Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47204 * 2 1 4 4 C 1.46504 * 120.00236 * 275.00204 * 3 2 1 5 5 C 1.50691 * 109.47026 * 274.99752 * 4 3 2 6 6 H 1.08002 * 120.00495 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00309 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99568 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00442 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 60.00119 * 9 7 5 11 11 H 1.48499 * 109.47264 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46855 * 300.00077 * 9 7 5 13 13 S 1.65594 * 119.99987 * 94.99538 * 3 2 1 14 14 O 1.42104 * 106.40584 * 156.46271 * 13 3 2 15 15 O 1.42104 * 106.40263 * 23.54735 * 13 3 2 16 16 N 1.65603 * 107.22400 * 270.00808 * 13 3 2 17 17 C 1.47419 * 125.65136 * 90.01738 * 16 13 3 18 18 C 1.54905 * 104.92834 * 155.80118 * 17 16 13 19 19 C 1.55448 * 101.45165 * 37.00468 * 18 17 16 20 20 H 1.08998 * 110.85957 * 82.96191 * 19 18 17 21 21 C 1.53001 * 110.70895 * 206.14261 * 19 18 17 22 22 C 1.52997 * 109.47631 * 288.54993 * 21 19 18 23 23 C 1.53002 * 109.47392 * 174.99845 * 22 21 19 24 24 C 1.52994 * 109.47018 * 295.00257 * 22 21 19 25 25 C 1.47026 * 125.64288 * 270.00187 * 16 13 3 26 26 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47229 * 299.99842 * 1 2 3 28 28 H 1.09009 * 109.47189 * 60.00281 * 1 2 3 29 29 H 1.09007 * 109.47458 * 240.00229 * 2 1 3 30 30 H 1.08994 * 109.47370 * 120.00154 * 2 1 3 31 31 H 1.09000 * 109.46900 * 34.99796 * 4 3 2 32 32 H 1.08993 * 109.46904 * 154.99253 * 4 3 2 33 33 H 0.97005 * 119.99538 * 179.97438 * 8 7 5 34 34 H 1.09002 * 110.36926 * 274.69587 * 17 16 13 35 35 H 1.08995 * 110.36556 * 36.90871 * 17 16 13 36 36 H 1.09002 * 111.00852 * 155.13877 * 18 17 16 37 37 H 1.09004 * 111.00578 * 278.99532 * 18 17 16 38 38 H 1.09002 * 109.46937 * 48.55046 * 21 19 18 39 39 H 1.09001 * 109.47052 * 168.54227 * 21 19 18 40 40 H 1.09007 * 109.46817 * 54.99576 * 22 21 19 41 41 H 1.08997 * 109.46874 * 60.00244 * 23 22 21 42 42 H 1.08997 * 109.46869 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47003 * 299.99949 * 23 22 21 44 44 H 1.08998 * 109.47251 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.47275 * 299.99488 * 24 22 21 46 46 H 1.09000 * 109.47753 * 59.99635 * 24 22 21 47 47 H 1.08998 * 109.88266 * 300.48868 * 25 16 13 48 48 H 1.08997 * 109.88244 * 61.50225 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1724 1.1119 -1.3836 7 6 3.8525 2.3607 -3.0848 8 7 3.0275 3.1857 -3.6919 9 14 5.5095 1.9649 -3.8510 10 1 5.6004 0.5049 -4.1069 11 1 5.6513 2.7022 -5.1322 12 1 6.5943 2.3732 -2.9227 13 16 2.4121 2.1202 1.4286 14 8 3.3283 3.1571 1.1050 15 8 2.7095 1.0799 2.3499 16 7 1.0430 2.8641 1.9895 17 6 0.0363 2.2547 2.8775 18 6 -0.6465 3.4507 3.5867 19 6 -0.6866 4.5047 2.4448 20 1 -1.5463 4.3405 1.7952 21 6 -0.7070 5.9231 3.0182 22 6 -2.0705 6.1957 3.6565 23 6 -2.0499 7.5652 4.3384 24 6 -3.1522 6.1808 2.5746 25 6 0.6304 4.2420 1.6846 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0755 33 1 3.2794 3.5883 -4.5377 34 1 -0.6932 1.6926 2.2945 35 1 0.5185 1.6054 3.6082 36 1 -1.6524 3.1882 3.9144 37 1 -0.0443 3.8042 4.4238 38 1 0.0735 6.0212 3.7727 39 1 -0.5305 6.6412 2.2174 40 1 -2.2860 5.4246 4.3963 41 1 -1.8344 8.3361 3.5986 42 1 -3.0211 7.7591 4.7935 43 1 -1.2792 7.5757 5.1092 44 1 -4.1236 6.3746 3.0294 45 1 -2.9368 6.9518 1.8348 46 1 -3.1670 5.2052 2.0888 47 1 1.3970 4.9411 2.0186 48 1 0.4703 4.3522 0.6121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337103878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = -120.080697 kcal Electronic energy + Delta-G solvation = -26608.406427 eV Core-core repulsion = 23016.297657 eV Total energy + Delta-G solvation = -3592.108769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.94936 -38.36859 -37.70057 -36.90998 -36.87113 -34.74121 -32.18596 -31.57359 -30.31651 -28.52615 -27.93554 -26.66548 -24.97514 -23.44782 -23.15922 -21.77080 -20.47975 -19.82503 -19.04600 -18.44166 -18.28070 -17.40105 -16.92092 -16.40293 -15.83684 -15.57449 -15.19963 -14.92826 -14.79677 -14.65199 -14.55583 -14.17717 -13.88079 -13.73404 -13.66240 -13.60548 -13.39434 -13.22226 -13.09276 -13.01015 -12.82227 -12.77066 -12.69588 -12.52682 -12.30066 -12.23588 -12.15822 -11.96512 -11.79459 -11.73721 -11.60807 -11.31240 -11.21909 -11.16778 -10.61747 -10.00605 -9.81621 -8.22321 -6.34468 -0.41584 1.36964 1.40850 1.47934 2.00830 2.38101 2.56384 3.08140 3.20359 3.59993 3.75043 3.81526 3.96444 4.16220 4.20009 4.32058 4.39392 4.41613 4.45553 4.52204 4.57691 4.61490 4.72552 4.82286 4.87915 4.90123 4.96535 4.98864 5.03897 5.05627 5.11309 5.13421 5.14414 5.18369 5.21704 5.24080 5.34707 5.40511 5.44084 5.46935 5.55010 5.61534 5.64863 5.69497 5.96320 6.09155 6.73094 7.34218 8.85059 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003882 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.078347 B = 7211.039270 C = 7895.361233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.997 5.997 4 C 0.279 3.721 5 C -0.553 4.553 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.956 3.044 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.278 1.278 13 S 2.803 3.197 14 O -1.010 7.010 15 O -1.005 7.005 16 N -1.018 6.018 17 C 0.103 3.897 18 C -0.112 4.112 19 C -0.086 4.086 20 H 0.098 0.902 21 C -0.106 4.106 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.151 4.151 25 C 0.116 3.884 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.011 0.989 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 2.184 15.069 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.838 5.838 4 C 0.155 3.845 5 C -0.592 4.592 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.204 1.204 13 S 2.814 3.186 14 O -0.994 6.994 15 O -0.990 6.990 16 N -0.860 5.860 17 C -0.021 4.021 18 C -0.151 4.151 19 C -0.106 4.106 20 H 0.116 0.884 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.205 4.205 24 C -0.208 4.208 25 C -0.009 4.009 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.590 2.229 15.277 21.242 hybrid contribution 0.993 0.055 -1.154 1.524 sum -13.597 2.285 14.122 19.737 Atomic orbital electron populations 1.22216 0.94301 1.03425 1.02172 1.21387 0.95652 0.81389 1.03326 1.57723 1.81508 1.22673 1.21917 1.18501 0.95742 0.89986 0.80247 1.21804 1.03353 1.27886 1.06150 0.93204 1.25738 1.00901 0.94629 0.97332 1.70004 1.37747 1.30801 1.17635 0.85649 0.79625 0.79004 0.77695 1.18766 1.19883 1.20405 1.00955 0.73080 0.72199 0.72393 1.93548 1.61775 1.59302 1.84778 1.93478 1.83920 1.58031 1.63532 1.58966 1.41317 1.23298 1.62445 1.22375 0.90280 0.97194 0.92259 1.22913 1.02221 0.93054 0.96872 1.22346 0.95355 0.96050 0.96850 0.88391 1.21663 0.98067 0.94549 1.00097 1.21073 0.93993 0.98161 0.97675 1.21845 1.01940 0.96493 1.00264 1.21914 0.98415 1.01933 0.98522 1.21914 0.98062 0.81361 0.99580 0.89179 0.91885 0.93137 0.90801 0.89863 0.95480 0.97118 0.92320 0.90056 0.90437 0.86979 0.90362 0.91736 0.92181 0.90042 0.93208 0.92046 0.92717 0.92164 0.93364 0.92242 0.92508 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 10.24 71.98 0.74 -3.64 16 2 C 0.11 3.81 6.40 86.38 0.55 4.36 16 3 N -1.00 -43.27 2.82 -519.86 -1.47 -44.74 16 4 C 0.28 14.61 5.10 85.63 0.44 15.05 16 5 C -0.55 -32.26 9.38 25.60 0.24 -32.02 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.79 5.46 84.65 0.46 1.26 16 8 N -0.92 -54.86 13.29 21.45 0.28 -54.58 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 S 2.80 119.12 6.31 -56.49 -0.36 118.76 16 14 O -1.01 -52.45 16.69 -128.00 -2.14 -54.58 16 15 O -1.01 -43.35 16.01 -128.00 -2.05 -45.40 16 16 N -1.02 -32.43 3.76 -506.45 -1.90 -34.33 16 17 C 0.10 2.33 6.92 86.85 0.60 2.94 16 18 C -0.11 -1.82 5.89 32.09 0.19 -1.63 16 19 C -0.09 -1.64 2.81 -9.50 -0.03 -1.67 16 20 H 0.10 1.69 6.31 -2.39 -0.02 1.68 16 21 C -0.11 -1.78 4.04 30.59 0.12 -1.65 16 22 C -0.09 -1.17 2.87 -10.80 -0.03 -1.20 16 23 C -0.15 -1.84 9.19 71.98 0.66 -1.18 16 24 C -0.15 -1.94 8.97 71.98 0.65 -1.29 16 25 C 0.12 3.38 6.59 86.73 0.57 3.95 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.51 6.00 -2.39 -0.01 1.49 16 28 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.07 2.72 8.11 -2.38 -0.02 2.71 16 30 H 0.08 2.78 6.91 -2.39 -0.02 2.76 16 31 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 32 H 0.01 0.61 7.61 -2.39 -0.02 0.60 16 33 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 34 H 0.08 1.57 6.22 -2.39 -0.01 1.55 16 35 H 0.08 1.77 7.78 -2.39 -0.02 1.76 16 36 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.08 1.26 7.95 -2.38 -0.02 1.24 16 38 H 0.06 1.11 8.00 -2.39 -0.02 1.09 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 0.91 7.52 -2.38 -0.02 0.89 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.06 0.76 6.43 -2.39 -0.02 0.74 16 47 H 0.06 1.75 7.82 -2.39 -0.02 1.73 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.93 385.86 0.47 -72.46 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.91 Total: 11.66 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.16 Total: -16.74 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -3.09 Total: -133.65 kcal Atomic # 8 Polarization: -95.80 SS G_CDS: -4.19 Total: -99.98 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 119.12 SS G_CDS: -0.36 Total: 118.76 kcal Total: -72.93 0.47 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337103878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.622 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds