Wall clock time and date at job start Tue Mar 31 2020 12:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47526 * 2 1 4 4 C 1.46499 * 120.00487 * 275.00094 * 3 2 1 5 5 C 1.50697 * 109.47116 * 279.18953 * 4 3 2 6 6 H 1.08004 * 120.00157 * 4.44423 * 5 4 3 7 7 C 1.37877 * 119.99983 * 184.43890 * 5 4 3 8 8 N 1.31522 * 119.99986 * 5.86945 * 7 5 4 9 9 Si 1.86804 * 120.00224 * 185.87143 * 7 5 4 10 10 H 1.48495 * 109.47143 * 94.60196 * 9 7 5 11 11 H 1.48501 * 109.47036 * 214.60425 * 9 7 5 12 12 H 1.48502 * 109.46764 * 334.59919 * 9 7 5 13 13 S 1.65606 * 119.99888 * 94.99973 * 3 2 1 14 14 O 1.42106 * 106.39892 * 338.16898 * 13 3 2 15 15 O 1.42096 * 106.40454 * 205.24736 * 13 3 2 16 16 N 1.65597 * 107.21683 * 91.70402 * 13 3 2 17 17 C 1.46505 * 119.99700 * 67.16050 * 16 13 3 18 18 C 1.53003 * 109.46991 * 97.30187 * 17 16 13 19 19 C 1.53002 * 109.47138 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.47141 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.46863 * 59.99687 * 19 18 17 22 22 C 1.53000 * 109.47099 * 299.99978 * 19 18 17 23 23 C 1.53003 * 109.47107 * 60.00003 * 22 19 18 24 24 H 1.08997 * 109.47637 * 60.00013 * 23 22 19 25 25 C 1.53000 * 109.47107 * 180.02562 * 23 22 19 26 26 C 1.53000 * 109.47025 * 217.30030 * 17 16 13 27 27 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47236 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47023 * 59.99755 * 1 2 3 30 30 H 1.09009 * 109.46747 * 240.00367 * 2 1 3 31 31 H 1.08994 * 109.47257 * 120.00319 * 2 1 3 32 32 H 1.09000 * 109.46976 * 39.18721 * 4 3 2 33 33 H 1.08998 * 109.47602 * 159.18663 * 4 3 2 34 34 H 0.96998 * 120.00013 * 179.97438 * 8 7 5 35 35 H 0.96992 * 120.00471 * 247.15716 * 16 13 3 36 36 H 1.08992 * 109.47481 * 337.29946 * 17 16 13 37 37 H 1.08997 * 109.46932 * 299.99686 * 18 17 16 38 38 H 1.08995 * 109.46941 * 60.00042 * 18 17 16 39 39 H 1.08999 * 109.46953 * 300.00001 * 21 19 18 40 40 H 1.08997 * 109.46953 * 60.00630 * 21 19 18 41 41 H 1.09002 * 109.46800 * 179.97438 * 21 19 18 42 42 H 1.08995 * 109.47424 * 300.00049 * 22 19 18 43 43 H 1.08997 * 109.47021 * 179.97438 * 22 19 18 44 44 H 1.08999 * 109.47454 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47021 * 299.99693 * 25 23 22 46 46 H 1.09008 * 109.47216 * 59.99817 * 25 23 22 47 47 H 1.09008 * 109.47216 * 300.00045 * 26 17 16 48 48 H 1.08999 * 109.47454 * 59.99772 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4488 1.7104 -1.9325 6 1 4.0646 0.9358 -1.4997 7 6 3.8433 2.3348 -3.0967 8 7 3.1553 3.3548 -3.5616 9 14 5.3549 1.7320 -4.0140 10 1 4.9426 0.7772 -5.0740 11 1 6.0521 2.8879 -4.6328 12 1 6.2716 1.0516 -3.0642 13 16 2.4123 2.1201 1.4287 14 8 1.7181 1.4159 2.4494 15 8 2.2670 3.5168 1.2116 16 7 4.0254 1.8528 1.6904 17 6 5.0218 2.4627 0.8063 18 6 5.5551 3.7455 1.4473 19 6 6.5962 4.3822 0.5243 20 1 6.9764 5.2958 0.9811 21 6 5.9488 4.7153 -0.8215 22 6 7.7512 3.4028 0.3060 23 6 7.2178 2.1199 -0.3350 24 1 6.7566 2.3572 -1.2936 25 6 8.3727 1.1403 -0.5527 26 6 6.1769 1.4835 0.5875 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3205 1.8660 -1.9175 33 1 2.1669 3.1807 -1.0670 34 1 3.4331 3.7943 -4.3805 35 1 4.3107 1.2925 2.4289 36 1 4.5603 2.7001 -0.1521 37 1 4.7322 4.4431 1.6031 38 1 6.0167 3.5080 2.4057 39 1 5.5688 3.8013 -1.2780 40 1 5.1260 5.4131 -0.6660 41 1 6.6903 5.1693 -1.4789 42 1 8.2123 3.1653 1.2646 43 1 8.4925 3.8561 -0.3519 44 1 7.9927 0.2261 -1.0089 45 1 9.1146 1.5935 -1.2100 46 1 8.8335 0.9029 0.4063 47 1 6.6385 1.2460 1.5460 48 1 5.7970 0.5695 0.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337103267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:45 Heat of formation + Delta-G solvation = -112.210326 kcal Electronic energy + Delta-G solvation = -28310.158942 eV Core-core repulsion = 24718.391458 eV Total energy + Delta-G solvation = -3591.767485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.19419 -36.57491 -36.01531 -35.13437 -34.28627 -32.77839 -32.76047 -29.92824 -28.71509 -26.66366 -26.31611 -26.12699 -23.15517 -21.79010 -21.62334 -20.85369 -18.88674 -18.22823 -17.01473 -16.77051 -16.40941 -15.89129 -15.20067 -14.88548 -14.35020 -14.09973 -13.91156 -13.63368 -13.41226 -13.32355 -13.03560 -12.88274 -12.40325 -12.11323 -11.97863 -11.85340 -11.75404 -11.62538 -11.44312 -11.37409 -11.32137 -11.22331 -11.18927 -10.98211 -10.89023 -10.63445 -10.54995 -10.40354 -10.34833 -10.13828 -9.99625 -9.83959 -9.71314 -9.62104 -8.82503 -8.52588 -8.04314 -6.16165 -4.21467 1.38137 3.18851 3.28566 3.29189 3.61549 4.23137 4.30591 4.97544 5.03496 5.05777 5.15556 5.19426 5.42483 5.44980 5.47780 5.65009 5.69327 5.77692 5.79499 5.83358 5.89573 5.93485 5.99447 6.04048 6.09899 6.13852 6.18689 6.24813 6.34243 6.36453 6.39344 6.45093 6.60251 6.65891 6.67091 6.69615 6.74073 6.81019 6.92024 7.10857 7.33245 7.39864 7.52682 7.70965 7.82620 8.12590 8.83745 9.42847 10.90848 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.007769 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.393644 B = 3603.062689 C = 4797.318114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.993 5.993 4 C 0.241 3.759 5 C -0.540 4.540 6 H 0.066 0.934 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.262 1.262 13 S 2.783 3.217 14 O -1.005 7.005 15 O -0.979 6.979 16 N -1.124 6.124 17 C 0.139 3.861 18 C -0.128 4.128 19 C -0.087 4.087 20 H 0.064 0.936 21 C -0.158 4.158 22 C -0.107 4.107 23 C -0.098 4.098 24 H 0.084 0.916 25 C -0.144 4.144 26 C -0.108 4.108 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -3.515 6.854 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.119 3.881 5 C -0.580 4.580 6 H 0.084 0.916 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.700 3.300 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.791 3.209 14 O -0.989 6.989 15 O -0.963 6.963 16 N -0.881 5.881 17 C 0.032 3.968 18 C -0.168 4.168 19 C -0.106 4.106 20 H 0.083 0.917 21 C -0.215 4.215 22 C -0.145 4.145 23 C -0.117 4.117 24 H 0.103 0.897 25 C -0.201 4.201 26 C -0.147 4.147 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.857 -2.750 7.106 9.610 hybrid contribution 1.261 -0.809 -0.629 1.625 sum 7.117 -3.560 6.477 10.261 Atomic orbital electron populations 1.22201 0.97084 1.01311 1.02296 1.20945 0.93530 0.82989 1.02077 1.57725 1.78708 1.22857 1.24128 1.19234 0.97106 0.92583 0.79168 1.21548 1.06633 1.21020 1.08764 0.91626 1.24890 0.96730 0.94432 0.97170 1.69942 1.39672 1.20262 1.21920 0.86894 0.83520 0.78870 0.80669 1.20832 1.20966 1.18653 1.01797 0.72697 0.73746 0.72628 1.93533 1.72109 1.75376 1.57926 1.93576 1.85597 1.31272 1.85824 1.56078 1.25646 1.64994 1.41360 1.21216 0.89428 0.91236 0.94888 1.22058 0.98900 0.97734 0.98093 1.21057 0.95197 0.97550 0.96768 0.91735 1.22017 1.00190 1.03448 0.95868 1.21634 0.97288 0.95447 1.00097 1.21206 0.95512 0.94729 1.00278 0.89740 1.21801 0.98044 0.99342 1.00910 1.21749 0.95236 0.98754 0.98989 0.92418 0.92769 0.92114 0.90230 0.91957 0.94964 0.92606 0.92547 0.76601 0.85057 0.90924 0.92606 0.90182 0.92345 0.93635 0.92473 0.92350 0.92794 0.93084 0.93153 0.92643 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.15 0.38 -2.30 16 2 C 0.13 2.25 6.04 -4.05 -0.02 2.23 16 3 N -0.99 -19.90 2.84 -115.67 -0.33 -20.23 16 4 C 0.24 5.67 5.20 -5.20 -0.03 5.64 16 5 C -0.54 -12.91 7.03 -34.44 -0.24 -13.15 16 6 H 0.07 1.52 7.82 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 8 N -0.88 -23.53 13.29 55.43 0.74 -22.80 16 9 Si 0.87 19.20 28.83 -169.99 -4.90 14.30 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.26 -5.42 6.68 56.52 0.38 -5.04 16 13 S 2.78 55.14 6.02 -107.50 -0.65 54.49 16 14 O -1.01 -20.67 17.05 -57.17 -0.97 -21.64 16 15 O -0.98 -22.54 16.17 -57.17 -0.92 -23.47 16 16 N -1.12 -18.66 5.52 -4.89 -0.03 -18.69 16 17 C 0.14 2.38 2.38 -67.93 -0.16 2.22 16 18 C -0.13 -2.06 5.06 -26.73 -0.14 -2.19 16 19 C -0.09 -1.29 3.20 -90.61 -0.29 -1.58 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.16 -2.76 8.50 37.16 0.32 -2.45 16 22 C -0.11 -1.45 4.73 -26.73 -0.13 -1.57 16 23 C -0.10 -1.47 2.45 -90.64 -0.22 -1.70 16 24 H 0.08 1.50 5.23 -51.93 -0.27 1.22 16 25 C -0.14 -1.87 9.19 37.16 0.34 -1.52 16 26 C -0.11 -1.64 4.74 -26.76 -0.13 -1.77 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 30 H 0.08 1.35 8.11 -51.92 -0.42 0.92 16 31 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 32 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.06 1.47 6.87 -51.93 -0.36 1.11 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.40 5.52 8.86 -34.47 -0.31 5.22 16 36 H 0.13 2.68 3.38 -51.93 -0.18 2.51 16 37 H 0.07 1.29 7.90 -51.93 -0.41 0.88 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.60 4.81 -51.93 -0.25 1.35 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -28.37 375.71 -10.31 -38.68 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.49 Total: 10.14 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.41 Total: -16.44 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.38 Total: -61.72 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.90 Total: -45.11 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.90 Total: 14.30 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.65 Total: 54.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.37 -10.31 -38.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.530 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds