Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47204 * 2 1 4 4 C 1.46504 * 120.00236 * 275.00204 * 3 2 1 5 5 C 1.50691 * 109.47026 * 274.99752 * 4 3 2 6 6 H 1.08002 * 120.00495 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00309 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99568 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00442 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 60.00119 * 9 7 5 11 11 H 1.48499 * 109.47264 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46855 * 300.00077 * 9 7 5 13 13 S 1.65594 * 119.99987 * 94.99538 * 3 2 1 14 14 O 1.42104 * 106.40584 * 156.46271 * 13 3 2 15 15 O 1.42104 * 106.40263 * 23.54735 * 13 3 2 16 16 N 1.65603 * 107.22400 * 270.00808 * 13 3 2 17 17 C 1.47419 * 125.65136 * 90.01738 * 16 13 3 18 18 C 1.54905 * 104.92834 * 155.80118 * 17 16 13 19 19 C 1.55448 * 101.45165 * 37.00468 * 18 17 16 20 20 H 1.08998 * 110.85957 * 82.96191 * 19 18 17 21 21 C 1.53001 * 110.70895 * 206.14261 * 19 18 17 22 22 C 1.52997 * 109.47631 * 288.54993 * 21 19 18 23 23 C 1.53002 * 109.47392 * 174.99845 * 22 21 19 24 24 C 1.52994 * 109.47018 * 295.00257 * 22 21 19 25 25 C 1.47026 * 125.64288 * 270.00187 * 16 13 3 26 26 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47229 * 299.99842 * 1 2 3 28 28 H 1.09009 * 109.47189 * 60.00281 * 1 2 3 29 29 H 1.09007 * 109.47458 * 240.00229 * 2 1 3 30 30 H 1.08994 * 109.47370 * 120.00154 * 2 1 3 31 31 H 1.09000 * 109.46900 * 34.99796 * 4 3 2 32 32 H 1.08993 * 109.46904 * 154.99253 * 4 3 2 33 33 H 0.97005 * 119.99538 * 179.97438 * 8 7 5 34 34 H 1.09002 * 110.36926 * 274.69587 * 17 16 13 35 35 H 1.08995 * 110.36556 * 36.90871 * 17 16 13 36 36 H 1.09002 * 111.00852 * 155.13877 * 18 17 16 37 37 H 1.09004 * 111.00578 * 278.99532 * 18 17 16 38 38 H 1.09002 * 109.46937 * 48.55046 * 21 19 18 39 39 H 1.09001 * 109.47052 * 168.54227 * 21 19 18 40 40 H 1.09007 * 109.46817 * 54.99576 * 22 21 19 41 41 H 1.08997 * 109.46874 * 60.00244 * 23 22 21 42 42 H 1.08997 * 109.46869 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47003 * 299.99949 * 23 22 21 44 44 H 1.08998 * 109.47251 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.47275 * 299.99488 * 24 22 21 46 46 H 1.09000 * 109.47753 * 59.99635 * 24 22 21 47 47 H 1.08998 * 109.88266 * 300.48868 * 25 16 13 48 48 H 1.08997 * 109.88244 * 61.50225 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1724 1.1119 -1.3836 7 6 3.8525 2.3607 -3.0848 8 7 3.0275 3.1857 -3.6919 9 14 5.5095 1.9649 -3.8510 10 1 5.6004 0.5049 -4.1069 11 1 5.6513 2.7022 -5.1322 12 1 6.5943 2.3732 -2.9227 13 16 2.4121 2.1202 1.4286 14 8 3.3283 3.1571 1.1050 15 8 2.7095 1.0799 2.3499 16 7 1.0430 2.8641 1.9895 17 6 0.0363 2.2547 2.8775 18 6 -0.6465 3.4507 3.5867 19 6 -0.6866 4.5047 2.4448 20 1 -1.5463 4.3405 1.7952 21 6 -0.7070 5.9231 3.0182 22 6 -2.0705 6.1957 3.6565 23 6 -2.0499 7.5652 4.3384 24 6 -3.1522 6.1808 2.5746 25 6 0.6304 4.2420 1.6846 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0755 33 1 3.2794 3.5883 -4.5377 34 1 -0.6932 1.6926 2.2945 35 1 0.5185 1.6054 3.6082 36 1 -1.6524 3.1882 3.9144 37 1 -0.0443 3.8042 4.4238 38 1 0.0735 6.0212 3.7727 39 1 -0.5305 6.6412 2.2174 40 1 -2.2860 5.4246 4.3963 41 1 -1.8344 8.3361 3.5986 42 1 -3.0211 7.7591 4.7935 43 1 -1.2792 7.5757 5.1092 44 1 -4.1236 6.3746 3.0294 45 1 -2.9368 6.9518 1.8348 46 1 -3.1670 5.2052 2.0888 47 1 1.3970 4.9411 2.0186 48 1 0.4703 4.3522 0.6121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337103878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = -98.846922 kcal Electronic energy + Delta-G solvation = -26607.485661 eV Core-core repulsion = 23016.297657 eV Total energy + Delta-G solvation = -3591.188004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.99167 -36.62070 -36.09253 -35.98912 -35.12400 -32.65286 -31.21667 -29.99235 -29.31391 -27.36929 -26.58020 -25.75773 -23.11184 -22.29335 -21.68524 -20.91404 -19.71116 -18.34102 -17.40453 -16.82960 -16.24919 -16.12596 -15.45701 -15.06736 -14.50268 -14.36203 -13.98220 -13.93120 -13.54478 -13.32951 -13.25855 -12.97271 -12.70401 -12.63966 -12.40745 -12.12679 -12.05337 -11.86114 -11.67279 -11.60034 -11.50636 -11.32774 -11.21417 -11.18573 -10.98118 -10.96070 -10.89134 -10.55312 -10.51786 -10.44236 -10.42881 -10.31862 -9.96821 -9.75013 -8.74126 -8.41456 -8.04670 -6.04604 -4.08343 1.20933 3.34953 3.38286 3.43045 3.54285 4.13702 4.34650 4.46474 4.59795 4.61430 4.77263 4.86369 5.03081 5.12288 5.29947 5.31353 5.34988 5.42618 5.43731 5.45704 5.54297 5.62582 5.65020 5.71893 5.72451 5.75493 5.77207 5.79546 5.89667 5.95390 5.99400 6.04804 6.07027 6.12173 6.25108 6.28584 6.33791 6.41502 6.57892 6.62121 6.74987 7.26525 7.44241 7.65771 7.93143 8.23098 8.93627 9.56612 11.03926 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003882 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.078347 B = 7211.039270 C = 7895.361233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.791 3.209 14 O -0.960 6.960 15 O -0.995 6.995 16 N -1.022 6.022 17 C 0.115 3.885 18 C -0.123 4.123 19 C -0.098 4.098 20 H 0.087 0.913 21 C -0.107 4.107 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.150 4.150 25 C 0.125 3.875 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 2.823 13.906 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.832 5.832 4 C 0.138 3.862 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.801 3.199 14 O -0.944 6.944 15 O -0.980 6.980 16 N -0.861 5.861 17 C -0.010 4.010 18 C -0.162 4.162 19 C -0.118 4.118 20 H 0.105 0.895 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.205 4.205 24 C -0.207 4.207 25 C -0.001 4.001 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.868 2.902 14.105 19.312 hybrid contribution 0.502 -0.152 -0.851 1.000 sum -12.366 2.750 13.254 18.335 Atomic orbital electron populations 1.22295 0.97325 1.01353 1.02080 1.21130 0.93065 0.83308 1.03423 1.57815 1.80843 1.21315 1.23244 1.18995 0.97267 0.91011 0.78949 1.21461 1.02103 1.27723 1.05524 0.92279 1.24921 0.97348 0.94826 0.96855 1.69914 1.36132 1.30239 1.17236 0.86584 0.84257 0.78404 0.78373 1.20189 1.21171 1.19999 1.01645 0.72655 0.72916 0.72651 1.93620 1.58925 1.57796 1.84072 1.93506 1.83188 1.57680 1.63599 1.59366 1.41648 1.22664 1.62404 1.21984 0.90792 0.95856 0.92408 1.22883 1.00645 0.95024 0.97613 1.22372 0.97680 0.94914 0.96787 0.89515 1.21672 0.96896 0.95655 1.00312 1.21105 0.95209 0.97562 0.97558 1.21846 1.01380 0.96919 1.00377 1.21907 0.98006 1.02148 0.98672 1.21711 0.96021 0.82537 0.99788 0.92279 0.93249 0.91996 0.89766 0.90711 0.94791 0.94674 0.92681 0.91836 0.90470 0.90397 0.90722 0.91573 0.91399 0.91166 0.92684 0.92956 0.92792 0.93096 0.92637 0.92281 0.91379 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.12 2.09 6.40 -4.04 -0.03 2.06 16 3 N -0.99 -21.04 2.82 -115.67 -0.33 -21.36 16 4 C 0.26 6.56 5.10 -5.20 -0.03 6.54 16 5 C -0.53 -15.02 9.38 -34.45 -0.32 -15.34 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.79 58.07 6.31 -107.50 -0.68 57.39 16 14 O -0.96 -23.85 16.69 -57.17 -0.95 -24.81 16 15 O -1.00 -21.44 16.01 -57.17 -0.92 -22.36 16 16 N -1.02 -16.38 3.76 -111.43 -0.42 -16.80 16 17 C 0.12 1.43 6.92 -2.53 -0.02 1.42 16 18 C -0.12 -1.19 5.89 -24.43 -0.14 -1.34 16 19 C -0.10 -1.02 2.81 -88.63 -0.25 -1.27 16 20 H 0.09 0.85 6.31 -51.93 -0.33 0.53 16 21 C -0.11 -0.98 4.04 -26.73 -0.11 -1.09 16 22 C -0.10 -0.74 2.87 -90.62 -0.26 -1.00 16 23 C -0.15 -1.07 9.19 37.16 0.34 -0.72 16 24 C -0.15 -1.14 8.97 37.15 0.33 -0.81 16 25 C 0.13 1.80 6.59 -3.06 -0.02 1.78 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.65 6.00 -51.93 -0.31 0.34 16 28 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 30 H 0.07 1.27 6.91 -51.93 -0.36 0.92 16 31 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 0.71 6.22 -51.93 -0.32 0.39 16 35 H 0.08 0.97 7.78 -51.93 -0.40 0.57 16 36 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.07 0.72 7.95 -51.93 -0.41 0.30 16 38 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.52 7.52 -51.93 -0.39 0.13 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 47 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -33.10 385.86 -10.67 -43.77 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.69 Total: -3.02 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.22 Total: -10.16 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.01 Total: -63.65 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.87 Total: -47.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.68 Total: 57.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.10 -10.67 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.079 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds