Wall clock time and date at job start Tue Mar 31 2020 12:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47526 * 2 1 4 4 C 1.46499 * 120.00487 * 275.00094 * 3 2 1 5 5 C 1.50697 * 109.47116 * 279.18953 * 4 3 2 6 6 H 1.08004 * 120.00157 * 4.44423 * 5 4 3 7 7 C 1.37877 * 119.99983 * 184.43890 * 5 4 3 8 8 N 1.31522 * 119.99986 * 5.86945 * 7 5 4 9 9 Si 1.86804 * 120.00224 * 185.87143 * 7 5 4 10 10 H 1.48495 * 109.47143 * 94.60196 * 9 7 5 11 11 H 1.48501 * 109.47036 * 214.60425 * 9 7 5 12 12 H 1.48502 * 109.46764 * 334.59919 * 9 7 5 13 13 S 1.65606 * 119.99888 * 94.99973 * 3 2 1 14 14 O 1.42106 * 106.39892 * 338.16898 * 13 3 2 15 15 O 1.42096 * 106.40454 * 205.24736 * 13 3 2 16 16 N 1.65597 * 107.21683 * 91.70402 * 13 3 2 17 17 C 1.46505 * 119.99700 * 67.16050 * 16 13 3 18 18 C 1.53003 * 109.46991 * 97.30187 * 17 16 13 19 19 C 1.53002 * 109.47138 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.47141 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.46863 * 59.99687 * 19 18 17 22 22 C 1.53000 * 109.47099 * 299.99978 * 19 18 17 23 23 C 1.53003 * 109.47107 * 60.00003 * 22 19 18 24 24 H 1.08997 * 109.47637 * 60.00013 * 23 22 19 25 25 C 1.53000 * 109.47107 * 180.02562 * 23 22 19 26 26 C 1.53000 * 109.47025 * 217.30030 * 17 16 13 27 27 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47236 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47023 * 59.99755 * 1 2 3 30 30 H 1.09009 * 109.46747 * 240.00367 * 2 1 3 31 31 H 1.08994 * 109.47257 * 120.00319 * 2 1 3 32 32 H 1.09000 * 109.46976 * 39.18721 * 4 3 2 33 33 H 1.08998 * 109.47602 * 159.18663 * 4 3 2 34 34 H 0.96998 * 120.00013 * 179.97438 * 8 7 5 35 35 H 0.96992 * 120.00471 * 247.15716 * 16 13 3 36 36 H 1.08992 * 109.47481 * 337.29946 * 17 16 13 37 37 H 1.08997 * 109.46932 * 299.99686 * 18 17 16 38 38 H 1.08995 * 109.46941 * 60.00042 * 18 17 16 39 39 H 1.08999 * 109.46953 * 300.00001 * 21 19 18 40 40 H 1.08997 * 109.46953 * 60.00630 * 21 19 18 41 41 H 1.09002 * 109.46800 * 179.97438 * 21 19 18 42 42 H 1.08995 * 109.47424 * 300.00049 * 22 19 18 43 43 H 1.08997 * 109.47021 * 179.97438 * 22 19 18 44 44 H 1.08999 * 109.47454 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47021 * 299.99693 * 25 23 22 46 46 H 1.09008 * 109.47216 * 59.99817 * 25 23 22 47 47 H 1.09008 * 109.47216 * 300.00045 * 26 17 16 48 48 H 1.08999 * 109.47454 * 59.99772 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4488 1.7104 -1.9325 6 1 4.0646 0.9358 -1.4997 7 6 3.8433 2.3348 -3.0967 8 7 3.1553 3.3548 -3.5616 9 14 5.3549 1.7320 -4.0140 10 1 4.9426 0.7772 -5.0740 11 1 6.0521 2.8879 -4.6328 12 1 6.2716 1.0516 -3.0642 13 16 2.4123 2.1201 1.4287 14 8 1.7181 1.4159 2.4494 15 8 2.2670 3.5168 1.2116 16 7 4.0254 1.8528 1.6904 17 6 5.0218 2.4627 0.8063 18 6 5.5551 3.7455 1.4473 19 6 6.5962 4.3822 0.5243 20 1 6.9764 5.2958 0.9811 21 6 5.9488 4.7153 -0.8215 22 6 7.7512 3.4028 0.3060 23 6 7.2178 2.1199 -0.3350 24 1 6.7566 2.3572 -1.2936 25 6 8.3727 1.1403 -0.5527 26 6 6.1769 1.4835 0.5875 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3205 1.8660 -1.9175 33 1 2.1669 3.1807 -1.0670 34 1 3.4331 3.7943 -4.3805 35 1 4.3107 1.2925 2.4289 36 1 4.5603 2.7001 -0.1521 37 1 4.7322 4.4431 1.6031 38 1 6.0167 3.5080 2.4057 39 1 5.5688 3.8013 -1.2780 40 1 5.1260 5.4131 -0.6660 41 1 6.6903 5.1693 -1.4789 42 1 8.2123 3.1653 1.2646 43 1 8.4925 3.8561 -0.3519 44 1 7.9927 0.2261 -1.0089 45 1 9.1146 1.5935 -1.2100 46 1 8.8335 0.9029 0.4063 47 1 6.6385 1.2460 1.5460 48 1 5.7970 0.5695 0.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337103267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:44 Heat of formation + Delta-G solvation = -130.411017 kcal Electronic energy + Delta-G solvation = -28310.948184 eV Core-core repulsion = 24718.391458 eV Total energy + Delta-G solvation = -3592.556726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42330 -38.25056 -37.64904 -36.84217 -35.61833 -34.63828 -33.95300 -31.49707 -30.01746 -28.45922 -27.61134 -27.21985 -24.89684 -23.28073 -22.98636 -22.04103 -20.38926 -19.55097 -18.59174 -18.47436 -18.17277 -17.38009 -16.79628 -16.32747 -15.80661 -15.51473 -15.35834 -14.88895 -14.74856 -14.66253 -14.53647 -14.37005 -13.79114 -13.64483 -13.54275 -13.32690 -13.19942 -13.12727 -13.00611 -12.92510 -12.73979 -12.66387 -12.57646 -12.44388 -12.33771 -12.26230 -12.06754 -11.82488 -11.73347 -11.61564 -11.51438 -11.18469 -11.04162 -10.89224 -10.50803 -10.16361 -9.73182 -8.10723 -6.20804 -0.22320 1.41960 1.46416 1.54445 2.06107 2.45687 2.66697 3.21220 3.49533 3.80380 3.88154 3.93117 4.04007 4.24511 4.27930 4.42165 4.43447 4.45801 4.53256 4.57288 4.70741 4.74180 4.79749 4.88167 4.90335 4.92842 4.99707 5.02172 5.06916 5.09908 5.16919 5.22585 5.27968 5.30256 5.40497 5.42852 5.45363 5.51188 5.56681 5.58793 5.64167 5.76174 5.82494 5.96305 6.17952 6.35424 6.89474 7.47009 8.96975 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.007769 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.393644 B = 3603.062689 C = 4797.318114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.030 3.970 8 N -0.921 5.921 9 Si 0.925 3.075 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.240 1.240 13 S 2.795 3.205 14 O -1.011 7.011 15 O -1.017 7.017 16 N -1.109 6.109 17 C 0.134 3.866 18 C -0.128 4.128 19 C -0.083 4.083 20 H 0.085 0.915 21 C -0.156 4.156 22 C -0.100 4.100 23 C -0.103 4.103 24 H 0.051 0.949 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.014 0.986 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -5.370 8.394 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.170 4.170 8 N -0.560 5.560 9 Si 0.751 3.249 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.163 1.163 13 S 2.803 3.197 14 O -0.995 6.995 15 O -1.000 7.000 16 N -0.870 5.870 17 C 0.027 3.973 18 C -0.167 4.167 19 C -0.102 4.102 20 H 0.103 0.897 21 C -0.214 4.214 22 C -0.138 4.138 23 C -0.122 4.122 24 H 0.070 0.930 25 C -0.197 4.197 26 C -0.142 4.142 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.487 -4.645 8.679 12.997 hybrid contribution 0.380 -0.225 -1.062 1.150 sum 8.867 -4.870 7.617 12.663 Atomic orbital electron populations 1.22193 0.96115 1.03190 1.01201 1.21230 0.94483 0.81389 1.03271 1.57630 1.79386 1.23959 1.22752 1.18781 0.96552 0.90993 0.80233 1.21680 1.06330 1.20384 1.08249 0.90709 1.25526 0.99074 0.94394 0.98048 1.70072 1.41626 1.21847 1.22450 0.86058 0.81085 0.78142 0.79646 1.21213 1.21565 1.16262 1.01261 0.73353 0.72819 0.72260 1.93516 1.72862 1.75214 1.57889 1.93533 1.86437 1.33798 1.86256 1.55694 1.24243 1.65180 1.41891 1.21204 0.89855 0.92694 0.93507 1.22049 0.98545 0.96513 0.99619 1.21070 0.95367 0.99008 0.94759 0.89682 1.21978 0.99862 1.01582 0.97939 1.21605 0.96525 0.94052 1.01574 1.21224 0.96088 0.96160 0.98756 0.93046 1.21769 0.97293 0.98321 1.02330 1.21723 0.94435 0.97490 1.00517 0.89064 0.93705 0.93354 0.89899 0.89784 0.96771 0.96196 0.92862 0.74529 0.88566 0.93659 0.89722 0.92840 0.94776 0.92504 0.89794 0.91261 0.93568 0.92385 0.90852 0.89625 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 10.24 71.98 0.74 -4.43 16 2 C 0.12 4.06 6.04 86.38 0.52 4.59 16 3 N -1.00 -40.45 2.84 -519.87 -1.47 -41.92 16 4 C 0.26 12.65 5.20 85.63 0.45 13.09 16 5 C -0.53 -25.71 7.03 25.60 0.18 -25.53 16 6 H 0.07 3.45 7.82 -2.91 -0.02 3.43 16 7 C 0.03 1.54 5.45 84.65 0.46 2.00 16 8 N -0.92 -51.35 13.29 21.45 0.29 -51.07 16 9 Si 0.93 39.77 28.83 68.60 1.98 41.75 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.24 -9.32 6.68 99.48 0.66 -8.65 16 13 S 2.79 111.25 6.02 -56.49 -0.34 110.91 16 14 O -1.01 -40.67 17.05 -128.00 -2.18 -42.85 16 15 O -1.02 -48.68 16.17 -128.00 -2.07 -50.75 16 16 N -1.11 -35.43 5.52 -169.38 -0.93 -36.36 16 17 C 0.13 4.46 2.38 44.99 0.11 4.57 16 18 C -0.13 -3.92 5.06 30.60 0.15 -3.76 16 19 C -0.08 -2.33 3.20 -10.79 -0.03 -2.36 16 20 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 21 C -0.16 -5.56 8.50 71.98 0.61 -4.95 16 22 C -0.10 -2.34 4.73 30.60 0.14 -2.20 16 23 C -0.10 -2.80 2.45 -10.81 -0.03 -2.83 16 24 H 0.05 1.75 5.23 -2.39 -0.01 1.74 16 25 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 26 C -0.10 -2.82 4.74 30.58 0.14 -2.68 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 30 H 0.08 2.71 8.11 -2.38 -0.02 2.69 16 31 H 0.08 2.44 7.56 -2.39 -0.02 2.42 16 32 H 0.01 0.74 8.10 -2.39 -0.02 0.72 16 33 H 0.02 1.12 6.87 -2.39 -0.02 1.11 16 34 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.42 10.43 8.86 -96.75 -0.86 9.57 16 36 H 0.10 4.00 3.38 -2.39 -0.01 3.99 16 37 H 0.04 1.62 7.90 -2.39 -0.02 1.60 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.20 4.81 -2.39 -0.01 2.19 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -63.71 375.71 -0.60 -64.31 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.03 Total: 32.91 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.11 Total: -26.92 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -2.12 Total: -129.35 kcal Atomic # 8 Polarization: -89.35 SS G_CDS: -4.25 Total: -93.60 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.98 Total: 41.75 kcal Atomic # 16 Polarization: 111.25 SS G_CDS: -0.34 Total: 110.91 kcal Total: -63.71 -0.60 -64.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.101 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds