Wall clock time and date at job start Tue Mar 31 2020 12:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46998 * 2 1 4 4 C 1.46497 * 119.99975 * 279.28809 * 3 2 1 5 5 C 1.50706 * 109.47148 * 274.99687 * 4 3 2 6 6 H 1.07999 * 119.99928 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00165 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99817 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47153 * 60.00342 * 9 7 5 11 11 H 1.48503 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47120 * 299.99734 * 9 7 5 13 13 S 1.65599 * 119.99968 * 99.28654 * 3 2 1 14 14 O 1.42101 * 106.40066 * 320.92205 * 13 3 2 15 15 O 1.42097 * 106.40418 * 188.00305 * 13 3 2 16 16 N 1.65596 * 107.21771 * 74.46072 * 13 3 2 17 17 C 1.46503 * 120.00081 * 65.52834 * 16 13 3 18 18 C 1.53001 * 109.47224 * 215.37687 * 17 16 13 19 19 C 1.52994 * 109.47177 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.46967 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47234 * 299.99823 * 19 18 17 22 22 C 1.53009 * 109.47327 * 59.99662 * 19 18 17 23 23 C 1.52998 * 109.46920 * 300.00254 * 22 19 18 24 24 H 1.09003 * 109.46906 * 300.00027 * 23 22 19 25 25 C 1.52999 * 109.47273 * 179.97438 * 23 22 19 26 26 C 1.52994 * 109.47328 * 59.99747 * 23 22 19 27 27 H 1.08997 * 109.47395 * 64.98525 * 1 2 3 28 28 H 1.08999 * 109.46973 * 184.98156 * 1 2 3 29 29 H 1.08996 * 109.47382 * 304.98382 * 1 2 3 30 30 H 1.08999 * 109.46871 * 240.00589 * 2 1 3 31 31 H 1.08999 * 109.47165 * 120.00043 * 2 1 3 32 32 H 1.08998 * 109.47626 * 35.00205 * 4 3 2 33 33 H 1.08998 * 109.46993 * 155.00228 * 4 3 2 34 34 H 0.97002 * 119.99628 * 180.02562 * 8 7 5 35 35 H 0.97007 * 120.00377 * 245.53062 * 16 13 3 36 36 H 1.09003 * 109.46771 * 335.37029 * 17 16 13 37 37 H 1.08994 * 109.47751 * 59.99189 * 18 17 16 38 38 H 1.09003 * 109.46709 * 299.99379 * 18 17 16 39 39 H 1.09001 * 109.47460 * 59.99914 * 21 19 18 40 40 H 1.09006 * 109.47318 * 180.02562 * 21 19 18 41 41 H 1.09004 * 109.46863 * 299.99654 * 21 19 18 42 42 H 1.08999 * 109.46867 * 60.00042 * 22 19 18 43 43 H 1.08992 * 109.47370 * 180.02562 * 22 19 18 44 44 H 1.09006 * 109.46953 * 59.99678 * 25 23 22 45 45 H 1.08999 * 109.47274 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46738 * 299.99926 * 25 23 22 47 47 H 1.08996 * 109.47532 * 60.00105 * 26 23 22 48 48 H 1.08999 * 109.47406 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0694 2.1401 -1.2521 5 6 3.3588 1.8370 -1.9709 6 1 4.0690 1.1477 -1.5386 7 6 3.6314 2.4388 -3.1811 8 7 2.7664 3.2778 -3.7078 9 14 5.2293 2.0625 -4.0724 10 1 5.2995 0.6095 -4.3706 11 1 5.2812 2.8319 -5.3416 12 1 6.3778 2.4477 -3.2135 13 16 2.5125 2.0847 1.4153 14 8 1.6077 1.6453 2.4191 15 8 2.7426 3.4561 1.1229 16 7 3.9867 1.4343 1.7975 17 6 5.1439 1.6854 0.9349 18 6 6.0345 0.4418 0.9015 19 6 7.2427 0.7038 0.0002 20 1 7.8774 -0.1821 -0.0233 21 6 6.7622 1.0251 -1.4164 22 6 8.0410 1.8882 0.5488 23 6 7.1504 3.1318 0.5822 24 1 6.8079 3.3606 -0.4270 25 6 7.9483 4.3161 1.1314 26 6 5.9422 2.8698 1.4835 27 1 -0.3634 0.4345 -0.9312 28 1 -0.3633 -1.0238 0.0892 29 1 -0.3634 0.5892 0.8419 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.2266 1.8576 -1.8829 33 1 2.0177 3.2065 -1.0329 34 1 2.9580 3.7010 -4.5594 35 1 4.0840 0.8869 2.5924 36 1 4.8018 1.9145 -0.0744 37 1 5.4660 -0.4019 0.5103 38 1 6.3766 0.2127 1.9107 39 1 6.1277 1.9111 -1.3926 40 1 7.6230 1.2113 -2.0586 41 1 6.1935 0.1813 -1.8072 42 1 8.3834 1.6593 1.5580 43 1 8.9015 2.0752 -0.0935 44 1 8.8094 4.5029 0.4896 45 1 7.3137 5.2019 1.1556 46 1 8.2904 4.0869 2.1406 47 1 6.2845 2.6409 2.4927 48 1 5.3079 3.7559 1.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337103265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:42 Heat of formation + Delta-G solvation = -104.807263 kcal Electronic energy + Delta-G solvation = -28166.482946 eV Core-core repulsion = 24575.036482 eV Total energy + Delta-G solvation = -3591.446464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.32180 -36.54299 -36.01332 -35.12077 -34.38724 -32.93241 -32.68535 -29.90906 -28.80980 -26.89087 -26.38270 -26.23491 -23.16149 -21.96015 -21.56307 -20.89863 -19.12254 -18.25404 -17.08379 -16.80304 -16.35207 -15.87190 -15.29851 -14.82497 -14.55521 -14.25394 -13.86461 -13.73324 -13.52366 -13.35172 -13.15510 -12.86655 -12.45436 -12.12417 -12.01296 -11.93931 -11.80110 -11.66900 -11.53268 -11.43010 -11.31667 -11.27517 -11.19531 -11.01841 -10.84967 -10.78375 -10.58211 -10.38794 -10.32079 -10.10862 -10.07371 -9.94148 -9.66322 -9.46607 -8.95561 -8.45693 -8.03972 -6.10781 -4.17357 1.35741 3.24724 3.29889 3.33722 3.57246 4.21815 4.35437 4.85995 4.94944 4.97556 5.16180 5.21830 5.32025 5.34833 5.39525 5.53833 5.62758 5.66329 5.73100 5.81166 5.84965 5.85689 5.88360 5.95353 5.99395 6.05193 6.12691 6.15957 6.23477 6.24540 6.33444 6.35596 6.45912 6.55219 6.60038 6.65506 6.67680 6.70767 6.80481 6.92207 7.33843 7.41033 7.49721 7.70745 7.86477 8.16340 8.85650 9.47871 10.97054 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.008073 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.251584 B = 3467.458534 C = 4970.367474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 N -0.993 5.993 4 C 0.245 3.755 5 C -0.543 4.543 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.253 1.253 13 S 2.782 3.218 14 O -1.005 7.005 15 O -0.973 6.973 16 N -1.127 6.127 17 C 0.136 3.864 18 C -0.114 4.114 19 C -0.088 4.088 20 H 0.066 0.934 21 C -0.166 4.166 22 C -0.107 4.107 23 C -0.096 4.096 24 H 0.082 0.918 25 C -0.144 4.144 26 C -0.127 4.127 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -5.745 8.218 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.835 5.835 4 C 0.123 3.877 5 C -0.582 4.582 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.220 1.220 12 H -0.177 1.177 13 S 2.790 3.210 14 O -0.989 6.989 15 O -0.957 6.957 16 N -0.883 5.883 17 C 0.030 3.970 18 C -0.153 4.153 19 C -0.107 4.107 20 H 0.084 0.916 21 C -0.222 4.222 22 C -0.145 4.145 23 C -0.115 4.115 24 H 0.100 0.900 25 C -0.201 4.201 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.989 -4.823 8.387 11.935 hybrid contribution 1.104 -0.800 -0.566 1.476 sum 8.093 -5.622 7.822 12.581 Atomic orbital electron populations 1.22193 0.96868 1.01166 1.02611 1.20930 0.93825 0.82963 1.01686 1.57727 1.77682 1.22503 1.25570 1.19188 0.97679 0.91692 0.79148 1.21581 1.04287 1.27040 1.05281 0.91273 1.24909 0.96710 0.94734 0.97120 1.69920 1.35301 1.28499 1.18767 0.87138 0.85013 0.78481 0.79288 1.20264 1.22033 1.17745 1.01883 0.72654 0.73830 0.72647 1.93548 1.62460 1.83504 1.59351 1.93585 1.85310 1.32119 1.84675 1.56122 1.26341 1.69392 1.36459 1.21206 0.85551 0.94235 0.96002 1.21805 0.96250 0.97814 0.99462 1.21089 0.96052 0.97793 0.95739 0.91552 1.22417 1.01368 1.03501 0.94941 1.21629 0.97707 0.94685 1.00449 1.21173 0.95086 0.94624 1.00667 0.90012 1.21802 0.99767 0.98201 1.00378 1.22067 0.96682 0.99288 0.98552 0.92085 0.92601 0.92401 0.90415 0.92400 0.94455 0.93165 0.92601 0.76527 0.85695 0.91404 0.92222 0.89815 0.93247 0.92409 0.92358 0.92255 0.93010 0.92527 0.93162 0.92458 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.20 37.16 0.38 -2.29 16 2 C 0.13 2.24 6.15 -4.04 -0.02 2.22 16 3 N -0.99 -19.95 2.83 -115.66 -0.33 -20.28 16 4 C 0.25 5.90 5.33 -5.19 -0.03 5.87 16 5 C -0.54 -13.37 7.95 -34.44 -0.27 -13.64 16 6 H 0.07 1.58 5.08 -52.49 -0.27 1.32 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 9 Si 0.87 19.47 26.49 -169.99 -4.50 14.97 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.25 -5.15 4.90 56.52 0.28 -4.87 16 13 S 2.78 54.92 5.89 -107.50 -0.63 54.29 16 14 O -1.00 -20.78 17.64 -57.17 -1.01 -21.79 16 15 O -0.97 -22.63 15.82 -57.17 -0.90 -23.53 16 16 N -1.13 -17.87 5.53 -4.89 -0.03 -17.89 16 17 C 0.14 2.21 2.40 -67.93 -0.16 2.04 16 18 C -0.11 -1.54 4.98 -26.73 -0.13 -1.67 16 19 C -0.09 -1.16 3.19 -90.62 -0.29 -1.45 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.17 -2.65 4.93 37.15 0.18 -2.47 16 22 C -0.11 -1.33 4.73 -26.73 -0.13 -1.46 16 23 C -0.10 -1.38 2.45 -90.62 -0.22 -1.60 16 24 H 0.08 1.35 6.43 -51.93 -0.33 1.01 16 25 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 26 C -0.13 -1.95 4.81 -26.73 -0.13 -2.08 16 27 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.40 5.21 8.84 -34.47 -0.30 4.91 16 36 H 0.13 2.41 3.21 -51.93 -0.17 2.25 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.54 2.56 -51.93 -0.13 1.41 16 40 H 0.05 0.75 7.78 -51.93 -0.40 0.34 16 41 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.34 7.68 -51.93 -0.40 0.95 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -29.66 364.25 -10.09 -39.75 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.33 Total: 9.30 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.58 Total: -16.26 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.38 Total: -62.21 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.91 Total: -45.33 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.50 Total: 14.97 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.63 Total: 54.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.66 -10.09 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.056 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds