Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47092 * 2 1 4 4 C 1.46502 * 120.00353 * 275.00193 * 3 2 1 5 5 C 1.50702 * 109.46778 * 297.92250 * 4 3 2 6 6 H 1.07995 * 119.99949 * 5.61563 * 5 4 3 7 7 C 1.37878 * 120.00035 * 185.61875 * 5 4 3 8 8 N 1.31522 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46957 * 89.99985 * 9 7 5 11 11 H 1.48500 * 109.47225 * 209.99788 * 9 7 5 12 12 H 1.48496 * 109.47498 * 330.00040 * 9 7 5 13 13 S 1.65601 * 119.99966 * 95.00216 * 3 2 1 14 14 O 1.42093 * 106.40278 * 337.75792 * 13 3 2 15 15 O 1.42106 * 106.40216 * 204.83615 * 13 3 2 16 16 N 1.65601 * 107.21784 * 91.29937 * 13 3 2 17 17 C 1.50163 * 120.54125 * 105.95071 * 16 13 3 18 18 C 1.46232 * 107.53448 * 250.13549 * 17 16 13 19 19 H 1.09000 * 108.52600 * 62.82953 * 18 17 16 20 20 C 1.53005 * 108.52667 * 180.50447 * 18 17 16 21 21 C 1.52525 * 114.27808 * 301.58819 * 18 17 16 22 22 C 1.50127 * 105.41336 * 89.40566 * 21 18 17 23 23 C 1.54844 * 110.81726 * 262.31798 * 22 21 18 24 24 C 1.43441 * 120.53437 * 285.66793 * 16 13 3 25 25 H 1.08997 * 108.15906 * 210.42516 * 24 16 13 26 26 C 1.53005 * 108.15812 * 326.99328 * 24 16 13 27 27 H 1.09007 * 109.46714 * 299.99958 * 1 2 3 28 28 H 1.09004 * 109.46978 * 59.99669 * 1 2 3 29 29 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46976 * 240.00018 * 2 1 3 31 31 H 1.08996 * 109.46818 * 120.00035 * 2 1 3 32 32 H 1.08997 * 109.47404 * 57.91995 * 4 3 2 33 33 H 1.09001 * 109.47420 * 177.92385 * 4 3 2 34 34 H 0.96994 * 119.99866 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.84510 * 9.64244 * 17 16 13 36 36 H 1.09003 * 109.84785 * 130.55554 * 17 16 13 37 37 H 1.08991 * 109.46883 * 59.99711 * 20 18 17 38 38 H 1.09000 * 109.47093 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.46568 * 299.99708 * 20 18 17 40 40 H 1.08993 * 110.25364 * 208.37560 * 21 18 17 41 41 H 1.08996 * 110.25025 * 330.29451 * 21 18 17 42 42 H 1.09007 * 109.21017 * 22.66323 * 22 21 18 43 43 H 1.09004 * 109.20980 * 141.97422 * 22 21 18 44 44 H 1.08999 * 109.36049 * 159.07299 * 23 22 21 45 45 H 1.09000 * 109.36243 * 278.79705 * 23 22 21 46 46 H 1.09003 * 109.46996 * 70.49385 * 26 24 16 47 47 H 1.09001 * 109.46565 * 190.49320 * 26 24 16 48 48 H 1.08996 * 109.47043 * 310.49313 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.1659 1.4077 -2.1381 6 1 3.5858 0.4625 -1.8270 7 6 3.5519 1.9730 -3.3349 8 7 3.0409 3.1243 -3.7135 9 14 4.8015 1.1044 -4.4182 10 1 4.0956 0.1979 -5.3591 11 1 5.5746 2.1120 -5.1878 12 1 5.7275 0.3129 -3.5691 13 16 2.4122 2.1201 1.4287 14 8 1.7107 1.4220 2.4483 15 8 2.2762 3.5174 1.2086 16 7 4.0230 1.8435 1.6958 17 6 5.0279 2.9430 1.5054 18 6 5.8183 2.6168 0.3192 19 1 5.1549 2.6013 -0.5456 20 6 6.8598 3.7182 0.1110 21 6 6.5434 1.2773 0.3976 22 6 5.5782 0.2682 -0.1535 23 6 4.8229 -0.4526 0.9901 24 6 4.4802 0.5514 2.1187 25 1 5.3706 0.6900 2.7320 26 6 3.3963 -0.0732 2.9997 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1952 2.1406 -1.7733 33 1 2.4966 3.1251 -1.0625 34 1 3.3122 3.5218 -4.5556 35 1 4.5137 3.8928 1.3578 36 1 5.6775 3.0059 2.3785 37 1 7.5078 3.7753 0.9854 38 1 7.4582 3.4904 -0.7711 39 1 6.3547 4.6738 -0.0300 40 1 7.4493 1.3026 -0.2080 41 1 6.7890 1.0413 1.4330 42 1 4.8576 0.7746 -0.7958 43 1 6.1260 -0.4683 -0.7415 44 1 3.9019 -0.8846 0.5988 45 1 5.4512 -1.2465 1.3939 46 1 2.5380 -0.3422 2.3839 47 1 3.7912 -0.9669 3.4829 48 1 3.0876 0.6445 3.7597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337088550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = -88.380975 kcal Electronic energy + Delta-G solvation = -29114.725929 eV Core-core repulsion = 25523.991763 eV Total energy + Delta-G solvation = -3590.734166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34307 -38.58703 -37.66630 -36.85972 -35.69084 -34.60438 -34.01102 -31.48080 -30.40762 -28.51068 -27.03926 -26.50781 -25.09020 -23.98502 -23.14570 -21.69588 -20.96957 -19.40330 -18.65984 -18.35657 -17.75327 -17.45818 -16.82584 -16.18142 -15.83795 -15.63823 -15.39638 -15.14319 -14.80341 -14.65086 -14.41375 -14.00243 -13.69642 -13.62975 -13.50419 -13.39554 -13.35091 -13.15883 -13.06009 -12.95853 -12.83231 -12.74242 -12.64300 -12.55337 -12.30595 -12.18103 -11.93831 -11.72975 -11.46516 -11.36908 -11.26841 -11.13730 -10.95030 -10.75316 -10.54287 -9.87477 -9.62900 -8.11363 -6.20493 -0.22166 1.42572 1.45134 1.53476 2.01421 2.44875 2.60493 3.21302 3.46616 3.67668 3.89640 3.98161 4.12781 4.20276 4.25690 4.30439 4.39155 4.47215 4.55940 4.64902 4.74252 4.75100 4.77806 4.84697 4.85342 4.94304 4.99379 5.01677 5.11999 5.16535 5.19538 5.23419 5.31139 5.36615 5.40533 5.43239 5.51939 5.57539 5.60644 5.68650 5.71159 5.79926 5.84407 5.98096 6.12431 6.21937 6.90370 7.46855 8.97549 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.008336 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.071283 B = 3358.268215 C = 4226.399333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.267 3.733 5 C -0.514 4.514 6 H 0.087 0.913 7 C 0.016 3.984 8 N -0.930 5.930 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.253 1.253 13 S 2.785 3.215 14 O -0.994 6.994 15 O -1.027 7.027 16 N -0.989 5.989 17 C 0.134 3.866 18 C -0.123 4.123 19 H 0.053 0.947 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.155 4.155 23 C -0.128 4.128 24 C 0.147 3.853 25 H 0.103 0.897 26 C -0.182 4.182 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.088 0.912 32 H -0.002 1.002 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -7.856 11.257 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.832 5.832 4 C 0.144 3.856 5 C -0.553 4.553 6 H 0.105 0.895 7 C -0.183 4.183 8 N -0.570 5.570 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.176 1.176 13 S 2.796 3.204 14 O -0.978 6.978 15 O -1.011 7.011 16 N -0.828 5.828 17 C 0.010 3.990 18 C -0.143 4.143 19 H 0.072 0.928 20 C -0.201 4.201 21 C -0.130 4.130 22 C -0.193 4.193 23 C -0.167 4.167 24 C 0.040 3.960 25 H 0.121 0.879 26 C -0.241 4.241 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.016 0.984 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.624 -7.222 11.705 15.266 hybrid contribution 0.356 0.057 -1.617 1.657 sum 6.980 -7.166 10.088 14.207 Atomic orbital electron populations 1.22177 0.96372 1.03004 1.01067 1.21367 0.94298 0.81778 1.03199 1.57612 1.79196 1.23821 1.22529 1.18594 0.95672 0.91011 0.80359 1.21716 1.23275 1.07202 1.03152 0.89540 1.25671 0.98215 0.95283 0.99170 1.70091 1.45160 1.18852 1.22944 0.85761 0.79699 0.78322 0.79247 1.20632 1.21977 1.17612 1.01691 0.73849 0.71911 0.72982 1.93631 1.73653 1.74092 1.56382 1.93485 1.86641 1.34286 1.86736 1.57925 1.24475 1.17799 1.82630 1.20966 0.90302 0.88402 0.99292 1.20537 0.97711 0.97132 0.98931 0.92844 1.21885 0.98455 0.97444 1.02339 1.20958 0.97023 0.93043 1.02004 1.22016 0.99540 0.98866 0.98830 1.22749 1.00696 0.97695 0.95576 1.20639 0.99248 0.81399 0.94750 0.87893 1.22881 0.98039 1.02257 1.00880 0.93577 0.93718 0.89258 0.90086 0.89367 0.98396 0.96509 0.92987 0.91010 0.87483 0.90288 0.92891 0.93973 0.91812 0.89673 0.89839 0.93510 0.92494 0.88862 0.91743 0.89540 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.29 10.24 71.98 0.74 -4.55 16 2 C 0.12 4.02 5.04 86.38 0.44 4.45 16 3 N -0.99 -40.33 2.96 -519.86 -1.54 -41.87 16 4 C 0.27 13.36 5.62 85.63 0.48 13.84 16 5 C -0.51 -25.38 6.81 25.60 0.17 -25.21 16 6 H 0.09 3.97 5.41 -2.91 -0.02 3.96 16 7 C 0.02 0.82 5.46 84.65 0.46 1.28 16 8 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 9 Si 0.94 41.14 29.54 68.60 2.03 43.17 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 13 S 2.78 110.00 5.85 -56.49 -0.33 109.67 16 14 O -0.99 -38.23 12.38 -128.00 -1.58 -39.82 16 15 O -1.03 -49.04 15.10 -128.00 -1.93 -50.98 16 16 N -0.99 -31.16 2.85 -498.47 -1.42 -32.58 16 17 C 0.13 3.96 5.24 83.58 0.44 4.39 16 18 C -0.12 -3.76 2.22 -13.03 -0.03 -3.79 16 19 H 0.05 2.17 6.56 -2.39 -0.02 2.15 16 20 C -0.14 -3.76 8.91 71.98 0.64 -3.12 16 21 C -0.09 -2.38 5.18 29.51 0.15 -2.22 16 22 C -0.16 -4.57 5.64 30.30 0.17 -4.40 16 23 C -0.13 -3.12 5.73 31.87 0.18 -2.93 16 24 C 0.15 3.65 2.27 46.21 0.10 3.75 16 25 H 0.10 2.02 6.90 -2.39 -0.02 2.00 16 26 C -0.18 -4.54 7.40 71.98 0.53 -4.01 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.77 7.02 -2.39 -0.02 2.75 16 31 H 0.09 2.59 4.16 -2.39 -0.01 2.58 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 33 H 0.02 0.96 6.91 -2.39 -0.02 0.94 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.07 2.47 6.78 -2.38 -0.02 2.45 16 36 H 0.11 2.33 8.13 -2.39 -0.02 2.31 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.40 7.98 -2.39 -0.02 1.38 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.56 7.72 -2.39 -0.02 1.54 16 41 H 0.08 1.72 6.30 -2.39 -0.02 1.71 16 42 H 0.08 3.12 2.96 -2.38 -0.01 3.11 16 43 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.06 1.48 6.03 -2.39 -0.01 1.46 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.80 3.60 -2.39 -0.01 1.79 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 1.72 6.94 -2.39 -0.02 1.70 16 Total: -1.00 -64.31 353.99 0.94 -63.38 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.95 Total: 24.61 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 4.48 Total: -22.51 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -2.68 Total: -127.52 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -3.52 Total: -90.79 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 110.00 SS G_CDS: -0.33 Total: 109.67 kcal Total: -64.31 0.94 -63.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.006 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds