Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47019 * 2 1 4 4 C 1.46503 * 119.99885 * 274.99996 * 3 2 1 5 5 C 1.50697 * 109.47283 * 274.99988 * 4 3 2 6 6 H 1.07997 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99748 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99777 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00477 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47263 * 89.99726 * 9 7 5 11 11 H 1.48500 * 109.47388 * 210.00054 * 9 7 5 12 12 H 1.48505 * 109.46946 * 329.99986 * 9 7 5 13 13 S 1.65593 * 120.00384 * 95.00348 * 3 2 1 14 14 O 1.42102 * 106.40634 * 203.54069 * 13 3 2 15 15 O 1.42100 * 106.39831 * 336.45752 * 13 3 2 16 16 N 1.65600 * 107.22038 * 89.99519 * 13 3 2 17 17 C 1.46491 * 120.00286 * 297.67262 * 16 13 3 18 18 C 1.53000 * 109.47063 * 125.09142 * 17 16 13 19 19 C 1.52992 * 109.47397 * 245.09267 * 17 16 13 20 20 C 1.46502 * 119.99577 * 117.67054 * 16 13 3 21 21 C 1.54269 * 110.03232 * 67.04536 * 20 16 13 22 22 C 1.54962 * 104.15994 * 217.13154 * 21 20 16 23 23 C 1.54893 * 102.77597 * 37.89057 * 22 21 20 24 24 C 1.53871 * 110.03435 * 309.82880 * 20 16 13 25 25 H 1.09002 * 109.46727 * 299.99891 * 1 2 3 26 26 H 1.09000 * 109.47438 * 59.99768 * 1 2 3 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46727 * 240.00109 * 2 1 3 29 29 H 1.09000 * 109.47438 * 120.00232 * 2 1 3 30 30 H 1.09007 * 109.47372 * 35.00284 * 4 3 2 31 31 H 1.09000 * 109.47066 * 154.99507 * 4 3 2 32 32 H 0.97002 * 119.99862 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47006 * 5.09601 * 17 16 13 34 34 H 1.08995 * 109.47082 * 68.26720 * 18 17 16 35 35 H 1.09007 * 109.47277 * 188.26649 * 18 17 16 36 36 H 1.09002 * 109.47270 * 308.25817 * 18 17 16 37 37 H 1.09001 * 109.47471 * 57.97685 * 19 17 16 38 38 H 1.09007 * 109.47215 * 177.97231 * 19 17 16 39 39 H 1.08995 * 109.47456 * 297.97636 * 19 17 16 40 40 H 1.09000 * 110.01286 * 188.43457 * 20 16 13 41 41 H 1.08999 * 110.48426 * 335.78205 * 21 20 16 42 42 H 1.09003 * 110.48053 * 98.42623 * 21 20 16 43 43 H 1.08997 * 110.72130 * 279.57535 * 22 21 20 44 44 H 1.09002 * 110.92079 * 156.29665 * 22 21 20 45 45 H 1.09000 * 110.48459 * 203.40186 * 23 22 21 46 46 H 1.09003 * 110.59705 * 80.81516 * 23 22 21 47 47 H 1.09002 * 110.03107 * 238.57378 * 24 20 16 48 48 H 1.09001 * 110.03414 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3840 7 6 3.8524 2.3607 -3.0850 8 7 5.0186 2.0811 -3.6250 9 14 2.6806 3.5323 -3.9473 10 1 2.9450 4.9208 -3.4922 11 1 2.8850 3.4452 -5.4156 12 1 1.2803 3.1622 -3.6196 13 16 2.4123 2.1202 1.4286 14 8 2.3057 3.5187 1.1998 15 8 1.6869 1.4415 2.4447 16 7 4.0145 1.8137 1.7136 17 6 4.4750 0.4354 1.8987 18 6 5.6001 0.1360 0.9061 19 6 4.9944 0.2587 3.3268 20 6 4.9714 2.9210 1.7806 21 6 4.6847 3.7929 3.0206 22 6 4.9667 5.2390 2.5406 23 6 4.4271 5.2294 1.0887 24 6 4.8081 3.8339 0.5528 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3617 1.8097 -1.9454 31 1 2.0920 3.1803 -1.0757 32 1 5.2703 2.4837 -4.4708 33 1 3.6459 -0.2509 1.7260 34 1 6.4824 0.7189 1.1703 35 1 5.8425 -0.9262 0.9411 36 1 5.2770 0.4018 -0.1005 37 1 4.2034 0.5067 4.0345 38 1 5.3036 -0.7760 3.4756 39 1 5.8463 0.9192 3.4880 40 1 5.9889 2.5326 1.8245 41 1 3.6440 3.6891 3.3275 42 1 5.3534 3.5244 3.8385 43 1 6.0364 5.4481 2.5537 44 1 4.4255 5.9636 3.1490 45 1 4.9077 6.0092 0.4979 46 1 3.3448 5.3586 1.0810 47 1 5.7466 3.8892 0.0012 48 1 4.0172 3.4529 -0.0932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337091809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -82.553670 kcal Electronic energy + Delta-G solvation = -28763.590706 eV Core-core repulsion = 25173.109230 eV Total energy + Delta-G solvation = -3590.481475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.60963 -36.87660 -36.18611 -35.47552 -34.98358 -32.65453 -30.72571 -30.25178 -28.19133 -27.24191 -26.80839 -26.64497 -22.94230 -21.58292 -21.02804 -20.51330 -20.04821 -17.92237 -16.98650 -16.93420 -16.69238 -16.02180 -15.37306 -14.56821 -14.26671 -14.24540 -13.91810 -13.77450 -13.53319 -13.24291 -12.93628 -12.70273 -12.52240 -12.38460 -11.99935 -11.99313 -11.94205 -11.57081 -11.44444 -11.33451 -11.20015 -11.12898 -11.01391 -10.97580 -10.80722 -10.71962 -10.62100 -10.49477 -10.38608 -10.32346 -10.18184 -9.99723 -9.65124 -9.48762 -8.65158 -8.53836 -8.08250 -6.15648 -4.14711 1.26852 3.25344 3.31966 3.36110 3.44845 4.04919 4.34863 4.86307 4.89368 5.07613 5.08916 5.18972 5.29264 5.34913 5.39864 5.45408 5.63595 5.69842 5.73959 5.80420 5.86305 5.94595 5.99756 6.00812 6.03051 6.07892 6.17788 6.18809 6.22240 6.23277 6.32029 6.42188 6.49965 6.55517 6.58576 6.67749 6.69176 6.83090 6.86833 6.99301 7.12373 7.20657 7.30319 7.46450 7.56947 8.42373 8.91434 9.45591 10.96060 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.007814 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.206345 B = 3582.464212 C = 4312.996017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.988 5.988 4 C 0.215 3.785 5 C -0.536 4.536 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.782 3.218 14 O -0.972 6.972 15 O -1.001 7.001 16 N -0.991 5.991 17 C 0.151 3.849 18 C -0.165 4.165 19 C -0.159 4.159 20 C 0.163 3.837 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.141 4.141 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -1.609 10.485 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.828 5.828 4 C 0.091 3.909 5 C -0.575 4.575 6 H 0.104 0.896 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.689 3.311 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 S 2.792 3.208 14 O -0.956 6.956 15 O -0.985 6.985 16 N -0.829 5.829 17 C 0.045 3.955 18 C -0.224 4.224 19 C -0.218 4.218 20 C 0.056 3.944 21 C -0.175 4.175 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.785 -1.088 10.862 10.944 hybrid contribution -0.135 0.296 -0.916 0.972 sum -0.920 -0.792 9.945 10.019 Atomic orbital electron populations 1.22214 0.96914 1.01573 1.02260 1.21066 0.93665 0.82863 1.02398 1.57547 1.78841 1.22901 1.23503 1.19583 0.98252 0.92070 0.80972 1.21469 1.00777 1.29102 1.06113 0.89551 1.24796 0.94806 0.95948 0.96827 1.69881 1.20421 1.43776 1.18828 0.87056 0.82340 0.82474 0.79192 1.19738 1.21200 1.18941 1.01969 0.72641 0.73304 0.72837 1.93552 1.86156 1.30262 1.85649 1.93539 1.70959 1.76747 1.57265 1.58120 1.26607 1.11492 1.86651 1.20689 0.97909 0.81821 0.95066 1.22254 0.98013 1.00706 1.01397 1.22183 1.01506 1.01440 0.96643 1.21361 0.93125 0.85390 0.94519 1.22857 1.01052 0.95972 0.97625 1.22424 1.00164 0.95611 0.97579 1.22388 1.02823 0.96549 0.94095 1.22696 1.03639 0.94732 0.96834 0.92646 0.92226 0.92132 0.89827 0.91836 0.94811 0.94003 0.92615 0.90419 0.92645 0.92554 0.89552 0.92301 0.92111 0.92353 0.89440 0.92340 0.91705 0.92007 0.92095 0.92885 0.89110 0.91726 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.13 5.94 -4.04 -0.02 2.10 16 3 N -0.99 -19.39 2.82 -115.66 -0.33 -19.72 16 4 C 0.21 4.79 3.84 -5.19 -0.02 4.77 16 5 C -0.54 -13.29 8.56 -34.44 -0.29 -13.58 16 6 H 0.09 2.24 5.93 -52.49 -0.31 1.93 16 7 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -24.93 13.96 55.43 0.77 -24.15 16 9 Si 0.86 20.28 27.47 -169.99 -4.67 15.61 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 13 S 2.78 54.35 4.44 -107.50 -0.48 53.87 16 14 O -0.97 -20.53 10.49 -57.17 -0.60 -21.13 16 15 O -1.00 -20.60 16.88 -57.17 -0.96 -21.56 16 16 N -0.99 -16.92 2.62 -99.13 -0.26 -17.18 16 17 C 0.15 2.26 3.20 -67.94 -0.22 2.04 16 18 C -0.17 -2.47 8.95 37.16 0.33 -2.14 16 19 C -0.16 -1.99 9.23 37.15 0.34 -1.64 16 20 C 0.16 2.65 2.48 -66.81 -0.17 2.49 16 21 C -0.14 -2.03 6.11 -25.03 -0.15 -2.18 16 22 C -0.12 -1.71 6.91 -24.70 -0.17 -1.88 16 23 C -0.12 -2.07 6.31 -25.07 -0.16 -2.23 16 24 C -0.14 -2.65 5.67 -25.62 -0.15 -2.79 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.06 0.97 6.01 -51.93 -0.31 0.66 16 30 H 0.03 0.75 7.17 -51.93 -0.37 0.38 16 31 H 0.04 0.98 5.90 -51.93 -0.31 0.67 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.08 1.15 6.08 -51.93 -0.32 0.84 16 34 H 0.05 0.78 6.93 -51.93 -0.36 0.42 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.09 1.60 6.02 -51.93 -0.31 1.29 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.68 7.67 -51.93 -0.40 0.29 16 40 H 0.09 1.30 6.36 -51.93 -0.33 0.97 16 41 H 0.06 0.95 6.93 -51.93 -0.36 0.59 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.73 6.26 -51.93 -0.33 1.41 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.10 2.21 3.32 -51.93 -0.17 2.04 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -28.76 362.92 -9.56 -38.32 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.11 Total: 5.71 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.39 Total: -15.24 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.19 Total: -61.04 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.56 Total: -42.69 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.48 Total: 53.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.76 -9.56 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.236 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds