Wall clock time and date at job start Tue Mar 31 2020 12:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46518 * 2 1 4 4 C 1.46496 * 120.00381 * 276.46584 * 3 2 1 5 5 C 1.50697 * 109.47431 * 280.08484 * 4 3 2 6 6 H 1.07999 * 119.99884 * 4.62884 * 5 4 3 7 7 C 1.37879 * 119.99999 * 184.63115 * 5 4 3 8 8 N 1.31507 * 119.99942 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99681 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47223 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46975 * 119.99966 * 9 7 5 12 12 H 1.48501 * 109.46548 * 239.99632 * 9 7 5 13 13 S 1.65601 * 119.99877 * 96.47323 * 3 2 1 14 14 O 1.42102 * 106.40099 * 329.84952 * 13 3 2 15 15 O 1.42097 * 106.40489 * 196.93114 * 13 3 2 16 16 N 1.65596 * 107.22281 * 83.38862 * 13 3 2 17 17 C 1.46498 * 119.99714 * 65.22704 * 16 13 3 18 18 H 1.08996 * 109.47528 * 333.67401 * 17 16 13 19 19 C 1.53001 * 109.47036 * 93.67520 * 17 16 13 20 20 C 1.52997 * 109.47356 * 213.67164 * 17 16 13 21 21 C 1.53005 * 109.47555 * 175.17106 * 20 17 16 22 22 C 1.53004 * 109.47311 * 179.97438 * 21 20 17 23 23 C 1.53001 * 109.46571 * 60.00509 * 22 21 20 24 24 C 1.53000 * 109.47025 * 299.99242 * 23 22 21 25 25 C 1.53003 * 109.47103 * 55.17403 * 20 17 16 26 26 H 1.09007 * 109.46422 * 185.02678 * 1 2 3 27 27 H 1.08989 * 109.47381 * 305.02327 * 1 2 3 28 28 H 1.08995 * 109.47229 * 65.03441 * 1 2 3 29 29 H 1.09001 * 109.47173 * 240.00136 * 2 1 3 30 30 H 1.08994 * 109.47021 * 120.00014 * 2 1 3 31 31 H 1.09000 * 109.46924 * 40.08367 * 4 3 2 32 32 H 1.09002 * 109.47480 * 160.07969 * 4 3 2 33 33 H 0.97001 * 119.99905 * 179.97438 * 8 7 5 34 34 H 0.97005 * 120.00177 * 245.23461 * 16 13 3 35 35 H 1.09000 * 109.46768 * 299.99902 * 19 17 16 36 36 H 1.09000 * 109.47529 * 59.99633 * 19 17 16 37 37 H 1.09000 * 109.47502 * 179.97438 * 19 17 16 38 38 H 1.09002 * 109.47074 * 295.17289 * 20 17 16 39 39 H 1.09003 * 109.46281 * 60.00255 * 21 20 17 40 40 H 1.08997 * 109.47319 * 300.00590 * 21 20 17 41 41 H 1.08996 * 109.46596 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.47129 * 299.99988 * 22 21 20 43 43 H 1.08993 * 109.47819 * 59.99902 * 23 22 21 44 44 H 1.09000 * 109.46600 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.46908 * 180.02562 * 24 23 22 46 46 H 1.08997 * 109.47665 * 300.00248 * 24 23 22 47 47 H 1.08993 * 109.47512 * 60.00075 * 25 20 17 48 48 H 1.09002 * 109.46629 * 299.99851 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1277 2.1196 -1.2606 5 6 3.3906 1.7111 -1.9740 6 1 4.0079 0.9222 -1.5703 7 6 3.7582 2.3447 -3.1421 8 7 3.0064 3.3051 -3.6340 9 14 5.3235 1.8378 -4.0268 10 1 5.9848 0.7419 -3.2741 11 1 4.9886 1.3675 -5.3950 12 1 6.2415 3.0018 -4.1144 13 16 2.4466 2.1080 1.4250 14 8 1.6314 1.5262 2.4331 15 8 2.4855 3.5049 1.1673 16 7 4.0025 1.6509 1.7603 17 6 5.0952 2.0709 0.8795 18 1 4.7068 2.2444 -0.1240 19 6 5.7155 3.3622 1.4166 20 6 6.1614 0.9747 0.8312 21 6 7.2433 1.3595 -0.1800 22 6 8.3098 0.2635 -0.2278 23 6 7.6644 -1.0580 -0.6496 24 6 6.5827 -1.4429 0.3617 25 6 5.5157 -0.3466 0.4091 26 1 -0.3632 -1.0238 0.0901 27 1 -0.3633 0.5897 0.8415 28 1 -0.3633 0.4337 -0.9316 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.2662 1.8945 -1.8894 32 1 2.1569 3.1894 -1.0538 33 1 3.2652 3.7510 -4.4556 34 1 4.1904 1.1049 2.5398 35 1 4.9559 4.1432 1.4510 36 1 6.1039 3.1888 2.4202 37 1 6.5289 3.6745 0.7616 38 1 6.6104 0.8608 1.8180 39 1 7.7033 2.3008 0.1208 40 1 6.7944 1.4734 -1.1667 41 1 9.0807 0.5379 -0.9478 42 1 8.7587 0.1501 0.7590 43 1 7.2156 -0.9446 -1.6363 44 1 8.4243 -1.8387 -0.6841 45 1 6.1232 -2.3847 0.0614 46 1 7.0315 -1.5565 1.3484 47 1 5.0668 -0.2328 -0.5775 48 1 4.7450 -0.6208 1.1296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337091010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:12 Heat of formation + Delta-G solvation = -133.219967 kcal Electronic energy + Delta-G solvation = -28133.130092 eV Core-core repulsion = 24540.451561 eV Total energy + Delta-G solvation = -3592.678531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02024 -38.25125 -37.63503 -36.82380 -36.49848 -34.63652 -32.14351 -31.48063 -31.32160 -29.47375 -28.45930 -24.93767 -24.45998 -23.28509 -23.16018 -21.65295 -20.85669 -20.11095 -18.65490 -18.45079 -18.18983 -17.25840 -16.79520 -16.28314 -15.93025 -15.36693 -15.20456 -14.97083 -14.80603 -14.64021 -14.49062 -14.17052 -13.82687 -13.69129 -13.65497 -13.52507 -13.33706 -13.09462 -13.00534 -12.96784 -12.73036 -12.66398 -12.61338 -12.35120 -12.31655 -12.15225 -12.10827 -11.95141 -11.69067 -11.61897 -11.45080 -10.99310 -10.90604 -10.81090 -10.54387 -10.25400 -9.72107 -8.12198 -6.22765 -0.21087 1.40949 1.44892 1.54682 2.07380 2.44589 2.69104 3.20097 3.53407 3.75709 3.90638 3.94666 4.03503 4.27729 4.32023 4.40437 4.47152 4.50454 4.58948 4.62997 4.65523 4.73837 4.75484 4.79406 4.82774 4.86504 4.99043 5.02153 5.11911 5.18798 5.22102 5.25913 5.33254 5.34886 5.39196 5.41207 5.45136 5.47119 5.54224 5.59269 5.62661 5.73838 5.89106 5.97711 6.19311 6.35556 6.91467 7.45932 8.96378 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.007715 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.403431 B = 3628.623054 C = 4753.606760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.993 5.993 4 C 0.258 3.742 5 C -0.526 4.526 6 H 0.086 0.914 7 C 0.016 3.984 8 N -0.929 5.929 9 Si 0.938 3.062 10 H -0.243 1.243 11 H -0.289 1.289 12 H -0.286 1.286 13 S 2.795 3.205 14 O -1.011 7.011 15 O -1.018 7.018 16 N -1.105 6.105 17 C 0.136 3.864 18 H 0.088 0.912 19 C -0.168 4.168 20 C -0.072 4.072 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.120 4.120 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.420 0.580 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -10.084 9.299 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.834 5.834 4 C 0.134 3.866 5 C -0.565 4.565 6 H 0.104 0.896 7 C -0.183 4.183 8 N -0.569 5.569 9 Si 0.764 3.236 10 H -0.166 1.166 11 H -0.216 1.216 12 H -0.212 1.212 13 S 2.803 3.197 14 O -0.995 6.995 15 O -1.002 7.002 16 N -0.867 5.867 17 C 0.029 3.971 18 H 0.106 0.894 19 C -0.227 4.227 20 C -0.092 4.092 21 C -0.162 4.162 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.157 4.157 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.398 -9.274 9.533 15.729 hybrid contribution 0.493 0.034 -1.041 1.153 sum 8.891 -9.239 8.492 15.379 Atomic orbital electron populations 1.22186 0.96233 1.03001 1.01230 1.21200 0.94397 0.81318 1.03145 1.57579 1.79066 1.23824 1.22966 1.18759 0.96681 0.90872 0.80310 1.21920 1.07854 1.19336 1.07402 0.89612 1.25693 0.99591 0.94840 0.98212 1.70080 1.39857 1.25164 1.21830 0.85814 0.80327 0.78924 0.78568 1.16645 1.21601 1.21173 1.01261 0.73280 0.72909 0.72214 1.93522 1.67602 1.79543 1.58865 1.93531 1.87320 1.33562 1.85749 1.55641 1.23806 1.69280 1.37979 1.21150 0.87596 0.94388 0.93918 0.89374 1.22319 1.00994 0.97048 1.02342 1.21280 0.94181 0.93615 1.00160 1.21706 0.96456 0.99412 0.98668 1.21482 0.97007 0.94210 1.02182 1.21577 0.98392 0.97654 0.98526 1.21495 0.95927 0.97645 0.99787 1.21653 0.98134 0.94457 1.01480 0.89218 0.93709 0.93439 0.90093 0.89722 0.96756 0.96258 0.92925 0.74405 0.94153 0.90471 0.90845 0.88930 0.90859 0.94139 0.92030 0.90293 0.94198 0.90831 0.91944 0.90607 0.93331 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 10.23 71.98 0.74 -4.38 16 2 C 0.12 4.07 6.04 86.38 0.52 4.59 16 3 N -0.99 -39.70 2.84 -519.86 -1.48 -41.17 16 4 C 0.26 12.71 5.43 85.63 0.46 13.17 16 5 C -0.53 -25.96 7.20 25.60 0.18 -25.78 16 6 H 0.09 3.91 5.34 -2.91 -0.02 3.90 16 7 C 0.02 0.84 5.46 84.66 0.46 1.30 16 8 N -0.93 -53.38 13.29 21.45 0.28 -53.09 16 9 Si 0.94 40.85 29.24 68.60 2.01 42.85 16 10 H -0.24 -9.64 7.00 99.48 0.70 -8.95 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 13 S 2.79 109.17 5.98 -56.49 -0.34 108.83 16 14 O -1.01 -40.22 17.32 -128.00 -2.22 -42.44 16 15 O -1.02 -48.59 15.66 -128.00 -2.00 -50.59 16 16 N -1.11 -33.40 4.63 -169.40 -0.78 -34.18 16 17 C 0.14 4.28 2.37 44.99 0.11 4.39 16 18 H 0.09 3.50 5.13 -2.39 -0.01 3.49 16 19 C -0.17 -4.99 9.27 71.98 0.67 -4.32 16 20 C -0.07 -1.80 1.86 -10.79 -0.02 -1.82 16 21 C -0.12 -3.19 4.96 30.60 0.15 -3.04 16 22 C -0.11 -2.30 5.92 30.60 0.18 -2.12 16 23 C -0.12 -2.65 5.92 30.59 0.18 -2.47 16 24 C -0.11 -2.26 5.92 30.61 0.18 -2.08 16 25 C -0.12 -3.01 5.00 30.61 0.15 -2.86 16 26 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 29 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 30 H 0.08 2.33 7.74 -2.39 -0.02 2.31 16 31 H 0.01 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.02 1.10 6.77 -2.39 -0.02 1.08 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.42 9.80 8.66 -96.74 -0.84 8.96 16 35 H 0.04 1.42 7.49 -2.39 -0.02 1.40 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.01 6.56 -2.39 -0.02 1.99 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.72 6.56 -2.39 -0.02 1.70 16 40 H 0.04 1.29 7.74 -2.39 -0.02 1.28 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.05 1.53 6.09 -2.39 -0.01 1.52 16 48 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 Total: -1.00 -65.49 375.19 -0.47 -65.96 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.09 Total: 29.26 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.97 Total: -25.43 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -1.98 Total: -128.45 kcal Atomic # 8 Polarization: -88.81 SS G_CDS: -4.22 Total: -93.03 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.01 Total: 42.85 kcal Atomic # 16 Polarization: 109.17 SS G_CDS: -0.34 Total: 108.83 kcal Total: -65.49 -0.47 -65.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.258 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds