Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47496 * 2 1 4 4 C 1.46497 * 119.99708 * 274.99889 * 3 2 1 5 5 C 1.50702 * 109.47209 * 274.99625 * 4 3 2 6 6 H 1.07999 * 120.00163 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99958 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00023 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99602 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46794 * 90.00577 * 9 7 5 11 11 H 1.48499 * 109.46663 * 210.00102 * 9 7 5 12 12 H 1.48491 * 109.47231 * 330.00197 * 9 7 5 13 13 S 1.65601 * 120.00001 * 94.99878 * 3 2 1 14 14 O 1.42097 * 106.39943 * 336.45904 * 13 3 2 15 15 O 1.42099 * 106.39908 * 203.54364 * 13 3 2 16 16 N 1.65596 * 107.21709 * 89.99974 * 13 3 2 17 17 C 1.46922 * 120.63194 * 312.79064 * 16 13 3 18 18 C 1.53195 * 108.77498 * 233.58690 * 17 16 13 19 19 C 1.53040 * 109.31329 * 305.36440 * 18 17 16 20 20 C 1.53074 * 109.65693 * 61.30217 * 19 18 17 21 21 C 1.46924 * 120.62534 * 132.77221 * 16 13 3 22 22 H 1.09001 * 109.58582 * 246.33590 * 21 16 13 23 23 C 1.53000 * 109.59320 * 6.62331 * 21 16 13 24 24 C 1.52995 * 109.47419 * 179.67537 * 23 21 16 25 25 C 1.52999 * 109.46676 * 59.67692 * 23 21 16 26 26 H 1.09000 * 109.47559 * 300.00529 * 1 2 3 27 27 H 1.09008 * 109.46787 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.47584 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47142 * 239.99547 * 2 1 3 30 30 H 1.09001 * 109.46607 * 120.00384 * 2 1 3 31 31 H 1.09003 * 109.47577 * 35.00265 * 4 3 2 32 32 H 1.09006 * 109.47021 * 154.99925 * 4 3 2 33 33 H 0.96995 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.58722 * 353.37558 * 17 16 13 35 35 H 1.08999 * 109.58388 * 113.66062 * 17 16 13 36 36 H 1.09000 * 109.49709 * 65.32217 * 18 17 16 37 37 H 1.09005 * 109.49451 * 185.41243 * 18 17 16 38 38 H 1.09001 * 109.45789 * 181.38108 * 19 18 17 39 39 H 1.08991 * 109.46075 * 301.36189 * 19 18 17 40 40 H 1.08997 * 109.62390 * 178.82884 * 20 19 18 41 41 H 1.09003 * 109.38822 * 58.71851 * 20 19 18 42 42 H 1.09000 * 109.47023 * 299.67982 * 23 21 16 43 43 H 1.09000 * 109.47386 * 300.00222 * 24 23 21 44 44 H 1.08996 * 109.47208 * 179.97438 * 24 23 21 45 45 H 1.09007 * 109.46876 * 60.00048 * 24 23 21 46 46 H 1.09004 * 109.46897 * 197.70945 * 25 23 21 47 47 H 1.09003 * 109.47380 * 317.70568 * 25 23 21 48 48 H 1.08999 * 109.47252 * 77.70816 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1085 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1722 1.1109 -1.3839 7 6 3.8531 2.3612 -3.0844 8 7 3.0286 3.1868 -3.6911 9 14 5.5096 1.9640 -3.8512 10 1 5.3732 0.7814 -4.7390 11 1 5.9791 3.1277 -4.6453 12 1 6.4930 1.6672 -2.7789 13 16 2.4123 2.1201 1.4287 14 8 1.6869 1.4415 2.4447 15 8 2.3058 3.5185 1.1998 16 7 4.0144 1.8135 1.7137 17 6 4.5526 0.4535 1.5748 18 6 5.2747 0.0741 2.8716 19 6 6.3276 1.1368 3.1941 20 6 5.6456 2.4917 3.3997 21 6 4.9248 2.8965 2.1100 22 1 5.6567 3.0659 1.3202 23 6 4.1239 4.1778 2.3505 24 6 5.0734 5.3015 2.7707 25 6 3.0970 3.9367 3.4587 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3618 1.8097 -1.9454 32 1 2.0923 3.1802 -1.0756 33 1 3.2805 3.5893 -4.5369 34 1 3.7364 -0.2457 1.3931 35 1 5.2538 0.4214 0.7409 36 1 4.5531 0.0176 3.6866 37 1 5.7606 -0.8938 2.7476 38 1 6.8597 0.8566 4.1033 39 1 7.0344 1.2102 2.3677 40 1 6.3938 3.2439 3.6498 41 1 4.9223 2.4133 4.2114 42 1 3.6085 4.4617 1.4330 43 1 5.5888 5.0176 3.6882 44 1 4.5029 6.2143 2.9416 45 1 5.8051 5.4731 1.9811 46 1 2.3325 4.7128 3.4207 47 1 2.6317 2.9612 3.3170 48 1 3.5950 3.9644 4.4278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337091404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -79.215645 kcal Electronic energy + Delta-G solvation = -28483.554048 eV Core-core repulsion = 24893.217320 eV Total energy + Delta-G solvation = -3590.336728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.37146 -38.46425 -37.74441 -37.22689 -35.47126 -34.69343 -33.31414 -31.57341 -30.63306 -28.64959 -28.11560 -25.35186 -25.06952 -24.65810 -23.26927 -21.64834 -21.12985 -19.72190 -18.65080 -18.45032 -17.82595 -17.24027 -16.55337 -16.43438 -16.02793 -15.70293 -15.55352 -15.22438 -14.86556 -14.73419 -14.69419 -14.24664 -13.87484 -13.76800 -13.67666 -13.57072 -13.37646 -13.25557 -13.02915 -12.94866 -12.79779 -12.72132 -12.57795 -12.44407 -12.30529 -12.14456 -11.90153 -11.87546 -11.79561 -11.72045 -11.62279 -11.31366 -11.28052 -10.57520 -10.43843 -9.85313 -9.73610 -8.16129 -6.29449 -0.24891 1.42326 1.43298 1.53344 1.99810 2.42490 2.53159 3.15564 3.50331 3.54701 3.79977 3.88891 3.94801 4.06693 4.14829 4.23800 4.32982 4.36956 4.39756 4.42652 4.55360 4.62528 4.65563 4.74742 4.80576 4.86940 4.89737 4.93594 4.95678 5.02401 5.09456 5.11572 5.15566 5.22681 5.24906 5.29181 5.33900 5.35892 5.42398 5.52433 5.55403 5.75751 5.78111 5.85291 5.99335 6.11538 6.82010 7.40300 8.92156 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.006915 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.038467 B = 4048.257135 C = 4711.490252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -1.002 6.002 4 C 0.265 3.735 5 C -0.537 4.537 6 H 0.071 0.929 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.260 1.260 13 S 2.793 3.207 14 O -1.015 7.015 15 O -0.997 6.997 16 N -1.001 6.001 17 C 0.118 3.882 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.125 4.125 21 C 0.162 3.838 22 H 0.068 0.932 23 C -0.158 4.158 24 C -0.133 4.133 25 C -0.146 4.146 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.009 0.991 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -5.144 13.623 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.841 5.841 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.089 0.911 7 C -0.189 4.189 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.185 1.185 13 S 2.807 3.193 14 O -0.999 6.999 15 O -0.982 6.982 16 N -0.842 5.842 17 C -0.007 4.007 18 C -0.167 4.167 19 C -0.152 4.152 20 C -0.164 4.164 21 C 0.056 3.944 22 H 0.086 0.914 23 C -0.178 4.178 24 C -0.191 4.191 25 C -0.203 4.203 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.027 0.973 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.919 -4.578 13.984 15.860 hybrid contribution 0.384 -0.085 -1.277 1.336 sum 6.303 -4.663 12.707 14.931 Atomic orbital electron populations 1.22194 0.95830 1.03412 1.01243 1.21344 0.94929 0.81695 1.03074 1.57639 1.79345 1.23998 1.23158 1.18673 0.96458 0.90751 0.79963 1.21812 1.02483 1.27456 1.05864 0.91091 1.25811 1.00788 0.94716 0.97590 1.70072 1.38090 1.31214 1.17567 0.85541 0.79801 0.77639 0.78638 1.19850 1.21369 1.18450 1.01819 0.73278 0.72397 0.71818 1.93506 1.71875 1.76903 1.57571 1.93502 1.86380 1.31547 1.86761 1.57864 1.26934 1.15260 1.84117 1.21526 0.99112 0.80764 0.99264 1.21889 0.98501 1.00001 0.96264 1.21486 0.97314 0.93844 1.02527 1.22039 0.99876 0.98560 0.95908 1.21143 0.91287 0.84573 0.97414 0.91394 1.22541 0.96809 0.96027 1.02436 1.21779 0.98443 0.96866 1.01989 1.22183 0.99313 0.98913 0.99906 0.93756 0.93239 0.88739 0.89780 0.90023 0.96425 0.96519 0.92660 0.90994 0.91391 0.92051 0.88739 0.89689 0.91652 0.88605 0.91691 0.86551 0.90481 0.92248 0.92210 0.92382 0.97290 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 10.24 71.98 0.74 -4.67 16 2 C 0.11 4.04 5.56 86.38 0.48 4.52 16 3 N -1.00 -42.83 2.67 -519.84 -1.39 -44.22 16 4 C 0.27 13.67 5.43 85.63 0.47 14.13 16 5 C -0.54 -28.22 9.38 25.60 0.24 -27.98 16 6 H 0.07 3.52 7.81 -2.91 -0.02 3.49 16 7 C 0.01 0.55 5.46 84.66 0.46 1.01 16 8 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 9 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 S 2.79 116.25 3.78 -56.49 -0.21 116.04 16 14 O -1.02 -43.44 15.71 -128.00 -2.01 -45.45 16 15 O -1.00 -46.55 10.50 -128.00 -1.34 -47.89 16 16 N -1.00 -34.60 3.15 -490.78 -1.55 -36.15 16 17 C 0.12 3.42 6.45 86.36 0.56 3.97 16 18 C -0.13 -2.78 6.08 30.67 0.19 -2.59 16 19 C -0.11 -2.23 5.88 30.63 0.18 -2.05 16 20 C -0.12 -2.81 4.68 30.68 0.14 -2.66 16 21 C 0.16 4.97 2.72 44.98 0.12 5.09 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 C -0.16 -5.18 2.15 -10.80 -0.02 -5.20 16 24 C -0.13 -3.28 8.78 71.98 0.63 -2.64 16 25 C -0.15 -4.77 6.83 71.98 0.49 -4.27 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.87 8.11 -2.38 -0.02 2.85 16 30 H 0.08 2.51 6.10 -2.39 -0.01 2.50 16 31 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.02 0.97 6.92 -2.38 -0.02 0.96 16 33 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.07 2.03 5.77 -2.39 -0.01 2.01 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.70 6.76 -2.39 -0.02 1.69 16 41 H 0.06 1.51 6.59 -2.39 -0.02 1.49 16 42 H 0.12 4.88 5.08 -66.59 -0.34 4.55 16 43 H 0.08 1.47 6.57 -2.39 -0.02 1.46 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.06 1.94 8.13 -2.38 -0.02 1.92 16 47 H 0.01 0.32 3.64 -17.36 -0.06 0.26 16 48 H 0.08 2.13 7.21 -2.39 -0.02 2.11 16 Total: -1.00 -66.90 364.26 1.03 -65.87 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.54 Total: 24.99 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.67 Total: -23.35 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -2.65 Total: -134.32 kcal Atomic # 8 Polarization: -89.99 SS G_CDS: -3.35 Total: -93.35 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 116.25 SS G_CDS: -0.21 Total: 116.04 kcal Total: -66.90 1.03 -65.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.341 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds