Wall clock time and date at job start Tue Mar 31 2020 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 109.46812 * 2 1 4 4 C 1.46492 * 119.99684 * 274.99700 * 3 2 1 5 5 C 1.50707 * 109.47593 * 275.00104 * 4 3 2 6 6 H 1.08000 * 119.99275 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99815 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00352 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47063 * 90.00170 * 9 7 5 11 11 H 1.48497 * 109.47327 * 210.00121 * 9 7 5 12 12 H 1.48503 * 109.47091 * 330.00681 * 9 7 5 13 13 S 1.65597 * 120.00069 * 95.00301 * 3 2 1 14 14 O 1.42099 * 106.40196 * 336.45849 * 13 3 2 15 15 O 1.42092 * 106.40069 * 203.53673 * 13 3 2 16 16 N 1.65599 * 107.22052 * 89.99540 * 13 3 2 17 17 C 1.46501 * 119.99923 * 65.00069 * 16 13 3 18 18 H 1.09000 * 109.78197 * 335.47980 * 17 16 13 19 19 C 1.50546 * 109.57957 * 96.04735 * 17 16 13 20 20 C 1.54069 * 112.41623 * 213.92514 * 19 17 16 21 21 C 1.54056 * 112.81521 * 318.27597 * 20 19 17 22 22 C 1.50476 * 112.50048 * 318.28454 * 21 20 19 23 23 H 1.09002 * 109.62685 * 334.44737 * 22 21 20 24 24 C 1.52997 * 109.78995 * 213.95638 * 22 21 20 25 25 C 1.54245 * 108.51856 * 94.15187 * 22 21 20 26 26 C 1.45542 * 112.40792 * 280.00900 * 25 22 21 27 27 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47385 * 300.00104 * 1 2 3 29 29 H 1.08993 * 109.47639 * 60.00045 * 1 2 3 30 30 H 1.08996 * 109.47101 * 239.99894 * 2 1 3 31 31 H 1.09003 * 109.47280 * 119.99542 * 2 1 3 32 32 H 1.09007 * 109.47448 * 35.00463 * 4 3 2 33 33 H 1.09001 * 109.47024 * 155.00717 * 4 3 2 34 34 H 0.96996 * 119.99931 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00357 * 245.00038 * 16 13 3 36 36 H 1.09000 * 108.92627 * 93.16958 * 19 17 16 37 37 H 1.09006 * 108.83640 * 334.61947 * 19 17 16 38 38 H 1.09000 * 108.81197 * 197.41864 * 20 19 17 39 39 H 1.08999 * 108.81384 * 79.13971 * 20 19 17 40 40 H 1.09003 * 108.87949 * 197.50496 * 21 20 19 41 41 H 1.09005 * 108.87812 * 79.06574 * 21 20 19 42 42 H 1.08994 * 109.47370 * 300.86960 * 24 22 21 43 43 H 1.08994 * 109.46980 * 60.87608 * 24 22 21 44 44 H 1.09003 * 109.46530 * 180.87104 * 24 22 21 45 45 H 1.08997 * 108.89530 * 159.25760 * 25 22 21 46 46 H 1.09002 * 108.89487 * 40.76592 * 25 22 21 47 47 H 1.09002 * 108.89596 * 182.69054 * 26 25 22 48 48 H 1.09003 * 108.89788 * 301.28088 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3839 7 6 3.8528 2.3614 -3.0844 8 7 5.0190 2.0819 -3.6243 9 14 2.6811 3.5330 -3.9468 10 1 2.9447 4.9214 -3.4909 11 1 2.8863 3.4467 -5.4150 12 1 1.2807 3.1622 -3.6200 13 16 2.4121 2.1203 1.4286 14 8 1.6869 1.4416 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0143 1.8138 1.7137 17 6 5.0350 2.3526 0.8114 18 1 4.5999 2.5339 -0.1714 19 6 5.5759 3.6404 1.3730 20 6 5.9496 4.6506 0.2714 21 6 6.6640 3.9931 -0.9247 22 6 7.6776 2.9666 -0.4968 23 1 8.0298 3.1968 0.5087 24 6 8.8593 2.9690 -1.4685 25 6 7.0032 1.5794 -0.5045 26 6 6.1981 1.3473 0.6855 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 5.2711 2.4850 -4.4698 35 1 4.2771 1.2776 2.4781 36 1 6.4634 3.4219 1.9669 37 1 4.8205 4.0871 2.0196 38 1 6.6050 5.4097 0.6983 39 1 5.0403 5.1345 -0.0849 40 1 7.1685 4.7671 -1.5031 41 1 5.9196 3.5109 -1.5585 42 1 8.5034 2.7452 -2.4741 43 1 9.3338 3.9502 -1.4610 44 1 9.5827 2.2132 -1.1625 45 1 7.7750 0.8120 -0.5636 46 1 6.3637 1.5027 -1.3839 47 1 5.7892 0.3377 0.6437 48 1 6.8357 1.4332 1.5654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337159975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:26 Heat of formation + Delta-G solvation = -101.948823 kcal Electronic energy + Delta-G solvation = -28340.491638 eV Core-core repulsion = 24749.169125 eV Total energy + Delta-G solvation = -3591.322512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.85493 -36.64660 -36.16359 -35.21682 -34.67049 -32.72906 -31.96700 -30.53985 -30.24776 -27.16695 -26.58586 -23.59316 -22.92411 -22.55776 -21.61277 -20.11469 -18.74729 -18.55424 -17.24630 -16.86236 -16.65683 -15.94439 -15.22224 -14.54120 -14.25345 -14.08472 -14.03990 -13.69539 -13.44591 -13.05150 -12.83637 -12.71677 -12.50460 -12.39033 -12.10385 -12.03206 -11.84537 -11.67113 -11.49246 -11.38150 -11.32753 -11.16722 -11.01145 -10.98484 -10.53580 -10.50422 -10.44568 -10.25402 -10.12499 -9.91640 -9.85019 -9.69166 -9.53008 -9.35700 -8.84724 -8.64548 -8.12238 -6.22425 -4.21837 1.31027 3.22855 3.30015 3.35256 3.54621 4.16680 4.30554 5.02637 5.05747 5.20435 5.22727 5.35358 5.40758 5.63507 5.66990 5.70265 5.72269 5.76916 5.86470 5.91410 5.98584 6.03248 6.15440 6.20039 6.24689 6.31492 6.34900 6.41710 6.51114 6.51727 6.55489 6.60379 6.72047 6.78988 6.84403 6.85959 6.91612 6.94934 7.03048 7.14242 7.27573 7.32515 7.37072 7.53429 7.65338 8.34619 8.79106 9.38234 10.86452 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.007758 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.567962 B = 3608.124827 C = 4921.944363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.988 5.988 4 C 0.210 3.790 5 C -0.548 4.548 6 H 0.091 0.909 7 C 0.085 3.915 8 N -0.879 5.879 9 Si 0.860 3.140 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.124 6.124 17 C 0.130 3.870 18 H 0.144 0.856 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.079 4.079 23 H 0.056 0.944 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.104 4.104 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -1.405 6.099 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.828 5.828 4 C 0.086 3.914 5 C -0.587 4.587 6 H 0.109 0.891 7 C -0.119 4.119 8 N -0.516 5.516 9 Si 0.687 3.313 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.881 5.881 17 C 0.024 3.976 18 H 0.161 0.839 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.167 4.167 22 C -0.097 4.097 23 H 0.074 0.926 24 C -0.199 4.199 25 C -0.165 4.165 26 C -0.143 4.143 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.234 0.766 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.078 0.922 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.773 -0.732 6.311 6.596 hybrid contribution -0.042 0.163 -0.441 0.472 sum 1.730 -0.569 5.870 6.146 Atomic orbital electron populations 1.22218 0.97046 1.01511 1.02221 1.20986 0.93441 0.82606 1.02532 1.57508 1.79015 1.22977 1.23330 1.19628 0.98370 0.92184 0.81243 1.21509 1.01110 1.29494 1.06578 0.89107 1.24753 0.94845 0.95750 0.96574 1.69821 1.19957 1.43063 1.18723 0.87081 0.82516 0.82486 0.79190 1.19708 1.21176 1.18993 1.01717 0.72712 0.73691 0.72507 1.93541 1.70929 1.76283 1.57964 1.93563 1.86171 1.31114 1.85684 1.56065 1.25384 1.68328 1.38306 1.21218 0.89045 0.91718 0.95604 0.83855 1.21832 1.00283 0.96190 0.98323 1.21805 1.00052 0.97285 0.95725 1.21580 0.99217 0.98004 0.97913 1.20762 0.95006 0.95810 0.98156 0.92555 1.21842 0.97384 1.00143 1.00573 1.20645 0.99346 0.95648 1.00848 1.20594 0.96227 0.99025 0.98483 0.92202 0.92628 0.92316 0.89932 0.91643 0.94612 0.93991 0.92417 0.76575 0.92873 0.91979 0.93390 0.91957 0.93395 0.88143 0.91999 0.93716 0.93687 0.93472 0.87415 0.92174 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.16 6.06 -4.04 -0.02 2.14 16 3 N -0.99 -19.08 2.82 -115.66 -0.33 -19.40 16 4 C 0.21 4.57 4.38 -5.19 -0.02 4.55 16 5 C -0.55 -12.83 7.46 -34.44 -0.26 -13.09 16 6 H 0.09 2.21 6.54 -52.49 -0.34 1.87 16 7 C 0.09 2.08 5.11 -17.82 -0.09 1.99 16 8 N -0.88 -21.97 13.31 55.43 0.74 -21.24 16 9 Si 0.86 19.41 27.47 -169.99 -4.67 14.74 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 13 S 2.79 53.92 6.01 -107.50 -0.65 53.27 16 14 O -1.00 -20.16 17.11 -57.17 -0.98 -21.14 16 15 O -0.98 -21.80 16.39 -57.17 -0.94 -22.73 16 16 N -1.12 -18.80 5.39 -5.38 -0.03 -18.83 16 17 C 0.13 2.30 2.05 -68.50 -0.14 2.16 16 18 H 0.14 2.96 3.13 -51.93 -0.16 2.80 16 19 C -0.13 -2.13 5.05 -27.40 -0.14 -2.27 16 20 C -0.11 -1.88 5.85 -25.62 -0.15 -2.03 16 21 C -0.13 -2.30 4.89 -27.44 -0.13 -2.43 16 22 C -0.08 -1.26 2.39 -91.23 -0.22 -1.48 16 23 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 24 C -0.14 -2.09 8.88 37.16 0.33 -1.76 16 25 C -0.13 -2.17 4.68 -29.60 -0.14 -2.30 16 26 C -0.10 -1.68 4.83 -29.60 -0.14 -1.82 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 31 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 32 H 0.04 0.78 7.17 -51.93 -0.37 0.40 16 33 H 0.04 0.97 6.34 -51.93 -0.33 0.64 16 34 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.40 5.62 8.85 -34.47 -0.30 5.32 16 36 H 0.05 0.79 6.63 -51.93 -0.34 0.45 16 37 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.10 2.12 5.93 -51.93 -0.31 1.81 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.60 8.11 -51.93 -0.42 0.17 16 44 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.05 0.75 7.96 -51.93 -0.41 0.33 16 46 H 0.11 2.23 6.50 -51.93 -0.34 1.89 16 47 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 48 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -26.66 367.44 -10.32 -36.98 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -8.26 Total: 11.32 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.75 Total: -18.51 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.38 Total: -59.47 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.92 Total: -43.87 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.65 Total: 53.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.66 -10.32 -36.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337159975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.967 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds