Wall clock time and date at job start Tue Mar 31 2020 12:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46652 * 2 1 4 4 C 1.46503 * 119.99784 * 276.57889 * 3 2 1 5 5 C 1.50709 * 109.46939 * 277.47145 * 4 3 2 6 6 H 1.07997 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99681 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00302 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99473 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47214 * 60.00266 * 9 7 5 11 11 H 1.48506 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47384 * 300.00110 * 9 7 5 13 13 S 1.65602 * 120.00177 * 96.57767 * 3 2 1 14 14 O 1.42105 * 106.40067 * 167.22949 * 13 3 2 15 15 O 1.42100 * 106.39971 * 34.31140 * 13 3 2 16 16 N 1.65595 * 107.21684 * 280.77045 * 13 3 2 17 17 C 1.50167 * 120.53932 * 94.68746 * 16 13 3 18 18 C 1.46239 * 107.53105 * 109.60548 * 17 16 13 19 19 H 1.08996 * 108.52498 * 297.16803 * 18 17 16 20 20 C 1.53001 * 108.51989 * 179.49664 * 18 17 16 21 21 C 1.52486 * 114.23542 * 58.41086 * 18 17 16 22 22 C 1.50122 * 105.42937 * 270.53556 * 21 18 17 23 23 C 1.54848 * 110.77887 * 97.73018 * 22 21 18 24 24 C 1.43441 * 120.53735 * 274.70786 * 16 13 3 25 25 H 1.08995 * 108.00136 * 149.95274 * 24 16 13 26 26 C 1.53000 * 108.15763 * 33.26136 * 24 16 13 27 27 H 1.08996 * 109.46694 * 185.05118 * 1 2 3 28 28 H 1.08997 * 109.47335 * 305.04746 * 1 2 3 29 29 H 1.08992 * 109.47367 * 65.05376 * 1 2 3 30 30 H 1.08996 * 109.47143 * 240.00205 * 2 1 3 31 31 H 1.08990 * 109.47309 * 119.99571 * 2 1 3 32 32 H 1.08998 * 109.47342 * 37.47173 * 4 3 2 33 33 H 1.09005 * 109.47353 * 157.47812 * 4 3 2 34 34 H 0.96992 * 119.99912 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.84794 * 229.12189 * 17 16 13 36 36 H 1.09009 * 109.84312 * 350.03925 * 17 16 13 37 37 H 1.09000 * 109.47039 * 60.00077 * 20 18 17 38 38 H 1.09005 * 109.47239 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.47271 * 300.00076 * 20 18 17 40 40 H 1.09009 * 110.18385 * 151.59098 * 21 18 17 41 41 H 1.09004 * 110.29815 * 29.55002 * 21 18 17 42 42 H 1.08998 * 109.20915 * 337.41492 * 22 21 18 43 43 H 1.08996 * 109.21178 * 218.05146 * 22 21 18 44 44 H 1.09006 * 109.35678 * 81.36055 * 23 22 21 45 45 H 1.08996 * 109.36111 * 200.94859 * 23 22 21 46 46 H 1.09006 * 109.47344 * 286.10061 * 26 24 16 47 47 H 1.08999 * 109.47325 * 46.09721 * 26 24 16 48 48 H 1.08997 * 109.47578 * 166.10093 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1253 2.1203 -1.2604 5 6 3.4183 1.7600 -1.9458 6 1 4.0925 1.0511 -1.4884 7 6 3.7398 2.3346 -3.1572 8 7 2.9185 3.1975 -3.7144 9 14 5.3420 1.8874 -4.0069 10 1 5.3648 0.4287 -4.2845 11 1 5.4507 2.6366 -5.2845 12 1 6.4847 2.2417 -3.1272 13 16 2.4491 2.1073 1.4247 14 8 3.1476 3.2943 1.0749 15 8 3.0090 1.0879 2.2411 16 7 1.0519 2.5896 2.1712 17 6 0.3930 1.7129 3.1970 18 6 0.5673 2.3526 4.5005 19 1 1.6334 2.4026 4.7219 20 6 -0.1079 1.4829 5.5629 21 6 -0.0130 3.7599 4.5897 22 6 1.0956 4.6770 4.1615 23 6 0.9397 5.0689 2.6715 24 6 0.4510 3.8514 1.8481 25 1 -0.6259 3.7571 1.9873 26 6 0.7140 4.1398 0.3687 27 1 -0.3632 -1.0237 0.0905 28 1 -0.3634 0.5901 0.8413 29 1 -0.3634 0.4334 -0.9317 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 1.2869 1.8602 -1.9065 33 1 2.1084 3.1910 -1.0565 34 1 3.1449 3.6019 -4.5663 35 1 -0.6690 1.6141 2.9723 36 1 0.8634 0.7296 3.2005 37 1 0.3519 0.4946 5.5692 38 1 0.0125 1.9463 6.5421 39 1 -1.1694 1.3882 5.3341 40 1 -0.3098 3.9800 5.6153 41 1 -0.8663 3.8603 3.9188 42 1 2.0520 4.1733 4.3015 43 1 1.0721 5.5784 4.7737 44 1 0.2147 5.8783 2.5848 45 1 1.9014 5.4049 2.2838 46 1 1.7579 4.4232 0.2337 47 1 0.5010 3.2469 -0.2190 48 1 0.0705 4.9548 0.0374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337088545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:06 Heat of formation + Delta-G solvation = -95.776648 kcal Electronic energy + Delta-G solvation = -28221.269106 eV Core-core repulsion = 24630.214239 eV Total energy + Delta-G solvation = -3591.054867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.41339 -38.52418 -37.75453 -36.79618 -35.77265 -34.71118 -34.16773 -31.65489 -30.42737 -28.48618 -27.18147 -26.52844 -25.00674 -24.10630 -23.15782 -21.78152 -21.05658 -19.51567 -18.52189 -18.45484 -17.83130 -17.55866 -16.74866 -16.20621 -15.96415 -15.86623 -15.42168 -15.26453 -14.79078 -14.72573 -14.25704 -14.02722 -13.78974 -13.63124 -13.54653 -13.37949 -13.36746 -13.20286 -13.08864 -13.04295 -12.80763 -12.75890 -12.61859 -12.41837 -12.34987 -12.21405 -12.14000 -11.93201 -11.67550 -11.60914 -11.40749 -11.26374 -11.11097 -11.06979 -10.54828 -9.94859 -9.72750 -8.19127 -6.30349 -0.29809 1.36865 1.40007 1.47121 2.07420 2.38791 2.58469 3.11389 3.41698 3.66022 3.76319 3.96029 4.02702 4.11427 4.13111 4.22884 4.32589 4.46809 4.50009 4.57231 4.65282 4.69869 4.71493 4.76416 4.81682 4.87269 4.93686 5.04011 5.04434 5.09446 5.12935 5.18979 5.25426 5.26632 5.30529 5.42369 5.43456 5.47272 5.51344 5.53588 5.56729 5.60940 5.76687 5.83963 6.08303 6.16767 6.77808 7.37489 8.87605 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.004949 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.474948 B = 5655.850207 C = 6088.586047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.555 4.555 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.279 1.279 13 S 2.788 3.212 14 O -1.007 7.007 15 O -1.021 7.021 16 N -0.992 5.992 17 C 0.126 3.874 18 C -0.117 4.117 19 H 0.045 0.955 20 C -0.143 4.143 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.136 4.136 24 C 0.163 3.837 25 H 0.110 0.890 26 C -0.225 4.225 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.022 0.978 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.027 -1.272 16.184 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.838 5.838 4 C 0.138 3.862 5 C -0.595 4.595 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.205 1.205 13 S 2.799 3.201 14 O -0.990 6.990 15 O -1.004 7.004 16 N -0.832 5.832 17 C 0.003 3.997 18 C -0.137 4.137 19 H 0.064 0.936 20 C -0.202 4.202 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.175 4.175 24 C 0.056 3.944 25 H 0.128 0.872 26 C -0.283 4.283 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.151 -1.072 16.326 20.380 hybrid contribution 1.209 -0.083 -1.166 1.682 sum -10.942 -1.155 15.160 18.732 Atomic orbital electron populations 1.22175 0.94052 1.03304 1.02396 1.21330 0.95752 0.81668 1.02872 1.57653 1.81541 1.22391 1.22180 1.18917 0.95169 0.92185 0.79922 1.21867 1.06239 1.25699 1.05664 0.93638 1.25661 1.00141 0.94812 0.97729 1.69987 1.37918 1.29421 1.18545 0.85736 0.79953 0.78919 0.77879 1.18995 1.19924 1.20513 1.01523 0.73942 0.72248 0.72357 1.93512 1.72771 1.48761 1.84004 1.93454 1.77180 1.60509 1.69305 1.58096 1.45007 1.26455 1.53665 1.21162 0.99849 0.92642 0.86031 1.20503 1.00151 0.97308 0.95696 0.93649 1.21906 1.01332 0.99025 0.97891 1.21116 0.97883 0.92402 1.02587 1.21548 0.98518 1.00258 0.95366 1.22788 1.01814 0.97579 0.95368 1.20403 0.99106 0.82423 0.92451 0.87209 1.23260 1.04318 1.04095 0.96658 0.89389 0.91406 0.93276 0.91408 0.90305 0.96028 0.93596 0.92419 0.87359 0.89935 0.92984 0.91666 0.90602 0.89662 0.89593 0.94843 0.90947 0.88389 0.94022 0.91648 0.91641 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.23 71.98 0.74 -3.45 16 2 C 0.11 3.81 6.40 86.38 0.55 4.37 16 3 N -1.00 -42.37 2.38 -519.83 -1.24 -43.61 16 4 C 0.26 13.38 3.53 85.64 0.30 13.69 16 5 C -0.56 -32.18 9.36 25.60 0.24 -31.94 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.02 0.95 5.46 84.66 0.46 1.41 16 8 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 9 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 S 2.79 116.10 5.40 -56.49 -0.30 115.79 16 14 O -1.01 -50.13 13.91 -128.00 -1.78 -51.91 16 15 O -1.02 -45.08 15.62 -128.00 -2.00 -47.08 16 16 N -0.99 -29.20 2.85 -498.46 -1.42 -30.62 16 17 C 0.13 2.73 4.30 83.58 0.36 3.09 16 18 C -0.12 -2.28 2.22 -13.05 -0.03 -2.31 16 19 H 0.05 1.15 6.93 -2.39 -0.02 1.13 16 20 C -0.14 -1.99 8.91 71.98 0.64 -1.35 16 21 C -0.10 -1.68 5.18 29.50 0.15 -1.53 16 22 C -0.12 -2.59 5.65 30.30 0.17 -2.42 16 23 C -0.14 -3.40 5.72 31.87 0.18 -3.21 16 24 C 0.16 4.33 2.06 46.21 0.10 4.42 16 25 H 0.11 2.12 6.87 -2.39 -0.02 2.10 16 26 C -0.23 -7.59 6.76 71.98 0.49 -7.10 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.53 7.30 -2.39 -0.02 1.52 16 29 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 31 H 0.08 2.57 7.09 -2.39 -0.02 2.56 16 32 H 0.02 1.13 8.08 -2.39 -0.02 1.12 16 33 H 0.05 2.50 4.34 -2.38 -0.01 2.49 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 36 H 0.08 1.94 7.17 -2.38 -0.02 1.92 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.81 7.97 -2.38 -0.02 0.79 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.08 7.72 -2.38 -0.02 1.06 16 41 H 0.09 1.19 6.28 -2.38 -0.01 1.17 16 42 H 0.03 0.90 6.83 -2.39 -0.02 0.88 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.04 1.32 7.87 -2.39 -0.02 1.30 16 46 H 0.06 2.79 4.61 -2.38 -0.01 2.78 16 47 H 0.06 2.37 5.26 -2.39 -0.01 2.35 16 48 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.67 363.68 0.85 -71.82 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.93 Total: 18.44 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.35 Total: -26.33 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -2.37 Total: -128.16 kcal Atomic # 8 Polarization: -95.20 SS G_CDS: -3.78 Total: -98.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 116.10 SS G_CDS: -0.30 Total: 115.79 kcal Total: -72.67 0.85 -71.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.959 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds