Wall clock time and date at job start Tue Mar 31 2020 12:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47019 * 2 1 4 4 C 1.46503 * 119.99885 * 274.99996 * 3 2 1 5 5 C 1.50697 * 109.47283 * 274.99988 * 4 3 2 6 6 H 1.07997 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99748 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99777 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00477 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47263 * 89.99726 * 9 7 5 11 11 H 1.48500 * 109.47388 * 210.00054 * 9 7 5 12 12 H 1.48505 * 109.46946 * 329.99986 * 9 7 5 13 13 S 1.65593 * 120.00384 * 95.00348 * 3 2 1 14 14 O 1.42102 * 106.40634 * 203.54069 * 13 3 2 15 15 O 1.42100 * 106.39831 * 336.45752 * 13 3 2 16 16 N 1.65600 * 107.22038 * 89.99519 * 13 3 2 17 17 C 1.46491 * 120.00286 * 297.67262 * 16 13 3 18 18 C 1.53000 * 109.47063 * 125.09142 * 17 16 13 19 19 C 1.52992 * 109.47397 * 245.09267 * 17 16 13 20 20 C 1.46502 * 119.99577 * 117.67054 * 16 13 3 21 21 C 1.54269 * 110.03232 * 67.04536 * 20 16 13 22 22 C 1.54962 * 104.15994 * 217.13154 * 21 20 16 23 23 C 1.54893 * 102.77597 * 37.89057 * 22 21 20 24 24 C 1.53871 * 110.03435 * 309.82880 * 20 16 13 25 25 H 1.09002 * 109.46727 * 299.99891 * 1 2 3 26 26 H 1.09000 * 109.47438 * 59.99768 * 1 2 3 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46727 * 240.00109 * 2 1 3 29 29 H 1.09000 * 109.47438 * 120.00232 * 2 1 3 30 30 H 1.09007 * 109.47372 * 35.00284 * 4 3 2 31 31 H 1.09000 * 109.47066 * 154.99507 * 4 3 2 32 32 H 0.97002 * 119.99862 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47006 * 5.09601 * 17 16 13 34 34 H 1.08995 * 109.47082 * 68.26720 * 18 17 16 35 35 H 1.09007 * 109.47277 * 188.26649 * 18 17 16 36 36 H 1.09002 * 109.47270 * 308.25817 * 18 17 16 37 37 H 1.09001 * 109.47471 * 57.97685 * 19 17 16 38 38 H 1.09007 * 109.47215 * 177.97231 * 19 17 16 39 39 H 1.08995 * 109.47456 * 297.97636 * 19 17 16 40 40 H 1.09000 * 110.01286 * 188.43457 * 20 16 13 41 41 H 1.08999 * 110.48426 * 335.78205 * 21 20 16 42 42 H 1.09003 * 110.48053 * 98.42623 * 21 20 16 43 43 H 1.08997 * 110.72130 * 279.57535 * 22 21 20 44 44 H 1.09002 * 110.92079 * 156.29665 * 22 21 20 45 45 H 1.09000 * 110.48459 * 203.40186 * 23 22 21 46 46 H 1.09003 * 110.59705 * 80.81516 * 23 22 21 47 47 H 1.09002 * 110.03107 * 238.57378 * 24 20 16 48 48 H 1.09001 * 110.03414 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3840 7 6 3.8524 2.3607 -3.0850 8 7 5.0186 2.0811 -3.6250 9 14 2.6806 3.5323 -3.9473 10 1 2.9450 4.9208 -3.4922 11 1 2.8850 3.4452 -5.4156 12 1 1.2803 3.1622 -3.6196 13 16 2.4123 2.1202 1.4286 14 8 2.3057 3.5187 1.1998 15 8 1.6869 1.4415 2.4447 16 7 4.0145 1.8137 1.7136 17 6 4.4750 0.4354 1.8987 18 6 5.6001 0.1360 0.9061 19 6 4.9944 0.2587 3.3268 20 6 4.9714 2.9210 1.7806 21 6 4.6847 3.7929 3.0206 22 6 4.9667 5.2390 2.5406 23 6 4.4271 5.2294 1.0887 24 6 4.8081 3.8339 0.5528 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3617 1.8097 -1.9454 31 1 2.0920 3.1803 -1.0757 32 1 5.2703 2.4837 -4.4708 33 1 3.6459 -0.2509 1.7260 34 1 6.4824 0.7189 1.1703 35 1 5.8425 -0.9262 0.9411 36 1 5.2770 0.4018 -0.1005 37 1 4.2034 0.5067 4.0345 38 1 5.3036 -0.7760 3.4756 39 1 5.8463 0.9192 3.4880 40 1 5.9889 2.5326 1.8245 41 1 3.6440 3.6891 3.3275 42 1 5.3534 3.5244 3.8385 43 1 6.0364 5.4481 2.5537 44 1 4.4255 5.9636 3.1490 45 1 4.9077 6.0092 0.4979 46 1 3.3448 5.3586 1.0810 47 1 5.7466 3.8892 0.0012 48 1 4.0172 3.4529 -0.0932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337091809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:22 Heat of formation + Delta-G solvation = -99.816108 kcal Electronic energy + Delta-G solvation = -28764.339261 eV Core-core repulsion = 25173.109230 eV Total energy + Delta-G solvation = -3591.230031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.92149 -38.38419 -37.76803 -36.92602 -36.41768 -34.59949 -31.98706 -31.79947 -29.50181 -28.93424 -28.04330 -27.86499 -24.57426 -23.18331 -22.25715 -21.83241 -21.38742 -19.45102 -18.91069 -18.43610 -18.12817 -17.46336 -16.88525 -16.20163 -15.78822 -15.67022 -15.28660 -15.07574 -14.86649 -14.53691 -14.50147 -14.24134 -14.06939 -13.74647 -13.60743 -13.51144 -13.06666 -13.02766 -12.88809 -12.75099 -12.69102 -12.64810 -12.52179 -12.32551 -12.20621 -12.16008 -12.02350 -11.89588 -11.82900 -11.73801 -11.60158 -11.42549 -11.27749 -11.07143 -10.69135 -9.91315 -9.67360 -8.20568 -6.20597 -0.24773 1.35527 1.40675 1.45306 1.97808 2.37970 2.54970 3.13819 3.45799 3.59212 3.81996 3.82611 3.94946 4.12113 4.22466 4.28627 4.39327 4.44547 4.47601 4.55088 4.64428 4.66833 4.75530 4.80403 4.86149 4.89806 4.94563 4.95298 4.98342 5.03201 5.04221 5.09359 5.14340 5.27169 5.30152 5.34392 5.35446 5.42415 5.48989 5.52748 5.58595 5.64022 5.73230 5.83505 6.02647 6.41971 6.88058 7.41454 8.93346 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.007814 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.206345 B = 3582.464212 C = 4312.996017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.993 5.993 4 C 0.224 3.776 5 C -0.517 4.517 6 H 0.069 0.931 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.250 1.250 13 S 2.786 3.214 14 O -0.992 6.992 15 O -1.012 7.012 16 N -0.990 5.990 17 C 0.143 3.857 18 C -0.156 4.156 19 C -0.152 4.152 20 C 0.162 3.838 21 C -0.134 4.134 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.147 4.147 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -2.129 12.241 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.833 5.833 4 C 0.100 3.900 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.167 4.167 8 N -0.571 5.571 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.173 1.173 13 S 2.797 3.203 14 O -0.976 6.976 15 O -0.996 6.996 16 N -0.829 5.829 17 C 0.038 3.962 18 C -0.214 4.214 19 C -0.211 4.211 20 C 0.056 3.944 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.186 4.186 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.640 -1.625 12.632 12.752 hybrid contribution -0.156 0.398 -1.432 1.495 sum -0.797 -1.227 11.200 11.295 Atomic orbital electron populations 1.22199 0.95462 1.03443 1.01552 1.21318 0.94963 0.81478 1.03088 1.57526 1.79405 1.23937 1.22389 1.19299 0.96844 0.91809 0.82097 1.21613 1.01284 1.27375 1.05328 0.91262 1.25387 0.95921 0.97506 0.97839 1.69988 1.22125 1.45571 1.19444 0.86341 0.81632 0.80628 0.78263 1.20125 1.21069 1.17340 1.01722 0.73231 0.72732 0.72631 1.93531 1.86703 1.31542 1.85828 1.93519 1.71772 1.76862 1.57430 1.57999 1.25754 1.12738 1.86401 1.20938 0.97894 0.80521 0.96866 1.22142 0.98155 1.02244 0.98879 1.22132 1.01540 1.03300 0.94124 1.21461 0.93787 0.85064 0.94083 1.22879 1.00797 0.95929 0.97690 1.22426 1.01635 0.95675 0.95221 1.22359 1.01515 0.95752 0.96573 1.22692 1.01851 0.96443 0.97630 0.93571 0.92655 0.89024 0.89951 0.90348 0.94376 0.95086 0.92815 0.90581 0.91860 0.90340 0.93721 0.92955 0.89738 0.91216 0.87590 0.94042 0.88512 0.89636 0.90796 0.92369 0.91472 0.92788 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.24 71.98 0.74 -4.11 16 2 C 0.12 3.84 5.94 86.38 0.51 4.35 16 3 N -0.99 -39.00 2.82 -519.83 -1.47 -40.46 16 4 C 0.22 10.10 3.84 85.63 0.33 10.43 16 5 C -0.52 -26.16 8.56 25.60 0.22 -25.94 16 6 H 0.07 3.72 5.93 -2.91 -0.02 3.70 16 7 C 0.03 1.75 5.47 84.65 0.46 2.22 16 8 N -0.93 -53.39 13.96 21.45 0.30 -53.09 16 9 Si 0.91 42.04 27.47 68.60 1.88 43.93 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 S 2.79 108.50 4.44 -56.49 -0.25 108.25 16 14 O -0.99 -42.52 10.49 -128.00 -1.34 -43.87 16 15 O -1.01 -40.90 16.88 -128.00 -2.16 -43.06 16 16 N -0.99 -33.00 2.62 -467.53 -1.22 -34.22 16 17 C 0.14 4.05 3.20 44.99 0.14 4.19 16 18 C -0.16 -4.47 8.95 71.98 0.64 -3.83 16 19 C -0.15 -3.34 9.23 71.98 0.66 -2.67 16 20 C 0.16 5.10 2.48 45.71 0.11 5.22 16 21 C -0.13 -3.69 6.11 31.70 0.19 -3.50 16 22 C -0.11 -2.95 6.91 31.91 0.22 -2.73 16 23 C -0.12 -4.24 6.31 31.67 0.20 -4.04 16 24 C -0.15 -5.60 5.67 31.32 0.18 -5.42 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 29 H 0.08 2.32 6.01 -2.39 -0.01 2.30 16 30 H 0.04 1.69 7.17 -2.38 -0.02 1.67 16 31 H 0.03 1.48 5.90 -2.39 -0.01 1.47 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.08 2.15 6.08 -2.38 -0.01 2.14 16 34 H 0.06 1.68 6.93 -2.39 -0.02 1.67 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.04 1.68 6.02 -2.39 -0.01 1.66 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.37 7.67 -2.39 -0.02 1.35 16 40 H 0.11 2.92 6.36 -2.39 -0.02 2.91 16 41 H 0.04 1.29 6.93 -2.39 -0.02 1.27 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 2.62 6.26 -2.39 -0.01 2.60 16 47 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.07 3.15 3.32 -2.39 -0.01 3.14 16 Total: -1.00 -63.04 362.92 1.24 -61.80 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.88 Total: 26.56 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.62 Total: -25.84 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -2.39 Total: -127.78 kcal Atomic # 8 Polarization: -83.42 SS G_CDS: -3.50 Total: -86.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Atomic # 16 Polarization: 108.50 SS G_CDS: -0.25 Total: 108.25 kcal Total: -63.04 1.24 -61.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.018 kcal (2) G-P(sol) polarization free energy of solvation -63.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds