Wall clock time and date at job start Tue Mar 31 2020 12:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47546 * 2 1 4 4 C 1.46505 * 119.99454 * 275.00105 * 3 2 1 5 5 C 1.50702 * 109.46970 * 294.88283 * 4 3 2 6 6 H 1.07996 * 119.99810 * 4.97446 * 5 4 3 7 7 C 1.37873 * 119.99677 * 184.96773 * 5 4 3 8 8 N 1.31515 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00198 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46948 * 90.00471 * 9 7 5 11 11 H 1.48507 * 109.47135 * 210.00065 * 9 7 5 12 12 H 1.48494 * 109.47428 * 330.00326 * 9 7 5 13 13 S 1.65590 * 120.00208 * 94.99410 * 3 2 1 14 14 O 1.42104 * 106.40572 * 341.82567 * 13 3 2 15 15 O 1.42102 * 106.40670 * 208.90581 * 13 3 2 16 16 N 1.65600 * 107.21888 * 95.36737 * 13 3 2 17 17 C 1.44588 * 118.64281 * 277.28180 * 16 13 3 18 18 C 1.54865 * 109.60273 * 270.70194 * 17 16 13 19 19 H 1.09000 * 109.32845 * 48.99379 * 18 17 16 20 20 C 1.52998 * 109.33009 * 168.64407 * 18 17 16 21 21 C 1.47089 * 110.32112 * 288.73550 * 18 17 16 22 22 C 1.52563 * 114.32893 * 62.79904 * 21 18 17 23 23 C 1.50884 * 109.36083 * 274.98683 * 22 21 18 24 24 C 1.47602 * 118.64797 * 97.25699 * 16 13 3 25 25 H 1.09004 * 108.94424 * 17.20992 * 24 16 13 26 26 C 1.52996 * 108.87655 * 258.53116 * 24 16 13 27 27 H 1.09008 * 109.46978 * 59.99967 * 1 2 3 28 28 H 1.08993 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47265 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.47265 * 239.99453 * 2 1 3 31 31 H 1.09000 * 109.46831 * 119.99412 * 2 1 3 32 32 H 1.08994 * 109.47148 * 54.89085 * 4 3 2 33 33 H 1.09002 * 109.46451 * 174.88613 * 4 3 2 34 34 H 0.96998 * 120.00213 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.44462 * 30.73783 * 17 16 13 36 36 H 1.08995 * 109.45142 * 150.69129 * 17 16 13 37 37 H 1.08998 * 109.46895 * 59.99551 * 20 18 17 38 38 H 1.08998 * 109.47129 * 180.02562 * 20 18 17 39 39 H 1.09005 * 109.47096 * 299.99922 * 20 18 17 40 40 H 1.09004 * 108.51488 * 184.05463 * 21 18 17 41 41 H 1.09007 * 108.51377 * 301.70072 * 21 18 17 42 42 H 1.09000 * 109.49480 * 155.02341 * 22 21 18 43 43 H 1.09005 * 109.49040 * 34.95220 * 22 21 18 44 44 H 1.09004 * 109.36400 * 331.69966 * 23 22 21 45 45 H 1.08995 * 109.37229 * 212.07596 * 23 22 21 46 46 H 1.09001 * 109.47224 * 292.88613 * 26 24 16 47 47 H 1.09006 * 109.47286 * 52.89158 * 26 24 16 48 48 H 1.09001 * 109.46845 * 172.88737 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.2197 1.4504 -2.1075 6 1 3.6812 0.5324 -1.7751 7 6 3.6012 2.0203 -3.3036 8 7 4.5271 1.4457 -4.0399 9 14 2.8022 3.6077 -3.8789 10 1 3.5766 4.7660 -3.3654 11 1 2.7843 3.6432 -5.3635 12 1 1.4105 3.6758 -3.3654 13 16 2.4122 2.1202 1.4286 14 8 1.7875 1.3643 2.4570 15 8 2.1843 3.5098 1.2378 16 7 4.0445 1.9389 1.6407 17 6 4.5369 0.7019 2.2046 18 6 4.5860 0.8178 3.7481 19 1 3.6344 1.2061 4.1112 20 6 4.8317 -0.5662 4.3523 21 6 5.6698 1.7237 4.1582 22 6 5.5030 3.1617 3.6767 23 6 6.0536 3.2878 2.2776 24 6 4.9368 3.0464 1.2458 25 1 4.3465 3.9571 1.1436 26 6 5.5722 2.7124 -0.1052 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.2086 2.0942 -1.7985 33 1 2.4446 3.1403 -1.0596 34 1 4.7953 1.8463 -4.8816 35 1 3.8726 -0.1151 1.9229 36 1 5.5387 0.5030 1.8240 37 1 5.7799 -0.9595 3.9858 38 1 4.8662 -0.4874 5.4389 39 1 4.0235 -1.2378 4.0626 40 1 5.7245 1.7275 5.2468 41 1 6.6108 1.3370 3.7669 42 1 6.0447 3.8335 4.3425 43 1 4.4451 3.4247 3.6762 44 1 6.8446 2.5519 2.1328 45 1 6.4634 4.2882 2.1391 46 1 6.2460 1.8634 0.0101 47 1 4.7906 2.4612 -0.8223 48 1 6.1329 3.5747 -0.4661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337088549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:12 Heat of formation + Delta-G solvation = -92.473644 kcal Electronic energy + Delta-G solvation = -28305.451856 eV Core-core repulsion = 24714.540218 eV Total energy + Delta-G solvation = -3590.911638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.07633 -36.89178 -36.19661 -35.29542 -34.63646 -33.10132 -32.67175 -30.20834 -29.52827 -27.19578 -26.10656 -25.53300 -23.04846 -22.55648 -21.41696 -20.21739 -20.08544 -18.13715 -17.27996 -17.02224 -16.72505 -16.22944 -15.28834 -14.82225 -14.44796 -14.27550 -14.07338 -13.80552 -13.43207 -13.04360 -12.93123 -12.71439 -12.51792 -12.43006 -12.30971 -12.15956 -11.98752 -11.89755 -11.80163 -11.58108 -11.48714 -11.42923 -11.21307 -11.00640 -10.91767 -10.70928 -10.59703 -10.45990 -10.43045 -10.36801 -10.17687 -10.12915 -9.94554 -9.59025 -8.68945 -8.56974 -8.09659 -6.20196 -4.18685 1.18512 3.22543 3.30366 3.36059 3.40925 3.99557 4.31450 4.69329 4.81163 4.85343 5.00718 5.10965 5.19008 5.22090 5.26404 5.43120 5.46108 5.64922 5.71519 5.74496 5.76383 5.79616 5.82509 5.95119 5.97310 6.04865 6.08023 6.09558 6.15759 6.21483 6.25764 6.30273 6.37896 6.41410 6.48199 6.56324 6.58437 6.64986 6.76348 6.87326 7.03543 7.13648 7.29688 7.41684 7.56830 8.38530 8.84454 9.40252 10.91389 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.006352 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.525449 B = 4407.286771 C = 5224.004043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.986 5.986 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.861 3.139 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.263 1.263 13 S 2.776 3.224 14 O -0.990 6.990 15 O -0.988 6.988 16 N -0.989 5.989 17 C 0.139 3.861 18 C -0.116 4.116 19 H 0.079 0.921 20 C -0.142 4.142 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.119 4.119 24 C 0.143 3.857 25 H 0.095 0.905 26 C -0.184 4.184 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.109 0.891 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -1.210 12.931 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.827 5.827 4 C 0.094 3.906 5 C -0.569 4.569 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.687 3.313 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.786 3.214 14 O -0.974 6.974 15 O -0.972 6.972 16 N -0.826 5.826 17 C 0.012 3.988 18 C -0.136 4.136 19 H 0.097 0.903 20 C -0.200 4.200 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.158 4.158 24 C 0.038 3.962 25 H 0.113 0.887 26 C -0.242 4.242 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.307 -0.743 13.326 13.411 hybrid contribution 0.049 0.618 -0.803 1.015 sum 1.356 -0.125 12.523 12.597 Atomic orbital electron populations 1.22181 0.97054 1.01507 1.02034 1.21042 0.93500 0.82544 1.02716 1.57569 1.78706 1.23255 1.23145 1.19502 0.97914 0.91865 0.81275 1.21274 1.20351 1.11271 1.03997 0.89878 1.24827 0.94469 0.97000 0.96221 1.69882 1.29776 1.39606 1.13442 0.87072 0.81126 0.84680 0.78375 1.19654 1.20995 1.18748 1.02043 0.72996 0.73193 0.73137 1.93540 1.74770 1.73076 1.56049 1.93535 1.84649 1.32412 1.86609 1.57561 1.25816 1.22928 1.76280 1.21130 1.01227 0.84925 0.91520 1.20922 1.00179 0.96050 0.96475 0.90301 1.21765 1.01637 0.96331 1.00269 1.20477 0.98918 0.94955 1.00190 1.21054 1.01512 0.96455 0.96319 1.21765 0.97792 1.01994 0.94295 1.21347 0.91809 0.88662 0.94383 0.88667 1.22568 1.03539 1.00868 0.97267 0.92179 0.92159 0.93005 0.89364 0.91684 0.95409 0.94357 0.92479 0.91127 0.90414 0.92752 0.92812 0.92339 0.92874 0.92303 0.92224 0.92097 0.91424 0.91205 0.93051 0.87252 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.22 5.95 -4.04 -0.02 2.20 16 3 N -0.99 -19.59 2.94 -115.66 -0.34 -19.93 16 4 C 0.22 4.95 4.39 -5.19 -0.02 4.92 16 5 C -0.53 -13.23 6.77 -34.44 -0.23 -13.46 16 6 H 0.08 2.22 7.68 -52.49 -0.40 1.82 16 7 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 8 N -0.89 -24.86 13.96 55.43 0.77 -24.09 16 9 Si 0.86 20.21 27.37 -169.99 -4.65 15.56 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -6.03 6.69 56.52 0.38 -5.65 16 13 S 2.78 53.69 5.89 -107.50 -0.63 53.06 16 14 O -0.99 -19.42 15.17 -57.17 -0.87 -20.28 16 15 O -0.99 -21.63 15.06 -57.17 -0.86 -22.49 16 16 N -0.99 -16.42 2.18 -106.30 -0.23 -16.65 16 17 C 0.14 1.99 4.55 -4.08 -0.02 1.97 16 18 C -0.12 -1.48 2.55 -92.47 -0.24 -1.72 16 19 H 0.08 1.16 7.21 -51.93 -0.37 0.79 16 20 C -0.14 -1.51 9.10 37.16 0.34 -1.17 16 21 C -0.11 -1.24 4.38 -29.79 -0.13 -1.37 16 22 C -0.12 -1.42 5.51 -28.02 -0.15 -1.57 16 23 C -0.12 -1.53 5.08 -27.30 -0.14 -1.67 16 24 C 0.14 2.32 2.76 -66.83 -0.18 2.14 16 25 H 0.10 1.67 6.57 -51.93 -0.34 1.33 16 26 C -0.18 -3.28 9.38 37.16 0.35 -2.93 16 27 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.58 7.26 -51.93 -0.38 1.21 16 31 H 0.06 1.02 6.96 -51.93 -0.36 0.66 16 32 H 0.03 0.64 7.54 -51.93 -0.39 0.25 16 33 H 0.04 0.90 6.14 -51.93 -0.32 0.58 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 36 H 0.08 1.04 7.97 -51.93 -0.41 0.63 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 41 H 0.06 0.63 7.35 -51.93 -0.38 0.25 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 44 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 47 H 0.11 2.35 5.01 -51.93 -0.26 2.09 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -28.87 368.77 -9.98 -38.86 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.56 Total: 3.38 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.17 Total: -12.96 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.20 Total: -60.67 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.73 Total: -42.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.65 Total: 15.56 kcal Atomic # 16 Polarization: 53.69 SS G_CDS: -0.63 Total: 53.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.87 -9.98 -38.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds