Wall clock time and date at job start Tue Mar 31 2020 12:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47496 * 2 1 4 4 C 1.46497 * 119.99708 * 274.99889 * 3 2 1 5 5 C 1.50702 * 109.47209 * 274.99625 * 4 3 2 6 6 H 1.07999 * 120.00163 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99958 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00023 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99602 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46794 * 90.00577 * 9 7 5 11 11 H 1.48499 * 109.46663 * 210.00102 * 9 7 5 12 12 H 1.48491 * 109.47231 * 330.00197 * 9 7 5 13 13 S 1.65601 * 120.00001 * 94.99878 * 3 2 1 14 14 O 1.42097 * 106.39943 * 336.45904 * 13 3 2 15 15 O 1.42099 * 106.39908 * 203.54364 * 13 3 2 16 16 N 1.65596 * 107.21709 * 89.99974 * 13 3 2 17 17 C 1.46922 * 120.63194 * 312.79064 * 16 13 3 18 18 C 1.53195 * 108.77498 * 233.58690 * 17 16 13 19 19 C 1.53040 * 109.31329 * 305.36440 * 18 17 16 20 20 C 1.53074 * 109.65693 * 61.30217 * 19 18 17 21 21 C 1.46924 * 120.62534 * 132.77221 * 16 13 3 22 22 H 1.09001 * 109.58582 * 246.33590 * 21 16 13 23 23 C 1.53000 * 109.59320 * 6.62331 * 21 16 13 24 24 C 1.52995 * 109.47419 * 179.67537 * 23 21 16 25 25 C 1.52999 * 109.46676 * 59.67692 * 23 21 16 26 26 H 1.09000 * 109.47559 * 300.00529 * 1 2 3 27 27 H 1.09008 * 109.46787 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.47584 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47142 * 239.99547 * 2 1 3 30 30 H 1.09001 * 109.46607 * 120.00384 * 2 1 3 31 31 H 1.09003 * 109.47577 * 35.00265 * 4 3 2 32 32 H 1.09006 * 109.47021 * 154.99925 * 4 3 2 33 33 H 0.96995 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.58722 * 353.37558 * 17 16 13 35 35 H 1.08999 * 109.58388 * 113.66062 * 17 16 13 36 36 H 1.09000 * 109.49709 * 65.32217 * 18 17 16 37 37 H 1.09005 * 109.49451 * 185.41243 * 18 17 16 38 38 H 1.09001 * 109.45789 * 181.38108 * 19 18 17 39 39 H 1.08991 * 109.46075 * 301.36189 * 19 18 17 40 40 H 1.08997 * 109.62390 * 178.82884 * 20 19 18 41 41 H 1.09003 * 109.38822 * 58.71851 * 20 19 18 42 42 H 1.09000 * 109.47023 * 299.67982 * 23 21 16 43 43 H 1.09000 * 109.47386 * 300.00222 * 24 23 21 44 44 H 1.08996 * 109.47208 * 179.97438 * 24 23 21 45 45 H 1.09007 * 109.46876 * 60.00048 * 24 23 21 46 46 H 1.09004 * 109.46897 * 197.70945 * 25 23 21 47 47 H 1.09003 * 109.47380 * 317.70568 * 25 23 21 48 48 H 1.08999 * 109.47252 * 77.70816 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1085 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1722 1.1109 -1.3839 7 6 3.8531 2.3612 -3.0844 8 7 3.0286 3.1868 -3.6911 9 14 5.5096 1.9640 -3.8512 10 1 5.3732 0.7814 -4.7390 11 1 5.9791 3.1277 -4.6453 12 1 6.4930 1.6672 -2.7789 13 16 2.4123 2.1201 1.4287 14 8 1.6869 1.4415 2.4447 15 8 2.3058 3.5185 1.1998 16 7 4.0144 1.8135 1.7137 17 6 4.5526 0.4535 1.5748 18 6 5.2747 0.0741 2.8716 19 6 6.3276 1.1368 3.1941 20 6 5.6456 2.4917 3.3997 21 6 4.9248 2.8965 2.1100 22 1 5.6567 3.0659 1.3202 23 6 4.1239 4.1778 2.3505 24 6 5.0734 5.3015 2.7707 25 6 3.0970 3.9367 3.4587 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3618 1.8097 -1.9454 32 1 2.0923 3.1802 -1.0756 33 1 3.2805 3.5893 -4.5369 34 1 3.7364 -0.2457 1.3931 35 1 5.2538 0.4214 0.7409 36 1 4.5531 0.0176 3.6866 37 1 5.7606 -0.8938 2.7476 38 1 6.8597 0.8566 4.1033 39 1 7.0344 1.2102 2.3677 40 1 6.3938 3.2439 3.6498 41 1 4.9223 2.4133 4.2114 42 1 3.6085 4.4617 1.4330 43 1 5.5888 5.0176 3.6882 44 1 4.5029 6.2143 2.9416 45 1 5.8051 5.4731 1.9811 46 1 2.3325 4.7128 3.4207 47 1 2.6317 2.9612 3.3170 48 1 3.5950 3.9644 4.4278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337091404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:14 Heat of formation + Delta-G solvation = -60.715158 kcal Electronic energy + Delta-G solvation = -28482.751807 eV Core-core repulsion = 24893.217320 eV Total energy + Delta-G solvation = -3589.534487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.15868 -36.91815 -36.06988 -35.67363 -34.16010 -32.70828 -32.15800 -29.95505 -29.50771 -27.15109 -26.51824 -24.16216 -23.71734 -23.09747 -21.65922 -20.53583 -19.82777 -18.23060 -17.02110 -16.62284 -16.22344 -15.66702 -15.16414 -14.94443 -14.48920 -14.44871 -14.31395 -13.78363 -13.60832 -13.52049 -13.09320 -12.78982 -12.63086 -12.52245 -12.10835 -12.03903 -11.92975 -11.74644 -11.62439 -11.55350 -11.36458 -11.12847 -11.08875 -10.95268 -10.79203 -10.73208 -10.59857 -10.53618 -10.40411 -10.29545 -10.15190 -9.96436 -9.77041 -9.07274 -8.53143 -8.46119 -8.05814 -6.10373 -4.16255 1.31821 3.24197 3.31614 3.32997 3.49714 4.06367 4.36621 4.74837 4.89979 4.97848 5.05137 5.20389 5.22640 5.24298 5.32459 5.42563 5.46838 5.53355 5.66374 5.73038 5.76525 5.83640 5.86161 5.89281 5.98100 6.00987 6.01836 6.10111 6.11452 6.13787 6.16801 6.23853 6.31030 6.39034 6.41863 6.55677 6.64648 6.66875 6.70761 7.00686 7.17485 7.37068 7.48154 7.66202 7.86944 8.16497 8.87863 9.49307 10.97731 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.006915 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.038467 B = 4048.257135 C = 4711.490252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.995 5.995 4 C 0.248 3.752 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.789 3.211 14 O -1.004 7.004 15 O -0.972 6.972 16 N -1.000 6.000 17 C 0.130 3.870 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.131 4.131 21 C 0.169 3.831 22 H 0.075 0.925 23 C -0.154 4.154 24 C -0.138 4.138 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.159 0.841 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.030 0.970 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -3.652 12.052 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.835 5.835 4 C 0.126 3.874 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.802 3.198 14 O -0.987 6.987 15 O -0.956 6.956 16 N -0.839 5.839 17 C 0.004 3.996 18 C -0.172 4.172 19 C -0.153 4.153 20 C -0.170 4.170 21 C 0.062 3.938 22 H 0.093 0.907 23 C -0.174 4.174 24 C -0.196 4.196 25 C -0.203 4.203 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.176 0.824 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.347 -3.058 12.397 13.200 hybrid contribution 1.238 -0.558 -0.822 1.587 sum 4.585 -3.616 11.576 12.965 Atomic orbital electron populations 1.22201 0.96812 1.01446 1.02433 1.21068 0.93939 0.83195 1.01955 1.57695 1.78494 1.22874 1.24487 1.19174 0.97222 0.92259 0.78789 1.21536 1.02168 1.27863 1.05921 0.92034 1.24940 0.97148 0.94868 0.96931 1.69933 1.36002 1.29871 1.17056 0.86587 0.84112 0.77895 0.79338 1.20699 1.21157 1.19831 1.02031 0.72478 0.73107 0.72168 1.93530 1.70904 1.76747 1.57503 1.93467 1.85582 1.29991 1.86547 1.58008 1.27848 1.13720 1.84327 1.21259 0.98893 0.82025 0.97432 1.21893 0.98500 0.98388 0.98375 1.21456 0.97627 0.95050 1.01177 1.22045 0.99684 0.96971 0.98263 1.20943 0.91815 0.85243 0.95753 0.90701 1.22684 0.96153 0.94334 1.04215 1.21811 0.98994 0.98106 1.00718 1.22177 0.99285 1.00556 0.98313 0.92672 0.91984 0.92279 0.90099 0.92069 0.94516 0.93099 0.92652 0.90982 0.91106 0.91538 0.91325 0.92299 0.91882 0.91025 0.91482 0.82440 0.93203 0.92514 0.92533 0.91478 0.95143 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.13 2.20 5.56 -4.04 -0.02 2.18 16 3 N -0.99 -20.69 2.67 -115.66 -0.31 -21.00 16 4 C 0.25 6.10 5.43 -5.19 -0.03 6.07 16 5 C -0.54 -13.86 9.38 -34.44 -0.32 -14.18 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 S 2.79 56.58 3.78 -107.50 -0.41 56.18 16 14 O -1.00 -21.23 15.71 -57.17 -0.90 -22.13 16 15 O -0.97 -21.46 10.50 -57.17 -0.60 -22.06 16 16 N -1.00 -17.51 3.15 -106.48 -0.34 -17.84 16 17 C 0.13 1.97 6.45 -3.71 -0.02 1.95 16 18 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 19 C -0.12 -1.35 5.88 -26.67 -0.16 -1.50 16 20 C -0.13 -1.67 4.68 -26.59 -0.12 -1.80 16 21 C 0.17 2.69 2.72 -67.60 -0.18 2.50 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 23 C -0.15 -2.54 2.15 -90.62 -0.20 -2.73 16 24 C -0.14 -1.82 8.78 37.15 0.33 -1.49 16 25 C -0.15 -2.40 6.83 37.16 0.25 -2.15 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.06 0.97 6.10 -51.93 -0.32 0.65 16 31 H 0.04 0.95 8.11 -51.93 -0.42 0.52 16 32 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.07 1.06 5.77 -51.93 -0.30 0.76 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.79 6.76 -51.93 -0.35 0.44 16 41 H 0.07 0.89 6.59 -51.93 -0.34 0.54 16 42 H 0.16 3.14 5.08 -55.98 -0.28 2.85 16 43 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 47 H 0.03 0.56 3.64 -28.38 -0.10 0.46 16 48 H 0.05 0.72 7.21 -51.93 -0.37 0.35 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -30.02 364.26 -9.93 -39.95 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.23 Total: 4.07 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.36 Total: -13.70 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.09 Total: -63.38 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.50 Total: -44.19 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 56.58 SS G_CDS: -0.41 Total: 56.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.02 -9.93 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds