Wall clock time and date at job start Tue Mar 31 2020 12:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47003 * 2 1 4 4 C 1.46503 * 119.99424 * 85.00392 * 3 2 1 5 5 C 1.50699 * 109.46825 * 274.99799 * 4 3 2 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65597 * 120.00274 * 265.00473 * 3 2 1 14 14 O 1.42097 * 106.40126 * 23.53757 * 13 3 2 15 15 O 1.42105 * 106.40049 * 156.45912 * 13 3 2 16 16 N 1.65596 * 107.21591 * 269.99752 * 13 3 2 17 17 C 1.46497 * 120.00232 * 65.00210 * 16 13 3 18 18 H 1.09002 * 109.62482 * 24.99501 * 17 16 13 19 19 C 1.54247 * 109.62983 * 264.61483 * 17 16 13 20 20 C 1.45388 * 112.49367 * 160.50912 * 19 17 16 21 21 C 1.54243 * 112.55963 * 61.62770 * 20 19 17 22 22 C 1.50474 * 108.51254 * 280.12639 * 21 20 19 23 23 H 1.09002 * 108.87915 * 333.37723 * 22 21 20 24 24 C 1.52999 * 108.87737 * 214.93000 * 22 21 20 25 25 C 1.54064 * 112.49838 * 94.15606 * 22 21 20 26 26 C 1.50470 * 109.63180 * 145.38333 * 17 16 13 27 27 H 1.08993 * 109.47030 * 299.99356 * 1 2 3 28 28 H 1.08995 * 109.47716 * 59.99843 * 1 2 3 29 29 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47049 * 240.00632 * 2 1 3 31 31 H 1.08995 * 109.47716 * 120.00157 * 2 1 3 32 32 H 1.09004 * 109.46958 * 155.00211 * 4 3 2 33 33 H 1.08997 * 109.47731 * 34.99887 * 4 3 2 34 34 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00095 * 244.99723 * 16 13 3 36 36 H 1.09000 * 108.89078 * 281.05473 * 19 17 16 37 37 H 1.09000 * 108.89478 * 39.54432 * 19 17 16 38 38 H 1.08995 * 108.72497 * 300.89005 * 20 19 17 39 39 H 1.08998 * 108.83289 * 182.43642 * 20 19 17 40 40 H 1.08996 * 109.63195 * 160.42170 * 21 20 19 41 41 H 1.08998 * 109.62796 * 39.83242 * 21 20 19 42 42 H 1.09003 * 109.46912 * 297.02603 * 24 22 21 43 43 H 1.09006 * 109.47327 * 57.02418 * 24 22 21 44 44 H 1.08997 * 109.47230 * 177.02412 * 24 22 21 45 45 H 1.09008 * 108.81163 * 197.42332 * 25 22 21 46 46 H 1.08995 * 108.73166 * 79.07883 * 25 22 21 47 47 H 1.08997 * 108.88011 * 334.63580 * 26 17 16 48 48 H 1.09001 * 108.87814 * 93.08634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0229 2.5941 0.9949 7 6 0.7226 3.4678 2.7941 8 7 -0.4315 4.0086 3.1188 9 14 2.2081 3.7013 3.9023 10 1 2.9463 4.9222 3.4901 11 1 3.1014 2.5205 3.7880 12 1 1.7577 3.8467 5.3099 13 16 2.4120 2.1203 -1.4286 14 8 1.6867 1.4417 -2.4447 15 8 2.3055 3.5188 -1.1996 16 7 4.0142 1.8139 -1.7137 17 6 4.4656 0.4416 -1.9570 18 1 3.6389 -0.1519 -2.3475 19 6 4.9714 -0.1789 -0.6385 20 6 5.0071 -1.6316 -0.6852 21 6 5.9644 -2.1654 -1.7704 22 6 5.2665 -2.0914 -3.1015 23 1 4.1902 -2.1490 -2.9391 24 6 5.7002 -3.2849 -3.9548 25 6 5.5868 -0.7913 -3.8635 26 6 5.5956 0.4497 -2.9505 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.9079 2.8918 1.1514 33 1 2.4690 1.4182 2.0481 34 1 -0.5112 4.5289 3.9336 35 1 4.6539 2.5431 -1.7197 36 1 5.9777 0.1889 -0.4385 37 1 4.3152 0.1343 0.1736 38 1 4.0017 -2.0000 -0.8891 39 1 5.3299 -2.0070 0.2859 40 1 6.2258 -3.2006 -1.5511 41 1 6.8666 -1.5544 -1.7955 42 1 6.7716 -3.2243 -4.1465 43 1 5.4779 -4.2109 -3.4243 44 1 5.1603 -3.2700 -4.9016 45 1 4.8394 -0.6481 -4.6440 46 1 6.5668 -0.8914 -4.3300 47 1 5.5147 1.3434 -3.5694 48 1 6.5411 0.4824 -2.4091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337159974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:24 Heat of formation + Delta-G solvation = -99.282124 kcal Electronic energy + Delta-G solvation = -27331.292721 eV Core-core repulsion = 23740.085846 eV Total energy + Delta-G solvation = -3591.206876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.57854 -36.64659 -36.17471 -35.29916 -35.17952 -33.00491 -32.48577 -30.84965 -30.05729 -27.24028 -27.10051 -24.68406 -23.06804 -22.52804 -21.73189 -20.80570 -19.45508 -18.95620 -17.10639 -17.08632 -16.53159 -16.22418 -15.47697 -15.18634 -15.06168 -14.40109 -14.25323 -13.92027 -13.58881 -13.28790 -13.21520 -13.11305 -12.90935 -12.73706 -12.54762 -12.11258 -12.04839 -11.88322 -11.62225 -11.56223 -11.47824 -11.31683 -11.29002 -11.06189 -11.01173 -10.93197 -10.73298 -10.53496 -10.44074 -10.37826 -10.35457 -10.22369 -10.12749 -9.43175 -9.29629 -8.56745 -8.12543 -6.05807 -4.04258 1.18697 3.27611 3.32696 3.34763 3.46427 4.11684 4.38058 4.39932 4.48404 4.64789 4.86140 4.88529 4.92548 5.03562 5.18729 5.21816 5.24088 5.27868 5.33483 5.39660 5.49899 5.54919 5.59529 5.73960 5.80222 5.83827 5.87227 5.93753 5.94689 6.02428 6.07802 6.11590 6.13949 6.14647 6.27923 6.30798 6.34042 6.43710 6.65641 6.72799 7.02676 7.09697 7.21049 7.48374 7.61132 8.51835 9.00267 9.53558 11.07510 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019037 B = 0.004334 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.428847 B = 6458.255574 C = 6669.109719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.136 3.864 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.285 1.285 13 S 2.779 3.221 14 O -0.992 6.992 15 O -0.965 6.965 16 N -1.131 6.131 17 C 0.155 3.845 18 H 0.091 0.909 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.098 4.098 23 H 0.071 0.929 24 C -0.148 4.148 25 C -0.110 4.110 26 C -0.123 4.123 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.120 -13.961 -10.515 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 N -0.828 5.828 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.190 1.190 12 H -0.211 1.211 13 S 2.787 3.213 14 O -0.975 6.975 15 O -0.949 6.949 16 N -0.889 5.889 17 C 0.047 3.953 18 H 0.109 0.891 19 C -0.181 4.181 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.116 4.116 23 H 0.090 0.910 24 C -0.205 4.205 25 C -0.148 4.148 26 C -0.162 4.162 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.304 -13.484 -10.930 22.492 hybrid contribution 1.199 0.417 1.002 1.617 sum 15.503 -13.067 -9.928 22.576 Atomic orbital electron populations 1.22265 0.95967 1.00854 1.04168 1.21002 0.95205 0.81915 1.00912 1.57528 1.78705 1.23019 1.23525 1.19413 0.98071 0.91158 0.80806 1.21433 0.95856 1.31609 1.07784 0.90023 1.24874 0.95647 0.94989 0.97488 1.69895 1.24031 1.34419 1.25085 0.86949 0.83654 0.79275 0.80365 1.19940 1.19028 1.21092 1.02033 0.72833 0.73291 0.73124 1.93543 1.70380 1.76433 1.57131 1.93646 1.85228 1.30430 1.85556 1.56431 1.29577 1.14146 1.88712 1.20474 0.98083 0.81889 0.94836 0.89141 1.21061 1.02606 0.96119 0.98342 1.20426 1.00120 0.95793 0.99232 1.21461 0.98668 1.00946 0.94052 1.21031 1.00911 0.94543 0.95151 0.91013 1.21946 1.01073 0.97664 0.99819 1.21939 1.01807 0.93184 0.97851 1.21652 0.98360 0.98588 0.97635 0.89839 0.92726 0.93150 0.92161 0.91162 0.95476 0.94979 0.92607 0.75654 0.91727 0.90517 0.91824 0.91846 0.91829 0.91642 0.92895 0.92694 0.92876 0.91904 0.91953 0.91178 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.83 37.16 0.37 -2.75 16 2 C 0.14 2.25 5.65 -4.04 -0.02 2.23 16 3 N -0.99 -19.28 2.33 -115.66 -0.27 -19.55 16 4 C 0.23 5.23 4.19 -5.19 -0.02 5.21 16 5 C -0.53 -14.68 8.97 -34.44 -0.31 -14.99 16 6 H 0.08 2.48 7.13 -52.49 -0.37 2.11 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.78 53.72 6.03 -107.50 -0.65 53.07 16 14 O -0.99 -20.40 16.45 -57.17 -0.94 -21.34 16 15 O -0.96 -22.83 17.11 -57.17 -0.98 -23.81 16 16 N -1.13 -15.82 5.41 -5.42 -0.03 -15.85 16 17 C 0.15 1.80 2.47 -68.54 -0.17 1.63 16 18 H 0.09 1.13 6.00 -51.93 -0.31 0.82 16 19 C -0.14 -1.51 4.90 -29.66 -0.15 -1.66 16 20 C -0.12 -1.06 5.25 -29.66 -0.16 -1.22 16 21 C -0.11 -0.89 5.13 -27.34 -0.14 -1.03 16 22 C -0.10 -0.80 2.20 -91.33 -0.20 -1.00 16 23 H 0.07 0.65 6.64 -51.93 -0.34 0.31 16 24 C -0.15 -1.04 8.84 37.16 0.33 -0.71 16 25 C -0.11 -0.92 5.23 -25.62 -0.13 -1.06 16 26 C -0.12 -1.16 4.96 -27.43 -0.14 -1.30 16 27 H 0.08 1.73 6.59 -51.93 -0.34 1.39 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.86 7.24 -51.92 -0.38 0.48 16 31 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 32 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 33 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.41 4.97 8.83 -34.47 -0.30 4.66 16 36 H 0.06 0.63 7.49 -51.93 -0.39 0.25 16 37 H 0.08 0.94 7.14 -51.93 -0.37 0.57 16 38 H 0.06 0.58 7.47 -51.93 -0.39 0.20 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.45 7.63 -51.93 -0.40 0.06 16 41 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 42 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 43 H 0.05 0.36 8.01 -51.93 -0.42 -0.05 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.46 7.95 -51.93 -0.41 0.04 16 47 H 0.07 0.67 7.94 -51.93 -0.41 0.25 16 48 H 0.07 0.56 6.65 -51.93 -0.35 0.21 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -33.64 371.53 -10.40 -44.04 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.39 Total: 2.81 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.84 Total: -14.66 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.47 Total: -61.98 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.92 Total: -45.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.65 Total: 53.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.64 -10.40 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337159974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.240 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds