Wall clock time and date at job start Tue Mar 31 2020 12:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47092 * 2 1 4 4 C 1.46502 * 120.00353 * 275.00193 * 3 2 1 5 5 C 1.50702 * 109.46778 * 297.92250 * 4 3 2 6 6 H 1.07995 * 119.99949 * 5.61563 * 5 4 3 7 7 C 1.37878 * 120.00035 * 185.61875 * 5 4 3 8 8 N 1.31522 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46957 * 89.99985 * 9 7 5 11 11 H 1.48500 * 109.47225 * 209.99788 * 9 7 5 12 12 H 1.48496 * 109.47498 * 330.00040 * 9 7 5 13 13 S 1.65601 * 119.99966 * 95.00216 * 3 2 1 14 14 O 1.42093 * 106.40278 * 337.75792 * 13 3 2 15 15 O 1.42106 * 106.40216 * 204.83615 * 13 3 2 16 16 N 1.65601 * 107.21784 * 91.29937 * 13 3 2 17 17 C 1.50163 * 120.54125 * 105.95071 * 16 13 3 18 18 C 1.46232 * 107.53448 * 250.13549 * 17 16 13 19 19 H 1.09000 * 108.52600 * 62.82953 * 18 17 16 20 20 C 1.53005 * 108.52667 * 180.50447 * 18 17 16 21 21 C 1.52525 * 114.27808 * 301.58819 * 18 17 16 22 22 C 1.50127 * 105.41336 * 89.40566 * 21 18 17 23 23 C 1.54844 * 110.81726 * 262.31798 * 22 21 18 24 24 C 1.43441 * 120.53437 * 285.66793 * 16 13 3 25 25 H 1.08997 * 108.15906 * 210.42516 * 24 16 13 26 26 C 1.53005 * 108.15812 * 326.99328 * 24 16 13 27 27 H 1.09007 * 109.46714 * 299.99958 * 1 2 3 28 28 H 1.09004 * 109.46978 * 59.99669 * 1 2 3 29 29 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46976 * 240.00018 * 2 1 3 31 31 H 1.08996 * 109.46818 * 120.00035 * 2 1 3 32 32 H 1.08997 * 109.47404 * 57.91995 * 4 3 2 33 33 H 1.09001 * 109.47420 * 177.92385 * 4 3 2 34 34 H 0.96994 * 119.99866 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.84510 * 9.64244 * 17 16 13 36 36 H 1.09003 * 109.84785 * 130.55554 * 17 16 13 37 37 H 1.08991 * 109.46883 * 59.99711 * 20 18 17 38 38 H 1.09000 * 109.47093 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.46568 * 299.99708 * 20 18 17 40 40 H 1.08993 * 110.25364 * 208.37560 * 21 18 17 41 41 H 1.08996 * 110.25025 * 330.29451 * 21 18 17 42 42 H 1.09007 * 109.21017 * 22.66323 * 22 21 18 43 43 H 1.09004 * 109.20980 * 141.97422 * 22 21 18 44 44 H 1.08999 * 109.36049 * 159.07299 * 23 22 21 45 45 H 1.09000 * 109.36243 * 278.79705 * 23 22 21 46 46 H 1.09003 * 109.46996 * 70.49385 * 26 24 16 47 47 H 1.09001 * 109.46565 * 190.49320 * 26 24 16 48 48 H 1.08996 * 109.47043 * 310.49313 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.1659 1.4077 -2.1381 6 1 3.5858 0.4625 -1.8270 7 6 3.5519 1.9730 -3.3349 8 7 3.0409 3.1243 -3.7135 9 14 4.8015 1.1044 -4.4182 10 1 4.0956 0.1979 -5.3591 11 1 5.5746 2.1120 -5.1878 12 1 5.7275 0.3129 -3.5691 13 16 2.4122 2.1201 1.4287 14 8 1.7107 1.4220 2.4483 15 8 2.2762 3.5174 1.2086 16 7 4.0230 1.8435 1.6958 17 6 5.0279 2.9430 1.5054 18 6 5.8183 2.6168 0.3192 19 1 5.1549 2.6013 -0.5456 20 6 6.8598 3.7182 0.1110 21 6 6.5434 1.2773 0.3976 22 6 5.5782 0.2682 -0.1535 23 6 4.8229 -0.4526 0.9901 24 6 4.4802 0.5514 2.1187 25 1 5.3706 0.6900 2.7320 26 6 3.3963 -0.0732 2.9997 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1952 2.1406 -1.7733 33 1 2.4966 3.1251 -1.0625 34 1 3.3122 3.5218 -4.5556 35 1 4.5137 3.8928 1.3578 36 1 5.6775 3.0059 2.3785 37 1 7.5078 3.7753 0.9854 38 1 7.4582 3.4904 -0.7711 39 1 6.3547 4.6738 -0.0300 40 1 7.4493 1.3026 -0.2080 41 1 6.7890 1.0413 1.4330 42 1 4.8576 0.7746 -0.7958 43 1 6.1260 -0.4683 -0.7415 44 1 3.9019 -0.8846 0.5988 45 1 5.4512 -1.2465 1.3939 46 1 2.5380 -0.3422 2.3839 47 1 3.7912 -0.9669 3.4829 48 1 3.0876 0.6445 3.7597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337088550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:15 Heat of formation + Delta-G solvation = -71.233577 kcal Electronic energy + Delta-G solvation = -29113.982362 eV Core-core repulsion = 25523.991763 eV Total energy + Delta-G solvation = -3589.990599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.12787 -37.02349 -36.03282 -35.21790 -34.45821 -32.79866 -32.68954 -29.91079 -29.22696 -26.67758 -25.92134 -25.29076 -23.45088 -22.69594 -21.55278 -20.43095 -19.73644 -17.88814 -17.09331 -16.53195 -16.28858 -16.03609 -15.25400 -14.75450 -14.51620 -14.30148 -13.88227 -13.78994 -13.43949 -13.14459 -12.87660 -12.65492 -12.45265 -12.19179 -12.11611 -11.96471 -11.78714 -11.75787 -11.66933 -11.57442 -11.50429 -11.15709 -11.10340 -10.92533 -10.81784 -10.62407 -10.50915 -10.20070 -10.06037 -10.01992 -9.92324 -9.85748 -9.70635 -9.31284 -8.61217 -8.53065 -7.95528 -6.13532 -4.18310 1.31474 3.22073 3.30578 3.31124 3.48077 4.12832 4.33570 4.84551 4.99168 5.10913 5.19623 5.21739 5.36422 5.43049 5.44766 5.49338 5.58557 5.77720 5.81061 5.85489 5.87630 5.92880 5.96017 6.00264 6.07440 6.12373 6.15832 6.25014 6.30586 6.33943 6.42636 6.48121 6.58023 6.69262 6.72709 6.74610 6.78468 6.86057 6.95008 7.07356 7.21141 7.40840 7.46281 7.68157 7.85125 8.17119 8.85602 9.45836 10.94337 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.008336 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.071283 B = 3358.268215 C = 4226.399333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 N -0.988 5.988 4 C 0.249 3.751 5 C -0.532 4.532 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.269 1.269 13 S 2.778 3.222 14 O -0.994 6.994 15 O -0.986 6.986 16 N -0.994 5.994 17 C 0.137 3.863 18 C -0.126 4.126 19 H 0.102 0.898 20 C -0.146 4.146 21 C -0.101 4.101 22 C -0.151 4.151 23 C -0.131 4.131 24 C 0.154 3.846 25 H 0.072 0.928 26 C -0.183 4.183 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.119 0.881 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -5.264 9.422 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.829 5.829 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.091 0.909 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.194 1.194 13 S 2.789 3.211 14 O -0.978 6.978 15 O -0.971 6.971 16 N -0.831 5.831 17 C 0.013 3.987 18 C -0.146 4.146 19 H 0.120 0.880 20 C -0.204 4.204 21 C -0.138 4.138 22 C -0.188 4.188 23 C -0.171 4.171 24 C 0.046 3.954 25 H 0.090 0.910 26 C -0.241 4.241 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.315 -4.596 9.852 11.697 hybrid contribution 1.091 -0.729 -1.132 1.733 sum 5.406 -5.325 8.721 11.560 Atomic orbital electron populations 1.22184 0.97138 1.01211 1.02267 1.21143 0.93552 0.83220 1.02234 1.57714 1.78374 1.22920 1.23925 1.19106 0.97293 0.92033 0.78881 1.21496 1.24483 1.07283 1.03832 0.90943 1.24929 0.96378 0.94755 0.97625 1.69944 1.43101 1.16950 1.22410 0.86709 0.81659 0.79495 0.80918 1.20743 1.21259 1.19396 1.02025 0.72910 0.72959 0.73228 1.93622 1.72813 1.74494 1.56828 1.93541 1.85668 1.31571 1.86280 1.58119 1.25696 1.16279 1.83033 1.20828 0.90492 0.89672 0.97719 1.20631 0.97883 0.95210 1.00856 0.88016 1.21911 0.98720 0.98819 1.00987 1.20983 0.97563 0.94924 1.00361 1.22079 0.99796 0.98575 0.98376 1.22736 1.00682 0.97309 0.96352 1.20351 0.98109 0.82672 0.94301 0.90964 1.22932 0.98506 1.01276 1.01423 0.92877 0.92042 0.92546 0.89840 0.91668 0.95628 0.93063 0.92636 0.88666 0.91493 0.93415 0.92689 0.92683 0.92388 0.92412 0.86322 0.93687 0.91686 0.92039 0.90213 0.92743 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.12 2.14 5.04 -4.04 -0.02 2.12 16 3 N -0.99 -19.63 2.96 -115.67 -0.34 -19.97 16 4 C 0.25 5.90 5.62 -5.19 -0.03 5.87 16 5 C -0.53 -12.79 6.81 -34.44 -0.23 -13.02 16 6 H 0.07 1.66 5.41 -52.49 -0.28 1.38 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 9 Si 0.88 19.82 29.54 -169.99 -5.02 14.80 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 13 S 2.78 54.25 5.85 -107.50 -0.63 53.62 16 14 O -0.99 -19.40 12.38 -57.17 -0.71 -20.11 16 15 O -0.99 -22.47 15.10 -57.17 -0.86 -23.33 16 16 N -0.99 -16.37 2.85 -108.90 -0.31 -16.68 16 17 C 0.14 2.11 5.24 -5.21 -0.03 2.09 16 18 C -0.13 -2.00 2.22 -94.08 -0.21 -2.21 16 19 H 0.10 2.01 6.56 -51.93 -0.34 1.67 16 20 C -0.15 -2.02 8.91 37.16 0.33 -1.69 16 21 C -0.10 -1.45 5.18 -28.40 -0.15 -1.60 16 22 C -0.15 -2.43 5.64 -27.19 -0.15 -2.58 16 23 C -0.13 -1.85 5.73 -24.76 -0.14 -1.99 16 24 C 0.15 2.19 2.27 -68.54 -0.16 2.04 16 25 H 0.07 0.92 6.90 -51.93 -0.36 0.56 16 26 C -0.18 -2.60 7.40 37.16 0.27 -2.32 16 27 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 31 H 0.07 1.01 4.16 -51.93 -0.22 0.80 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.10 1.60 6.78 -51.92 -0.35 1.25 16 36 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 41 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16 42 H 0.12 2.27 2.96 -51.92 -0.15 2.12 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.94 6.03 -51.93 -0.31 0.63 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.22 3.60 -51.93 -0.19 1.04 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.15 6.94 -51.93 -0.36 0.79 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -28.19 353.99 -9.82 -38.01 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.79 Total: 5.90 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.23 Total: -14.02 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.08 Total: -60.22 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.57 Total: -43.44 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 54.25 SS G_CDS: -0.63 Total: 53.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.19 -9.82 -38.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.220 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds