Wall clock time and date at job start Tue Mar 31 2020 12:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47020 * 2 1 4 4 C 1.46504 * 119.99893 * 274.99722 * 3 2 1 5 5 C 1.50699 * 109.47018 * 274.99922 * 4 3 2 6 6 H 1.07997 * 119.99982 * 0.02562 * 5 4 3 7 7 C 1.37869 * 119.99917 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00316 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47134 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47224 * 120.00037 * 9 7 5 12 12 H 1.48505 * 109.47392 * 240.00205 * 9 7 5 13 13 S 1.65606 * 120.00115 * 94.99872 * 3 2 1 14 14 O 1.42100 * 106.39948 * 336.45757 * 13 3 2 15 15 O 1.42103 * 106.39949 * 203.53870 * 13 3 2 16 16 N 1.65597 * 107.21744 * 89.99861 * 13 3 2 17 17 C 1.46506 * 120.00079 * 65.00334 * 16 13 3 18 18 H 1.09005 * 108.84870 * 333.28211 * 17 16 13 19 19 C 1.50473 * 108.87633 * 91.74553 * 17 16 13 20 20 C 1.54243 * 108.51997 * 214.92742 * 19 17 16 21 21 C 1.45542 * 112.40389 * 280.01579 * 20 19 17 22 22 C 1.54242 * 112.40653 * 61.94047 * 21 20 19 23 23 H 1.09001 * 109.79173 * 39.81139 * 22 21 20 24 24 C 1.53006 * 109.62692 * 160.29815 * 22 21 20 25 25 C 1.50470 * 108.51675 * 280.00510 * 22 21 20 26 26 C 1.54064 * 108.87559 * 214.72477 * 17 16 13 27 27 H 1.08994 * 109.47230 * 60.00430 * 1 2 3 28 28 H 1.09006 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47565 * 299.99942 * 1 2 3 30 30 H 1.09001 * 109.47375 * 239.99815 * 2 1 3 31 31 H 1.09007 * 109.47002 * 119.99627 * 2 1 3 32 32 H 1.08994 * 109.46631 * 34.99936 * 4 3 2 33 33 H 1.08997 * 109.46612 * 155.00125 * 4 3 2 34 34 H 0.97001 * 120.00791 * 179.97438 * 8 7 5 35 35 H 0.97005 * 120.00050 * 244.72355 * 16 13 3 36 36 H 1.08992 * 109.62907 * 334.63729 * 19 17 16 37 37 H 1.08996 * 109.62611 * 95.21973 * 19 17 16 38 38 H 1.08999 * 108.89381 * 159.26713 * 20 19 17 39 39 H 1.08993 * 108.89968 * 40.77433 * 20 19 17 40 40 H 1.09008 * 108.89700 * 301.18501 * 21 20 19 41 41 H 1.09000 * 108.89378 * 182.69293 * 21 20 19 42 42 H 1.08999 * 109.46924 * 179.02337 * 24 22 21 43 43 H 1.08997 * 109.47304 * 299.02451 * 24 22 21 44 44 H 1.09001 * 109.46916 * 59.02853 * 24 22 21 45 45 H 1.08994 * 108.87693 * 333.37491 * 25 22 21 46 46 H 1.08998 * 108.87794 * 214.93214 * 25 22 21 47 47 H 1.09002 * 108.81461 * 318.35879 * 26 17 16 48 48 H 1.08994 * 108.81540 * 76.75117 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8525 2.3605 -3.0848 8 7 3.0277 3.1853 -3.6920 9 14 5.5090 1.9635 -3.8516 10 1 6.2450 1.0156 -2.9770 11 1 5.3014 1.3457 -5.1860 12 1 6.2972 3.2131 -4.0019 13 16 2.4121 2.1202 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3056 3.5186 1.1997 16 7 4.0143 1.8137 1.7138 17 6 5.0351 2.3525 0.8115 18 1 4.5945 2.4912 -0.1759 19 6 5.4885 3.6894 1.3323 20 6 5.7987 4.6041 0.1297 21 6 7.1064 4.3347 -0.4494 22 6 7.2197 2.8998 -1.0037 23 1 6.2892 2.6206 -1.4981 24 6 8.3754 2.8247 -2.0035 25 6 7.4828 1.9634 0.1443 26 6 6.1903 1.3389 0.7039 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.3618 1.8096 -1.9453 33 1 2.0921 3.1802 -1.0756 34 1 3.2794 3.5879 -4.5379 35 1 4.2772 1.2808 2.4805 36 1 4.6980 4.1343 1.9364 37 1 6.3868 3.5615 1.9362 38 1 5.7655 5.6428 0.4585 39 1 5.0363 4.4532 -0.6345 40 1 7.8683 4.4782 0.3169 41 1 7.2860 5.0413 -1.2597 42 1 8.4641 1.8059 -2.3805 43 1 8.1822 3.5039 -2.8339 44 1 9.3033 3.1110 -1.5083 45 1 7.9821 2.5143 0.9414 46 1 8.1418 1.1646 -0.1960 47 1 6.3960 0.9339 1.6947 48 1 5.8831 0.5240 0.0485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337159973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:20 Heat of formation + Delta-G solvation = -121.465877 kcal Electronic energy + Delta-G solvation = -28406.415567 eV Core-core repulsion = 24814.246731 eV Total energy + Delta-G solvation = -3592.168835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30894 -38.23856 -37.66642 -36.82903 -36.23199 -34.68088 -33.58184 -31.62233 -31.52836 -28.52171 -28.03226 -25.23116 -24.92684 -23.86841 -23.29682 -21.43631 -20.33925 -20.25075 -18.69861 -18.54457 -18.09811 -17.30802 -16.79443 -16.32902 -16.02222 -15.57271 -15.38122 -15.22178 -14.85025 -14.62033 -14.53534 -14.22833 -13.83141 -13.66280 -13.61425 -13.43869 -13.31141 -13.23635 -13.11996 -12.99890 -12.94004 -12.62586 -12.57812 -12.34300 -12.23246 -12.11459 -11.87831 -11.71702 -11.54863 -11.46520 -11.32805 -11.22733 -11.07792 -10.89759 -10.53395 -10.27425 -9.76009 -8.15020 -6.25718 -0.21413 1.40109 1.43757 1.53164 2.05920 2.42455 2.67413 3.16599 3.50822 3.73585 3.82119 3.98535 4.03797 4.22099 4.28985 4.32774 4.37899 4.44852 4.52188 4.55357 4.60579 4.71228 4.78087 4.84382 4.92541 4.93717 4.99515 5.05192 5.11904 5.16008 5.18643 5.28173 5.29678 5.31532 5.41648 5.42810 5.45406 5.49210 5.55998 5.57177 5.69352 5.72372 5.80449 5.94627 6.13396 6.36649 6.84736 7.42175 8.92686 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.007501 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.451909 B = 3732.077870 C = 4895.270593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.258 3.742 5 C -0.530 4.530 6 H 0.081 0.919 7 C 0.024 3.976 8 N -0.924 5.924 9 Si 0.927 3.073 10 H -0.239 1.239 11 H -0.301 1.301 12 H -0.271 1.271 13 S 2.795 3.205 14 O -1.012 7.012 15 O -1.015 7.015 16 N -1.112 6.112 17 C 0.122 3.878 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.117 4.117 23 H 0.055 0.945 24 C -0.149 4.149 25 C -0.103 4.103 26 C -0.112 4.112 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.419 0.581 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 -4.888 8.445 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.838 5.838 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.099 0.901 7 C -0.176 4.176 8 N -0.564 5.564 9 Si 0.753 3.247 10 H -0.162 1.162 11 H -0.229 1.229 12 H -0.196 1.196 13 S 2.803 3.197 14 O -0.996 6.996 15 O -0.998 6.998 16 N -0.873 5.873 17 C 0.016 3.984 18 H 0.121 0.879 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.140 4.140 22 C -0.135 4.135 23 H 0.073 0.927 24 C -0.206 4.206 25 C -0.141 4.141 26 C -0.151 4.151 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.855 -4.166 8.702 13.095 hybrid contribution 0.391 -0.184 -1.023 1.111 sum 9.246 -4.349 7.679 12.782 Atomic orbital electron populations 1.22196 0.96076 1.03207 1.01236 1.21236 0.94527 0.81367 1.03250 1.57622 1.79448 1.23964 1.22755 1.18768 0.96747 0.90790 0.80269 1.21800 1.02265 1.27242 1.05551 0.90149 1.25613 0.99856 0.94683 0.97434 1.70063 1.37740 1.31145 1.17430 0.86135 0.81150 0.79432 0.77988 1.16196 1.22930 1.19649 1.01281 0.73333 0.72917 0.72165 1.93516 1.71612 1.76208 1.58233 1.93535 1.86801 1.33429 1.86047 1.55832 1.24141 1.68812 1.38541 1.21317 0.89682 0.92979 0.94409 0.87925 1.21807 1.01933 0.94758 0.97706 1.20412 0.98137 0.99711 0.97585 1.20480 0.97339 0.95908 1.00274 1.21185 0.99052 0.96200 0.97055 0.92667 1.21976 0.98854 1.01232 0.98532 1.21329 0.96512 0.98846 0.97370 1.22095 0.93673 0.97236 1.02100 0.93397 0.89053 0.93609 0.90017 0.89715 0.96282 0.96539 0.92834 0.74592 0.92715 0.89026 0.91774 0.94860 0.89696 0.93075 0.92896 0.94182 0.90101 0.89902 0.90860 0.89530 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.47 16 2 C 0.12 4.08 6.06 86.38 0.52 4.61 16 3 N -1.00 -40.65 2.82 -519.85 -1.47 -42.12 16 4 C 0.26 12.76 5.30 85.63 0.45 13.22 16 5 C -0.53 -26.19 6.90 25.60 0.18 -26.02 16 6 H 0.08 3.73 6.58 -2.91 -0.02 3.71 16 7 C 0.02 1.26 5.46 84.65 0.46 1.72 16 8 N -0.92 -52.54 13.29 21.44 0.28 -52.26 16 9 Si 0.93 40.50 24.99 68.60 1.71 42.22 16 10 H -0.24 -9.40 7.01 99.48 0.70 -8.70 16 11 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.27 -11.59 6.52 99.48 0.65 -10.95 16 13 S 2.79 110.85 6.00 -56.49 -0.34 110.51 16 14 O -1.01 -40.67 17.11 -128.00 -2.19 -42.86 16 15 O -1.01 -48.16 15.77 -128.00 -2.02 -50.18 16 16 N -1.11 -35.10 5.35 -171.29 -0.92 -36.01 16 17 C 0.12 4.01 1.93 44.53 0.09 4.09 16 18 H 0.10 4.19 2.60 -2.38 -0.01 4.18 16 19 C -0.12 -3.80 5.20 30.20 0.16 -3.64 16 20 C -0.12 -3.99 5.26 28.74 0.15 -3.84 16 21 C -0.10 -2.88 4.68 28.74 0.13 -2.74 16 22 C -0.12 -3.44 2.21 -11.19 -0.02 -3.46 16 23 H 0.06 2.05 3.47 -2.39 -0.01 2.04 16 24 C -0.15 -3.90 7.56 71.98 0.54 -3.36 16 25 C -0.10 -2.43 4.89 30.14 0.15 -2.28 16 26 C -0.11 -2.94 5.43 31.32 0.17 -2.77 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 31 H 0.08 2.46 7.61 -2.38 -0.02 2.44 16 32 H 0.02 1.00 8.11 -2.39 -0.02 0.98 16 33 H 0.02 0.93 6.91 -2.39 -0.02 0.92 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.42 10.24 8.68 -96.74 -0.84 9.40 16 36 H 0.05 1.86 7.35 -2.39 -0.02 1.84 16 37 H 0.09 2.19 6.98 -2.39 -0.02 2.17 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.03 1.40 7.47 -2.39 -0.02 1.38 16 40 H 0.08 1.85 7.47 -2.38 -0.02 1.83 16 41 H 0.05 1.46 7.97 -2.39 -0.02 1.44 16 42 H 0.05 1.36 8.09 -2.39 -0.02 1.34 16 43 H 0.04 1.14 7.50 -2.39 -0.02 1.13 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.58 6.63 -2.39 -0.02 1.57 16 46 H 0.07 1.54 7.67 -2.39 -0.02 1.52 16 47 H 0.09 1.75 7.95 -2.39 -0.02 1.74 16 48 H 0.05 1.56 7.79 -2.39 -0.02 1.54 16 Total: -1.00 -64.89 361.05 -1.17 -66.06 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.04 Total: 33.57 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.72 Total: -28.94 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -2.10 Total: -130.39 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -4.21 Total: -93.04 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.71 Total: 42.22 kcal Atomic # 16 Polarization: 110.85 SS G_CDS: -0.34 Total: 110.51 kcal Total: -64.89 -1.17 -66.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337159973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.406 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds