Wall clock time and date at job start Tue Mar 31 2020 12:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47546 * 2 1 4 4 C 1.46505 * 119.99454 * 275.00105 * 3 2 1 5 5 C 1.50702 * 109.46970 * 294.88283 * 4 3 2 6 6 H 1.07996 * 119.99810 * 4.97446 * 5 4 3 7 7 C 1.37873 * 119.99677 * 184.96773 * 5 4 3 8 8 N 1.31515 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00198 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46948 * 90.00471 * 9 7 5 11 11 H 1.48507 * 109.47135 * 210.00065 * 9 7 5 12 12 H 1.48494 * 109.47428 * 330.00326 * 9 7 5 13 13 S 1.65590 * 120.00208 * 94.99410 * 3 2 1 14 14 O 1.42104 * 106.40572 * 341.82567 * 13 3 2 15 15 O 1.42102 * 106.40670 * 208.90581 * 13 3 2 16 16 N 1.65600 * 107.21888 * 95.36737 * 13 3 2 17 17 C 1.44588 * 118.64281 * 277.28180 * 16 13 3 18 18 C 1.54865 * 109.60273 * 270.70194 * 17 16 13 19 19 H 1.09000 * 109.32845 * 48.99379 * 18 17 16 20 20 C 1.52998 * 109.33009 * 168.64407 * 18 17 16 21 21 C 1.47089 * 110.32112 * 288.73550 * 18 17 16 22 22 C 1.52563 * 114.32893 * 62.79904 * 21 18 17 23 23 C 1.50884 * 109.36083 * 274.98683 * 22 21 18 24 24 C 1.47602 * 118.64797 * 97.25699 * 16 13 3 25 25 H 1.09004 * 108.94424 * 17.20992 * 24 16 13 26 26 C 1.52996 * 108.87655 * 258.53116 * 24 16 13 27 27 H 1.09008 * 109.46978 * 59.99967 * 1 2 3 28 28 H 1.08993 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47265 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.47265 * 239.99453 * 2 1 3 31 31 H 1.09000 * 109.46831 * 119.99412 * 2 1 3 32 32 H 1.08994 * 109.47148 * 54.89085 * 4 3 2 33 33 H 1.09002 * 109.46451 * 174.88613 * 4 3 2 34 34 H 0.96998 * 120.00213 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.44462 * 30.73783 * 17 16 13 36 36 H 1.08995 * 109.45142 * 150.69129 * 17 16 13 37 37 H 1.08998 * 109.46895 * 59.99551 * 20 18 17 38 38 H 1.08998 * 109.47129 * 180.02562 * 20 18 17 39 39 H 1.09005 * 109.47096 * 299.99922 * 20 18 17 40 40 H 1.09004 * 108.51488 * 184.05463 * 21 18 17 41 41 H 1.09007 * 108.51377 * 301.70072 * 21 18 17 42 42 H 1.09000 * 109.49480 * 155.02341 * 22 21 18 43 43 H 1.09005 * 109.49040 * 34.95220 * 22 21 18 44 44 H 1.09004 * 109.36400 * 331.69966 * 23 22 21 45 45 H 1.08995 * 109.37229 * 212.07596 * 23 22 21 46 46 H 1.09001 * 109.47224 * 292.88613 * 26 24 16 47 47 H 1.09006 * 109.47286 * 52.89158 * 26 24 16 48 48 H 1.09001 * 109.46845 * 172.88737 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.2197 1.4504 -2.1075 6 1 3.6812 0.5324 -1.7751 7 6 3.6012 2.0203 -3.3036 8 7 4.5271 1.4457 -4.0399 9 14 2.8022 3.6077 -3.8789 10 1 3.5766 4.7660 -3.3654 11 1 2.7843 3.6432 -5.3635 12 1 1.4105 3.6758 -3.3654 13 16 2.4122 2.1202 1.4286 14 8 1.7875 1.3643 2.4570 15 8 2.1843 3.5098 1.2378 16 7 4.0445 1.9389 1.6407 17 6 4.5369 0.7019 2.2046 18 6 4.5860 0.8178 3.7481 19 1 3.6344 1.2061 4.1112 20 6 4.8317 -0.5662 4.3523 21 6 5.6698 1.7237 4.1582 22 6 5.5030 3.1617 3.6767 23 6 6.0536 3.2878 2.2776 24 6 4.9368 3.0464 1.2458 25 1 4.3465 3.9571 1.1436 26 6 5.5722 2.7124 -0.1052 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.2086 2.0942 -1.7985 33 1 2.4446 3.1403 -1.0596 34 1 4.7953 1.8463 -4.8816 35 1 3.8726 -0.1151 1.9229 36 1 5.5387 0.5030 1.8240 37 1 5.7799 -0.9595 3.9858 38 1 4.8662 -0.4874 5.4389 39 1 4.0235 -1.2378 4.0626 40 1 5.7245 1.7275 5.2468 41 1 6.6108 1.3370 3.7669 42 1 6.0447 3.8335 4.3425 43 1 4.4451 3.4247 3.6762 44 1 6.8446 2.5519 2.1328 45 1 6.4634 4.2882 2.1391 46 1 6.2460 1.8634 0.0101 47 1 4.7906 2.4612 -0.8223 48 1 6.1329 3.5747 -0.4661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337088549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:11 Heat of formation + Delta-G solvation = -109.712326 kcal Electronic energy + Delta-G solvation = -28306.199381 eV Core-core repulsion = 24714.540218 eV Total energy + Delta-G solvation = -3591.659163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19419 -38.48143 -37.81232 -36.91183 -35.78390 -34.62461 -34.21420 -31.79701 -30.72245 -28.96436 -27.14611 -26.69901 -24.70202 -23.72041 -23.02547 -21.37546 -21.21903 -19.58191 -18.97106 -18.62303 -18.41026 -17.61236 -16.75937 -16.11289 -15.95813 -15.62189 -15.44054 -15.02897 -14.87007 -14.56603 -14.22842 -14.12541 -14.00322 -13.83133 -13.63480 -13.52917 -13.42500 -13.23304 -13.14859 -13.03875 -12.81921 -12.73663 -12.64491 -12.58847 -12.34631 -12.18951 -12.03008 -11.96999 -11.71485 -11.62813 -11.52650 -11.38188 -11.27977 -11.08645 -10.69609 -9.91892 -9.70848 -8.25158 -6.24883 -0.34403 1.34596 1.39828 1.46831 1.92385 2.35270 2.48289 3.09063 3.32161 3.58338 3.86831 3.87180 4.03388 4.07919 4.12224 4.19396 4.33828 4.39982 4.45704 4.57508 4.63336 4.67578 4.73177 4.82065 4.86041 4.88994 4.95527 4.98453 5.02121 5.04899 5.05227 5.09892 5.12683 5.24429 5.35609 5.36316 5.37845 5.40861 5.46060 5.51235 5.52490 5.57080 5.73974 5.80311 5.98695 6.36449 6.77364 7.35884 8.89138 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.006352 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.525449 B = 4407.286771 C = 5224.004043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 N -0.992 5.992 4 C 0.227 3.773 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.035 3.965 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.255 1.255 13 S 2.782 3.218 14 O -0.994 6.994 15 O -1.016 7.016 16 N -0.983 5.983 17 C 0.129 3.871 18 C -0.112 4.112 19 H 0.055 0.945 20 C -0.139 4.139 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.112 4.112 24 C 0.142 3.858 25 H 0.078 0.922 26 C -0.179 4.179 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 -1.334 14.561 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.832 5.832 4 C 0.102 3.898 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.165 4.165 8 N -0.569 5.569 9 Si 0.729 3.271 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.179 1.179 13 S 2.793 3.207 14 O -0.978 6.978 15 O -1.000 7.000 16 N -0.822 5.822 17 C 0.004 3.996 18 C -0.133 4.133 19 H 0.074 0.926 20 C -0.197 4.197 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.151 4.151 24 C 0.037 3.963 25 H 0.096 0.904 26 C -0.238 4.238 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.935 -0.881 14.974 15.124 hybrid contribution -0.131 0.589 -1.252 1.389 sum 1.804 -0.292 13.722 13.844 Atomic orbital electron populations 1.22166 0.95582 1.03324 1.01413 1.21238 0.94804 0.81293 1.03075 1.57579 1.79358 1.24119 1.22159 1.19233 0.96895 0.91537 0.82155 1.21280 1.19910 1.09989 1.03742 0.92276 1.25388 0.95011 0.99467 0.96588 1.69980 1.31573 1.41224 1.14103 0.86359 0.80825 0.81832 0.78060 1.19271 1.20693 1.17863 1.01739 0.73692 0.72431 0.72877 1.93528 1.75442 1.72942 1.55877 1.93491 1.85466 1.34160 1.86922 1.57390 1.24728 1.23954 1.76170 1.21403 1.01613 0.83705 0.92921 1.20888 0.99712 0.97739 0.94932 0.92617 1.21751 1.02176 0.94751 1.01010 1.20477 0.98791 0.94018 1.01256 1.21089 1.00346 0.97673 0.96357 1.21746 0.96537 1.03337 0.93484 1.21406 0.92364 0.87687 0.94854 0.90418 1.22463 1.02502 1.01463 0.97343 0.92919 0.89185 0.93433 0.90314 0.89993 0.95443 0.95143 0.92509 0.91406 0.89206 0.91355 0.91495 0.92835 0.91288 0.90914 0.89956 0.94363 0.90143 0.89631 0.92444 0.90977 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.24 71.98 0.74 -4.28 16 2 C 0.12 4.15 5.95 86.38 0.51 4.67 16 3 N -0.99 -39.61 2.94 -519.83 -1.53 -41.14 16 4 C 0.23 10.37 4.39 85.63 0.38 10.74 16 5 C -0.51 -25.91 6.77 25.60 0.17 -25.73 16 6 H 0.06 3.25 7.68 -2.91 -0.02 3.23 16 7 C 0.04 1.88 5.46 84.65 0.46 2.34 16 8 N -0.93 -52.83 13.96 21.45 0.30 -52.53 16 9 Si 0.90 41.59 27.37 68.60 1.88 43.47 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.25 -11.27 6.69 99.48 0.67 -10.61 16 13 S 2.78 107.92 5.89 -56.49 -0.33 107.58 16 14 O -0.99 -38.63 15.17 -128.00 -1.94 -40.57 16 15 O -1.02 -45.09 15.06 -128.00 -1.93 -47.02 16 16 N -0.98 -32.25 2.18 -490.22 -1.07 -33.32 16 17 C 0.13 3.55 4.55 87.37 0.40 3.94 16 18 C -0.11 -2.65 2.55 -11.99 -0.03 -2.68 16 19 H 0.06 1.58 7.21 -2.39 -0.02 1.57 16 20 C -0.14 -2.60 9.10 71.98 0.65 -1.94 16 21 C -0.11 -2.16 4.38 28.61 0.13 -2.03 16 22 C -0.12 -2.59 5.51 29.76 0.16 -2.43 16 23 C -0.11 -2.62 5.08 30.23 0.15 -2.47 16 24 C 0.14 4.52 2.76 45.10 0.12 4.64 16 25 H 0.08 2.75 6.57 -2.38 -0.02 2.73 16 26 C -0.18 -6.34 9.38 71.98 0.68 -5.66 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.84 7.26 -2.39 -0.02 2.82 16 31 H 0.08 2.50 6.96 -2.39 -0.02 2.48 16 32 H 0.03 1.26 7.54 -2.39 -0.02 1.24 16 33 H 0.03 1.45 6.14 -2.39 -0.01 1.44 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.07 1.87 7.33 -2.39 -0.02 1.86 16 36 H 0.09 2.24 7.97 -2.39 -0.02 2.22 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 40 H 0.07 1.18 8.11 -2.39 -0.02 1.17 16 41 H 0.07 1.28 7.35 -2.38 -0.02 1.26 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.02 7.48 -2.38 -0.02 1.01 16 44 H 0.08 1.70 7.08 -2.38 -0.02 1.68 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.91 7.94 -2.39 -0.02 1.89 16 47 H 0.07 3.14 5.01 -2.38 -0.01 3.13 16 48 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.33 368.77 0.78 -61.55 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.87 Total: 22.87 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 4.52 Total: -20.89 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -2.30 Total: -126.99 kcal Atomic # 8 Polarization: -83.72 SS G_CDS: -3.87 Total: -87.59 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Atomic # 16 Polarization: 107.92 SS G_CDS: -0.33 Total: 107.58 kcal Total: -62.33 0.78 -61.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.161 kcal (2) G-P(sol) polarization free energy of solvation -62.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds