Wall clock time and date at job start Tue Mar 31 2020 12:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47088 * 2 1 4 4 C 1.46497 * 119.99972 * 84.99961 * 3 2 1 5 5 C 1.50694 * 109.47115 * 84.99899 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65601 * 119.99689 * 264.99811 * 3 2 1 14 14 O 1.42095 * 106.40327 * 23.54214 * 13 3 2 15 15 O 1.42104 * 106.39941 * 156.46006 * 13 3 2 16 16 N 1.65595 * 107.21482 * 269.99791 * 13 3 2 17 17 C 1.46504 * 120.00135 * 65.00673 * 16 13 3 18 18 H 1.09005 * 109.47184 * 24.99633 * 17 16 13 19 19 C 1.52999 * 109.47333 * 144.99632 * 17 16 13 20 20 C 1.52996 * 109.47165 * 59.99943 * 19 17 16 21 21 H 1.08998 * 109.47342 * 300.00156 * 20 19 17 22 22 C 1.52999 * 109.47165 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47149 * 60.00077 * 20 19 17 24 24 C 1.52999 * 109.47024 * 300.00009 * 23 20 19 25 25 H 1.09011 * 109.46909 * 300.00020 * 24 23 20 26 26 C 1.53002 * 109.47024 * 179.97438 * 24 23 20 27 27 C 1.52998 * 109.46795 * 264.99840 * 17 16 13 28 28 H 1.08997 * 109.47368 * 300.00184 * 1 2 3 29 29 H 1.09005 * 109.47070 * 60.00066 * 1 2 3 30 30 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47368 * 239.99816 * 2 1 3 32 32 H 1.09000 * 109.46671 * 119.99700 * 2 1 3 33 33 H 1.09007 * 109.47078 * 324.99538 * 4 3 2 34 34 H 1.09003 * 109.46733 * 205.00261 * 4 3 2 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00456 * 245.00056 * 16 13 3 37 37 H 1.08998 * 109.47118 * 180.02562 * 19 17 16 38 38 H 1.09009 * 109.47004 * 300.00072 * 19 17 16 39 39 H 1.09009 * 109.47004 * 60.00129 * 22 20 19 40 40 H 1.08997 * 109.47337 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47118 * 300.00293 * 22 20 19 42 42 H 1.08998 * 109.46934 * 59.99829 * 23 20 19 43 43 H 1.08997 * 109.46958 * 179.97438 * 23 20 19 44 44 H 1.08997 * 109.46958 * 59.99897 * 26 24 23 45 45 H 1.09000 * 109.47088 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.46934 * 299.99820 * 26 24 23 47 47 H 1.08993 * 109.47792 * 59.99787 * 27 17 16 48 48 H 1.09005 * 109.46829 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8823 6 1 4.1720 1.1111 1.3840 7 6 3.8524 2.3606 3.0849 8 7 3.0274 3.1856 3.6920 9 14 5.5088 1.9635 3.8518 10 1 5.6506 2.7010 5.1330 11 1 5.5984 0.5036 4.1080 12 1 6.5943 2.3708 2.9239 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7136 17 6 4.4658 0.4412 -1.9568 18 1 3.6373 -0.1499 -2.3472 19 6 5.6082 0.4527 -2.9744 20 6 6.7710 1.2824 -2.4265 21 1 6.4352 2.3035 -2.2456 22 6 7.9131 1.2945 -3.4444 23 6 7.2627 0.6674 -1.1147 24 6 6.1203 0.6558 -0.0970 25 1 5.7845 1.6771 0.0839 26 6 6.6119 0.0402 1.2146 27 6 4.9574 -0.1738 -0.6450 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8098 1.9453 34 1 2.0921 3.1803 1.0755 35 1 3.2790 3.5875 4.5382 36 1 4.6542 2.5427 -1.7196 37 1 5.9436 -0.5684 -3.1556 38 1 5.2578 0.8910 -3.9090 39 1 7.5625 1.7330 -4.3788 40 1 8.7414 1.8859 -3.0542 41 1 8.2490 0.2735 -3.6257 42 1 7.5984 -0.3537 -1.2956 43 1 8.0914 1.2582 -0.7245 44 1 7.4405 0.6309 1.6051 45 1 5.7981 0.0324 1.9398 46 1 6.9473 -0.9810 1.0334 47 1 4.1436 -0.1821 0.0801 48 1 5.2937 -1.1948 -0.8259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337103264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:08 Heat of formation + Delta-G solvation = -108.513195 kcal Electronic energy + Delta-G solvation = -28231.672958 eV Core-core repulsion = 24640.065793 eV Total energy + Delta-G solvation = -3591.607165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.35998 -36.59744 -36.01585 -35.15997 -33.98583 -33.32760 -32.64365 -29.90948 -29.28056 -26.69114 -26.43915 -26.09616 -23.10717 -21.91364 -21.66184 -20.36850 -19.77327 -18.33669 -17.07345 -16.82282 -16.28356 -15.89765 -15.28510 -15.06100 -14.67555 -14.31474 -13.86445 -13.80707 -13.51643 -13.29992 -12.87461 -12.67749 -12.48616 -12.22755 -12.21490 -11.98596 -11.93053 -11.72586 -11.67794 -11.46443 -11.42792 -11.30877 -11.25032 -11.05883 -10.87937 -10.76313 -10.63585 -10.43910 -10.36124 -10.15093 -10.04014 -9.93422 -9.80569 -9.49421 -8.97225 -8.45382 -7.99852 -6.07566 -4.12652 1.37672 3.24942 3.30771 3.32956 3.57807 4.22731 4.37395 4.77411 4.79323 4.82783 5.06092 5.23068 5.26195 5.28137 5.39634 5.47457 5.53292 5.59884 5.65378 5.73803 5.77279 5.81625 5.83675 5.86300 5.90352 5.97081 6.04479 6.11437 6.15264 6.23702 6.25413 6.32752 6.34532 6.39479 6.56518 6.67000 6.68499 6.71068 6.74494 6.89311 7.30618 7.47252 7.55785 7.72661 7.92562 8.21516 8.94357 9.52855 11.00874 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.008439 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.006641 B = 3316.958089 C = 5119.731557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.990 5.990 4 C 0.246 3.754 5 C -0.544 4.544 6 H 0.082 0.918 7 C 0.065 3.935 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.294 1.294 11 H -0.275 1.275 12 H -0.271 1.271 13 S 2.786 3.214 14 O -1.002 7.002 15 O -0.983 6.983 16 N -1.118 6.118 17 C 0.156 3.844 18 H 0.084 0.916 19 C -0.114 4.114 20 C -0.094 4.094 21 H 0.071 0.929 22 C -0.145 4.145 23 C -0.108 4.108 24 C -0.088 4.088 25 H 0.087 0.913 26 C -0.153 4.153 27 C -0.139 4.139 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -8.053 -10.267 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.832 5.832 4 C 0.124 3.876 5 C -0.583 4.583 6 H 0.099 0.901 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.220 1.220 11 H -0.201 1.201 12 H -0.196 1.196 13 S 2.794 3.206 14 O -0.986 6.986 15 O -0.967 6.967 16 N -0.877 5.877 17 C 0.048 3.952 18 H 0.102 0.898 19 C -0.153 4.153 20 C -0.113 4.113 21 H 0.089 0.911 22 C -0.202 4.202 23 C -0.145 4.145 24 C -0.106 4.106 25 H 0.105 0.895 26 C -0.210 4.210 27 C -0.178 4.178 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.347 -7.571 -10.659 14.126 hybrid contribution 1.527 -0.048 1.002 1.827 sum 6.874 -7.619 -9.657 14.091 Atomic orbital electron populations 1.22204 0.97015 1.01300 1.02393 1.21000 0.93685 0.83132 1.01918 1.57685 1.78642 1.22709 1.24160 1.19175 0.97375 0.92169 0.78882 1.21885 1.02444 1.28078 1.05863 0.90054 1.24926 0.96793 0.94999 0.97046 1.69930 1.35940 1.30051 1.17082 0.86898 0.84917 0.78295 0.78596 1.22045 1.20114 1.19589 1.01679 0.72971 0.73004 0.72990 1.93533 1.70988 1.76548 1.57524 1.93584 1.85911 1.31226 1.85987 1.56057 1.28907 1.14246 1.88518 1.20687 0.97051 0.82233 0.95187 0.89788 1.21813 0.94870 1.00629 0.97999 1.21120 0.95022 0.99920 0.95200 0.91066 1.21816 0.98186 1.01467 0.98753 1.21680 0.97950 1.00393 0.94510 1.21034 0.94237 1.01452 0.93872 0.89489 1.21997 1.01443 0.99617 0.97949 1.22257 0.99801 0.98299 0.97395 0.92080 0.92677 0.92463 0.92037 0.90241 0.94570 0.93355 0.92740 0.75447 0.91060 0.91555 0.92913 0.92892 0.92911 0.92386 0.92436 0.93353 0.91392 0.93498 0.89252 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.14 4.92 -4.04 -0.02 2.12 16 3 N -0.99 -19.43 2.49 -115.66 -0.29 -19.72 16 4 C 0.25 5.87 5.43 -5.20 -0.03 5.84 16 5 C -0.54 -13.30 9.38 -34.44 -0.32 -13.63 16 6 H 0.08 1.79 2.60 -52.49 -0.14 1.66 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 9 Si 0.88 20.22 26.38 -169.99 -4.48 15.73 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.08 6.96 56.52 0.39 -5.69 16 12 H -0.27 -5.96 6.88 56.52 0.39 -5.57 16 13 S 2.79 54.06 6.08 -107.50 -0.65 53.40 16 14 O -1.00 -20.09 16.45 -57.17 -0.94 -21.03 16 15 O -0.98 -22.80 16.69 -57.17 -0.95 -23.75 16 16 N -1.12 -17.71 4.80 -4.89 -0.02 -17.74 16 17 C 0.16 2.10 3.14 -67.93 -0.21 1.89 16 18 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 19 C -0.11 -1.27 4.91 -26.73 -0.13 -1.40 16 20 C -0.09 -1.05 2.53 -90.62 -0.23 -1.28 16 21 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 22 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 23 C -0.11 -1.31 4.49 -26.73 -0.12 -1.43 16 24 C -0.09 -1.30 1.66 -90.62 -0.15 -1.45 16 25 H 0.09 1.52 6.99 -51.92 -0.36 1.15 16 26 C -0.15 -2.40 8.04 37.16 0.30 -2.10 16 27 C -0.14 -1.93 4.68 -26.73 -0.12 -2.06 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.90 7.24 -51.93 -0.38 0.53 16 32 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 33 H 0.04 0.91 8.11 -51.92 -0.42 0.49 16 34 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.41 6.18 6.81 -34.47 -0.23 5.95 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 45 H 0.07 1.23 4.56 -51.93 -0.24 0.99 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.42 4.88 -51.93 -0.25 1.17 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.05 364.93 -9.67 -39.72 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.15 Total: 7.48 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.42 Total: -15.17 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.42 Total: -61.89 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.89 Total: -44.78 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.48 Total: 15.73 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.65 Total: 53.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.05 -9.67 -39.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.791 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds