Wall clock time and date at job start Tue Mar 31 2020 12:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47003 * 2 1 4 4 C 1.46503 * 119.99424 * 85.00392 * 3 2 1 5 5 C 1.50699 * 109.46825 * 274.99799 * 4 3 2 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65597 * 120.00274 * 265.00473 * 3 2 1 14 14 O 1.42097 * 106.40126 * 23.53757 * 13 3 2 15 15 O 1.42105 * 106.40049 * 156.45912 * 13 3 2 16 16 N 1.65596 * 107.21591 * 269.99752 * 13 3 2 17 17 C 1.46497 * 120.00232 * 65.00210 * 16 13 3 18 18 H 1.09002 * 109.62482 * 24.99501 * 17 16 13 19 19 C 1.54247 * 109.62983 * 264.61483 * 17 16 13 20 20 C 1.45388 * 112.49367 * 160.50912 * 19 17 16 21 21 C 1.54243 * 112.55963 * 61.62770 * 20 19 17 22 22 C 1.50474 * 108.51254 * 280.12639 * 21 20 19 23 23 H 1.09002 * 108.87915 * 333.37723 * 22 21 20 24 24 C 1.52999 * 108.87737 * 214.93000 * 22 21 20 25 25 C 1.54064 * 112.49838 * 94.15606 * 22 21 20 26 26 C 1.50470 * 109.63180 * 145.38333 * 17 16 13 27 27 H 1.08993 * 109.47030 * 299.99356 * 1 2 3 28 28 H 1.08995 * 109.47716 * 59.99843 * 1 2 3 29 29 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47049 * 240.00632 * 2 1 3 31 31 H 1.08995 * 109.47716 * 120.00157 * 2 1 3 32 32 H 1.09004 * 109.46958 * 155.00211 * 4 3 2 33 33 H 1.08997 * 109.47731 * 34.99887 * 4 3 2 34 34 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00095 * 244.99723 * 16 13 3 36 36 H 1.09000 * 108.89078 * 281.05473 * 19 17 16 37 37 H 1.09000 * 108.89478 * 39.54432 * 19 17 16 38 38 H 1.08995 * 108.72497 * 300.89005 * 20 19 17 39 39 H 1.08998 * 108.83289 * 182.43642 * 20 19 17 40 40 H 1.08996 * 109.63195 * 160.42170 * 21 20 19 41 41 H 1.08998 * 109.62796 * 39.83242 * 21 20 19 42 42 H 1.09003 * 109.46912 * 297.02603 * 24 22 21 43 43 H 1.09006 * 109.47327 * 57.02418 * 24 22 21 44 44 H 1.08997 * 109.47230 * 177.02412 * 24 22 21 45 45 H 1.09008 * 108.81163 * 197.42332 * 25 22 21 46 46 H 1.08995 * 108.73166 * 79.07883 * 25 22 21 47 47 H 1.08997 * 108.88011 * 334.63580 * 26 17 16 48 48 H 1.09001 * 108.87814 * 93.08634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0229 2.5941 0.9949 7 6 0.7226 3.4678 2.7941 8 7 -0.4315 4.0086 3.1188 9 14 2.2081 3.7013 3.9023 10 1 2.9463 4.9222 3.4901 11 1 3.1014 2.5205 3.7880 12 1 1.7577 3.8467 5.3099 13 16 2.4120 2.1203 -1.4286 14 8 1.6867 1.4417 -2.4447 15 8 2.3055 3.5188 -1.1996 16 7 4.0142 1.8139 -1.7137 17 6 4.4656 0.4416 -1.9570 18 1 3.6389 -0.1519 -2.3475 19 6 4.9714 -0.1789 -0.6385 20 6 5.0071 -1.6316 -0.6852 21 6 5.9644 -2.1654 -1.7704 22 6 5.2665 -2.0914 -3.1015 23 1 4.1902 -2.1490 -2.9391 24 6 5.7002 -3.2849 -3.9548 25 6 5.5868 -0.7913 -3.8635 26 6 5.5956 0.4497 -2.9505 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.9079 2.8918 1.1514 33 1 2.4690 1.4182 2.0481 34 1 -0.5112 4.5289 3.9336 35 1 4.6539 2.5431 -1.7197 36 1 5.9777 0.1889 -0.4385 37 1 4.3152 0.1343 0.1736 38 1 4.0017 -2.0000 -0.8891 39 1 5.3299 -2.0070 0.2859 40 1 6.2258 -3.2006 -1.5511 41 1 6.8666 -1.5544 -1.7955 42 1 6.7716 -3.2243 -4.1465 43 1 5.4779 -4.2109 -3.4243 44 1 5.1603 -3.2700 -4.9016 45 1 4.8394 -0.6481 -4.6440 46 1 6.5668 -0.8914 -4.3300 47 1 5.5147 1.3434 -3.5694 48 1 6.5411 0.4824 -2.4091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337159974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:23 Heat of formation + Delta-G solvation = -123.062134 kcal Electronic energy + Delta-G solvation = -27332.323900 eV Core-core repulsion = 23740.085846 eV Total energy + Delta-G solvation = -3592.238054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34287 -38.28857 -37.77745 -36.85772 -36.20054 -34.58456 -33.72117 -31.76007 -31.67117 -29.08547 -27.80217 -25.43698 -24.33999 -23.73379 -23.37515 -21.58199 -20.45798 -20.11483 -19.05767 -18.61261 -18.18155 -17.43257 -16.81534 -16.12926 -15.94520 -15.79984 -15.35857 -15.19140 -14.80233 -14.68498 -14.56844 -14.34462 -13.89652 -13.82419 -13.73862 -13.49881 -13.19153 -13.18165 -13.07607 -13.04686 -12.85611 -12.76546 -12.72544 -12.41091 -12.17070 -12.08322 -11.95062 -11.76840 -11.69000 -11.50877 -11.37558 -11.16668 -11.05781 -11.02391 -10.73234 -10.37070 -9.78547 -8.23606 -6.27672 -0.33998 1.38196 1.41991 1.49837 2.03053 2.38491 2.65440 3.09931 3.42527 3.66000 3.76082 3.91147 4.03056 4.11071 4.15829 4.31870 4.42257 4.44661 4.50153 4.53194 4.55676 4.57083 4.68302 4.85628 4.87001 4.92349 4.94790 4.97345 5.08601 5.09966 5.16925 5.21303 5.30858 5.32702 5.37768 5.40503 5.41975 5.52201 5.53571 5.53882 5.57709 5.61325 5.70742 5.81315 6.17889 6.37842 6.76404 7.34263 8.93615 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019037 B = 0.004334 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.428847 B = 6458.255574 C = 6669.109719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.130 3.870 3 N -0.989 5.989 4 C 0.236 3.764 5 C -0.533 4.533 6 H 0.035 0.965 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.940 3.060 10 H -0.273 1.273 11 H -0.227 1.227 12 H -0.283 1.283 13 S 2.791 3.209 14 O -1.010 7.010 15 O -1.015 7.015 16 N -1.113 6.113 17 C 0.147 3.853 18 H 0.081 0.919 19 C -0.138 4.138 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.099 4.099 23 H 0.059 0.941 24 C -0.146 4.146 25 C -0.109 4.109 26 C -0.122 4.122 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.422 0.578 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.758 -16.134 -10.315 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.830 5.830 4 C 0.112 3.888 5 C -0.572 4.572 6 H 0.053 0.947 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.149 1.149 12 H -0.209 1.209 13 S 2.799 3.201 14 O -0.993 6.993 15 O -0.999 6.999 16 N -0.876 5.876 17 C 0.041 3.959 18 H 0.099 0.901 19 C -0.178 4.178 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.118 4.118 23 H 0.077 0.923 24 C -0.203 4.203 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.948 -15.688 -10.757 26.153 hybrid contribution -0.005 1.036 0.807 1.313 sum 17.943 -14.651 -9.950 25.211 Atomic orbital electron populations 1.22233 0.97495 1.02240 1.01143 1.21283 0.93950 0.80810 1.03511 1.57423 1.79401 1.23905 1.22267 1.19204 0.95112 0.91820 0.82702 1.21764 0.96848 1.31605 1.06996 0.94694 1.25903 0.99117 0.94672 0.99516 1.70078 1.26995 1.36058 1.26069 0.85835 0.79745 0.80537 0.77612 1.19879 1.14913 1.20880 1.01403 0.73872 0.71931 0.72869 1.93513 1.71756 1.76391 1.57614 1.93573 1.86533 1.33663 1.86157 1.55950 1.27602 1.15922 1.88078 1.20763 0.98633 0.80048 0.96466 0.90113 1.21042 1.02826 0.97130 0.96753 1.20432 1.00413 0.94638 1.00201 1.21430 0.98411 1.01632 0.93147 1.21036 1.00270 0.94767 0.95696 0.92274 1.21925 1.01531 0.97323 0.99520 1.21943 1.02403 0.92878 0.97461 1.21648 0.97997 0.99083 0.97345 0.93463 0.95068 0.89570 0.89462 0.88508 0.95086 0.92446 0.92613 0.74234 0.90459 0.91955 0.92190 0.90954 0.90839 0.90992 0.92063 0.92289 0.93171 0.92858 0.90414 0.91372 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.23 9.83 71.98 0.71 -5.52 16 2 C 0.13 4.11 5.65 86.38 0.49 4.60 16 3 N -0.99 -38.06 2.33 -519.83 -1.21 -39.27 16 4 C 0.24 10.55 4.19 85.63 0.36 10.90 16 5 C -0.53 -30.44 8.97 25.60 0.23 -30.22 16 6 H 0.03 2.26 7.13 -2.91 -0.02 2.24 16 7 C 0.01 0.29 5.47 84.65 0.46 0.76 16 8 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 9 Si 0.94 42.59 27.47 68.60 1.88 44.48 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.23 -8.77 6.54 99.48 0.65 -8.12 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 S 2.79 107.82 6.03 -56.49 -0.34 107.48 16 14 O -1.01 -41.81 16.45 -128.00 -2.11 -43.92 16 15 O -1.02 -49.12 17.11 -128.00 -2.19 -51.31 16 16 N -1.11 -29.40 5.41 -171.05 -0.93 -30.33 16 17 C 0.15 3.09 2.47 44.60 0.11 3.20 16 18 H 0.08 1.88 6.00 -2.39 -0.01 1.86 16 19 C -0.14 -2.49 4.90 28.70 0.14 -2.35 16 20 C -0.12 -1.74 5.25 28.69 0.15 -1.59 16 21 C -0.11 -1.31 5.13 30.20 0.15 -1.16 16 22 C -0.10 -1.35 2.20 -11.25 -0.02 -1.37 16 23 H 0.06 0.95 6.64 -2.39 -0.02 0.94 16 24 C -0.15 -1.66 8.84 71.98 0.64 -1.02 16 25 C -0.11 -1.55 5.23 31.32 0.16 -1.38 16 26 C -0.12 -1.95 4.96 30.14 0.15 -1.80 16 27 H 0.05 2.04 6.59 -2.39 -0.02 2.02 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.09 2.31 7.24 -2.38 -0.02 2.30 16 31 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 32 H 0.03 1.38 7.04 -2.39 -0.02 1.36 16 33 H 0.06 2.30 7.06 -2.39 -0.02 2.28 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.42 9.46 8.83 -96.74 -0.85 8.60 16 36 H 0.08 1.20 7.49 -2.39 -0.02 1.19 16 37 H 0.06 1.33 7.14 -2.39 -0.02 1.31 16 38 H 0.06 0.93 7.47 -2.39 -0.02 0.91 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.77 7.63 -2.39 -0.02 0.75 16 41 H 0.07 0.80 6.98 -2.39 -0.02 0.78 16 42 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 43 H 0.06 0.62 8.01 -2.38 -0.02 0.60 16 44 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 45 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.08 0.89 7.95 -2.39 -0.02 0.87 16 47 H 0.07 1.14 7.94 -2.39 -0.02 1.12 16 48 H 0.08 1.08 6.65 -2.39 -0.02 1.07 16 Total: -1.00 -76.48 371.53 -0.83 -77.31 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.03 Total: 22.57 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.73 Total: -26.96 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -1.84 Total: -129.64 kcal Atomic # 8 Polarization: -90.93 SS G_CDS: -4.30 Total: -95.23 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Atomic # 16 Polarization: 107.82 SS G_CDS: -0.34 Total: 107.48 kcal Total: -76.48 -0.83 -77.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337159974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.751 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds