.927 20 C -0.149 4.149 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.135 4.135 24 C 0.164 3.836 25 H 0.070 0.930 26 C -0.226 4.226 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 -0.846 14.684 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 S 2.792 3.208 14 O -0.948 6.948 15 O -0.985 6.985 16 N -0.840 5.840 17 C 0.008 3.992 18 C -0.133 4.133 19 H 0.092 0.908 20 C -0.207 4.207 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.175 4.175 24 C 0.056 3.944 25 H 0.088 0.912 26 C -0.284 4.284 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.673 -0.613 14.818 17.707 hybrid contribution 0.450 -0.226 -0.766 0.917 sum -9.224 -0.838 14.052 16.829 Atomic orbital electron populations 1.22268 0.97225 1.01121 1.02406 1.21088 0.93052 0.83443 1.03184 1.57753 1.80933 1.21182 1.23391 1.19379 0.97099 0.92572 0.78798 1.21497 1.04936 1.25735 1.04944 0.92413 1.24901 0.97027 0.94862 0.97058 1.69901 1.36463 1.28796 1.18165 0.86624 0.84038 0.78478 0.78703 1.20222 1.21174 1.20079 1.02006 0.73098 0.73192 0.72520 1.93557 1.70652 1.47263 1.83349 1.93495 1.75974 1.59878 1.69111 1.58460 1.46271 1.25557 1.53691 1.20784 0.98356 0.93492 0.86529 1.20513 1.01282 0.95894 0.95652 0.90840 1.21954 1.00539 0.99811 0.98437 1.21106 0.98498 0.94114 1.00982 1.21536 0.98845 0.99185 0.96164 1.22770 1.02757 0.97274 0.94681 1.20203 0.97184 0.82791 0.94241 0.91231 1.23354 1.06494 1.04063 0.94488 0.92463 0.92982 0.92012 0.89853 0.91221 0.95050 0.92196 0.92696 0.90997 0.89219 0.92565 0.92575 0.92619 0.91783 0.91109 0.92169 0.92656 0.91227 0.90626 0.87607 0.90235 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.23 37.16 0.38 -2.00 16 2 C 0.12 2.07 6.40 -4.04 -0.03 2.04 16 3 N -0.99 -20.47 2.38 -115.66 -0.27 -20.75 16 4 C 0.24 5.97 3.53 -5.19 -0.02 5.96 16 5 C -0.53 -14.85 9.36 -34.43 -0.32 -15.18 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 S 2.78 56.17 5.40 -107.50 -0.58 55.59 16 14 O -0.96 -22.64 13.91 -57.17 -0.80 -23.43 16 15 O -1.00 -21.54 15.62 -57.17 -0.89 -22.44 16 16 N -1.00 -15.21 2.85 -108.90 -0.31 -15.52 16 17 C 0.13 1.61 4.30 -5.20 -0.02 1.59 16 18 C -0.11 -1.25 2.22 -94.10 -0.21 -1.46 16 19 H 0.07 0.95 6.93 -51.93 -0.36 0.59 16 20 C -0.15 -1.30 8.91 37.16 0.33 -0.97 16 21 C -0.11 -1.10 5.18 -28.43 -0.15 -1.25 16 22 C -0.12 -1.40 5.65 -27.19 -0.15 -1.56 16 23 C -0.14 -1.77 5.72 -24.76 -0.14 -1.91 16 24 C 0.16 2.30 2.06 -68.55 -0.14 2.16 16 25 H 0.07 0.82 6.87 -51.93 -0.36 0.47 16 26 C -0.23 -3.78 6.76 37.16 0.25 -3.52 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.66 7.30 -51.93 -0.38 0.28 16 29 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 31 H 0.07 1.14 7.09 -51.93 -0.37 0.77 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.06 1.54 4.34 -51.93 -0.23 1.31 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.09 1.14 7.17 -51.92 -0.37 0.77 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 7.97 -51.93 -0.41 0.03 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.55 7.72 -51.92 -0.40 0.15 16 41 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16 42 H 0.06 0.80 6.83 -51.93 -0.35 0.45 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 46 H 0.11 2.13 4.61 -51.93 -0.24 1.89 16 47 H 0.08 1.42 5.26 -51.93 -0.27 1.14 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -31.80 363.68 -10.22 -42.01 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.24 Total: 1.73 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.32 Total: -14.39 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.15 Total: -61.35 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.69 Total: -45.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 56.17 SS G_CDS: -0.58 Total: 55.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.80 -10.22 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.272 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds